ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17o24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GUN_PHAVU (P22503) Endoglucanase precursor (EC 3.2.1.4) (Endo-1,... 41 0.002
2GUN2_PERAE (P23666) Endoglucanase 2 (EC 3.2.1.4) (Endo-1,4-beta-... 39 0.012
3GUN1_PERAE (P05522) Endoglucanase 1 precursor (EC 3.2.1.4) (Endo... 39 0.012
4GUN9_ARATH (Q9C9H5) Probable family 9 endoglucanase At1g71380 pr... 35 0.10
5GUN6_DICDI (P22699) Endoglucanase precursor (EC 3.2.1.4) (Endo-1... 34 0.30
6GUNG_CLOCE (P37700) Endoglucanase G precursor (EC 3.2.1.4) (Endo... 31 2.5
7GUNZ_CLOSR (P23659) Endoglucanase Z precursor (EC 3.2.1.4) (Endo... 30 4.3
8GUNI_CLOTM (Q02934) Endoglucanase 1 precursor (EC 3.2.1.4) (Endo... 30 4.3
9REL_CHICK (P16236) C-Rel proto-oncogene protein (C-Rel protein) ... 30 5.6
10BMS1_HUMAN (Q14692) Ribosome biogenesis protein BMS1 homolog 29 7.4
11ILVD_BLOFL (Q7VRL8) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD) 29 9.6
12PHF3_HUMAN (Q92576) PHD finger protein 3 29 9.6
13MURA2_PROMA (Q7VAC5) UDP-N-acetylglucosamine 1-carboxyvinyltrans... 29 9.6
14EXOC2_DROME (Q9VQQ9) Exocyst complex component 2 (Exocyst comple... 29 9.6

>GUN_PHAVU (P22503) Endoglucanase precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase) (Abscission cellulase)
          Length = 496

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 18/40 (45%), Positives = 27/40 (67%)
 Frame = -1

Query: 540 GAMVAGXDKHDGFKDIRTNYNYTEPTLAANAGLVAALISL 421
           GA+V G D +D F D R++Y++ EPT   NA  VA++ +L
Sbjct: 453 GAIVGGPDSNDRFNDARSDYSHAEPTTYINAAFVASISAL 492



to top

>GUN2_PERAE (P23666) Endoglucanase 2 (EC 3.2.1.4) (Endo-1,4-beta-glucanase)|
           (Abscission cellulase 2) (Fragment)
          Length = 130

 Score = 38.5 bits (88), Expect = 0.012
 Identities = 19/41 (46%), Positives = 22/41 (53%)
 Frame = -1

Query: 540 GAMVAGXDKHDGFKDIRTNYNYTEPTLAANAGLVAALISLA 418
           GA++ G D  D F D R NY  +EP    NA LV AL   A
Sbjct: 84  GAILGGPDSRDSFSDDRNNYQQSEPATYINAPLVGALAFFA 124



to top

>GUN1_PERAE (P05522) Endoglucanase 1 precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase) (Abscission cellulase 1)
          Length = 494

 Score = 38.5 bits (88), Expect = 0.012
 Identities = 19/41 (46%), Positives = 22/41 (53%)
 Frame = -1

Query: 540 GAMVAGXDKHDGFKDIRTNYNYTEPTLAANAGLVAALISLA 418
           GA++ G D  D F D R NY  +EP    NA LV AL   A
Sbjct: 448 GAILGGPDNRDSFSDDRNNYQQSEPATYINAPLVGALAFFA 488



to top

>GUN9_ARATH (Q9C9H5) Probable family 9 endoglucanase At1g71380 precursor (EC|
           3.2.1.4)
          Length = 484

 Score = 35.4 bits (80), Expect = 0.10
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -1

Query: 540 GAMVAGXDKHDGFKDIRTNYNYTEPTLAANAGLVAALISLA 418
           GA+V G +++DG+ D R +Y++ EP    NA  V  L   A
Sbjct: 439 GAIVGGPNQNDGYPDQRDDYSHAEPATYINAAFVGPLAYFA 479



to top

>GUN6_DICDI (P22699) Endoglucanase precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase) (Spore germination protein
           270-6) (Cellulase)
          Length = 705

 Score = 33.9 bits (76), Expect = 0.30
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = -1

Query: 540 GAMVAGXDKHDGFKDIRTNYNYTEPTLAANAGLVAALISLAD 415
           GA+V G   +D + D RT+Y   E     NAG V AL SL +
Sbjct: 414 GALVGGPGSNDEYTDDRTDYISNEVATDYNAGFVGALASLVN 455



to top

>GUNG_CLOCE (P37700) Endoglucanase G precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase G) (Cellulase G) (EGCCG)
          Length = 725

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -1

Query: 540 GAMVAGXDKHDGFKDIRTNYNYTEPTLAANAGLVAALISL 421
           GA+V G D  DG+ D   NY   E     NAG   AL  +
Sbjct: 432 GALVGGPDNADGYTDEINNYVNNEIACDYNAGFTGALAKM 471



to top

>GUNZ_CLOSR (P23659) Endoglucanase Z precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase) (Thermoactive cellulase)
           (Avicelase I)
          Length = 986

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -1

Query: 540 GAMVAGXDKHDGFKDIRTNYNYTEPTLAANAGLVAALISL 421
           GA+V G  K D + D   NY   E     NAG V AL  +
Sbjct: 424 GALVGGPGKDDSYTDDINNYINNEVACDYNAGFVGALAKM 463



to top

>GUNI_CLOTM (Q02934) Endoglucanase 1 precursor (EC 3.2.1.4) (Endoglucanase I)|
           (EGI) (Endo-1,4-beta-glucanase) (Cellulase I)
          Length = 879

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 540 GAMVAGXDKHDGFKDIRTNYNYTEPTLAANAGLVAALISL 421
           GA+V G D  D + D  +NY   E     NAG V  L  +
Sbjct: 472 GALVGGPDSTDNYTDDISNYTCNEVACDYNAGFVGLLAKM 511



to top

>REL_CHICK (P16236) C-Rel proto-oncogene protein (C-Rel protein) (p68)|
          Length = 598

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 383 TPSSQQFPQCSRHPHHRRQLG 321
           T SSQ +P CS+ PH   QLG
Sbjct: 349 TSSSQMYPPCSQMPHQPAQLG 369



to top

>BMS1_HUMAN (Q14692) Ribosome biogenesis protein BMS1 homolog|
          Length = 1282

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -2

Query: 386  RTPSSQQFPQCSRHPHHRRQLGNLEESDS*TFHKHQMEGATDGCLIYSKDH---KQKADN 216
            + P  ++ P   R PH R+ L  L+     T H  +M+ A +   +++K+H   KQK + 
Sbjct: 1188 KVPKDRRRPAVIREPHERKILALLDALS--TVHSQKMKKAKEQRHLHNKEHFRAKQKEEE 1245

Query: 215  ISLQ 204
              L+
Sbjct: 1246 EKLK 1249



to top

>ILVD_BLOFL (Q7VRL8) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)|
          Length = 618

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 209 SLCCLLSVYGLCCISNNHLLLPPFDAYEMFRN 304
           S+ CL+ V GL    N  LL   FD  EMF N
Sbjct: 207 SMNCLMEVLGLAQPGNGSLLATHFDRKEMFLN 238



to top

>PHF3_HUMAN (Q92576) PHD finger protein 3|
          Length = 2039

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 374 SQQFPQCSRHPHHRRQLGNLEESDS*TFHKHQME 273
           S   P C + PHH  Q G++  S     HK Q +
Sbjct: 600 SHAHPGCLKEPHHPAQTGHVSHSSQKQCHKPQQQ 633



to top

>MURA2_PROMA (Q7VAC5) UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2 (EC|
           2.5.1.7) (Enoylpyruvate transferase 2)
           (UDP-N-acetylglucosamine enolpyruvyl transferase 2) (EPT
           2)
          Length = 427

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 15/36 (41%), Positives = 25/36 (69%)
 Frame = -2

Query: 290 HKHQMEGATDGCLIYSKDHKQKADNISLQSFYFCIG 183
           +K+Q+E  T G  ++SKD   +A + SL++ +FCIG
Sbjct: 64  NKNQLEIMTSGLSLFSKDLSCEAFH-SLRASFFCIG 98



to top

>EXOC2_DROME (Q9VQQ9) Exocyst complex component 2 (Exocyst complex component|
           Sec5)
          Length = 894

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 153 PWTGSCVRFVKLNFEVLVVLHIPSSRVKFFL*KWYLCKSFCF 28
           PW   C+RF ++ +  L+ L +PS  +          + FCF
Sbjct: 510 PWIPQCLRFTRIAYATLISLDLPSEALDIIQKLIDEVRLFCF 551


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,634,806
Number of Sequences: 219361
Number of extensions: 1407275
Number of successful extensions: 3305
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3305
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top