Clone Name | rbasd17o24 |
---|---|
Clone Library Name | barley_pub |
>gb|AY091512.1| Triticum aestivum endo-1,4-beta-glucanase mRNA, complete cds Length = 2196 Score = 777 bits (392), Expect = 0.0 Identities = 508/543 (93%), Gaps = 6/543 (1%) Strand = Plus / Minus Query: 1 tttactgtgacgaataagtncc-cctataaaacaaaatgacttacaaaggtaccatttct 59 ||||||| ||||||||| | | ||||||||||||||||||||||||||||||||||||| Sbjct: 2178 tttactgggacgaataantcactcctataaaacaaaatgacttacaaaggtaccatttct 2119 Query: 60 acaaaaagaacttcacacgtgaacttgggatatgaagaacaacaaggacctcaaaattta 119 |||||||||||||||||| |||||| || ||||| | ||||||||||||| ||||| ||| Sbjct: 2118 acaaaaagaacttcacacatgaactcggaatatggataacaacaaggaccccaaaaatta 2059 Query: 120 gtttcacaaatcgcacacaacttccagtccatggttgacagatgatttataatgatccgt 179 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 2058 gtttcacaaattgcacacaacttccagtccatggttgacagatgatttatactgatccgt 1999 Query: 180 cataccgatacagaagtagaaactctgtaagcttatgttgtctgctttctgtttatggtc 239 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct: 1998 cataccgatacagaagtagaaactctgtaagcttatgttgtctgctttctgttcgtggcc 1939 Query: 240 tttgctgtatat--caaacaaccatctgttgctccctccatttgatgcttatgaaatgtt 297 || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1938 ttcgctgtatataccaaacaaccatctgttgctccctccatttgatgcttatgaaatgtt 1879 Query: 298 caggaatctgattcttcaaggtttccaagctgacggcggtggtgggggtgtcgggaacat 357 |||| |||||| |||||| |||||||||||||| | ||||| |||||||||||||||| Sbjct: 1878 cagggatctgactcttcatggtttccaagctga--ggagtggt-ggggtgtcgggaacat 1822 Query: 358 tgggggaactgctgagaagatggtgttcttatcaattgaatatctgccagtatcgatgtc 417 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1821 tgggggaactgctgagaagatggtgttcttatcaattgaatatctgccggtatcgatgtc 1762 Query: 418 agctaaagaaatcaatgctgcaaccaggccagcatttgctgcaagagtaggctctgtgta 477 ||||| |||||||||||||||||||| |||||||||||||||||| ||||| |||||||| Sbjct: 1761 agctagagaaatcaatgctgcaaccaagccagcatttgctgcaagggtaggttctgtgta 1702 Query: 478 attgtaatttgtgcggatatctttgaagccatcatgcttgtcangcccagcaaccattgc 537 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct: 1701 attgtaatttgtgcggatatctttgaagccatcatgcttgtcagggccagcaaccattgc 1642 Query: 538 tcc 540 ||| Sbjct: 1641 tcc 1639
>dbj|AB040769.1| Hordeum vulgare mRNA for endo-1,4-beta-glucanase Cel1, complete cds Length = 2442 Score = 581 bits (293), Expect = e-163 Identities = 305/308 (99%), Gaps = 1/308 (0%) Strand = Plus / Minus Query: 6 tgtgacgaataagtncc-cctataaaacaaaatgacttacaaaggtaccatttctacaaa 64 |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2420 tgtgacgaataagtcactcctataaaacaaaatgacttacaaaggtaccatttctacaaa 2361 Query: 65 aagaacttcacacgtgaacttgggatatgaagaacaacaaggacctcaaaatttagtttc 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2360 aagaacttcacacgtgaacttgggatatgaagaacaacaaggacctcaaaatttagtttc 2301 Query: 125 acaaatcgcacacaacttccagtccatggttgacagatgatttataatgatccgtcatac 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2300 acaaatcgcacacaacttccagtccatggttgacagatgatttataatgatccgtcatac 2241 Query: 185 cgatacagaagtagaaactctgtaagcttatgttgtctgctttctgtttatggtctttgc 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2240 cgatacagaagtagaaactctgtaagcttatgttgtctgctttctgtttatggtctttgc 2181 Query: 245 tgtatatcaaacaaccatctgttgctccctccatttgatgcttatgaaatgttcaggaat 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2180 tgtatatcaaacaaccatctgttgctccctccatttgatgcttatgaaatgttcaggaat 2121 Query: 305 ctgattct 312 |||||||| Sbjct: 2120 ctgattct 2113 Score = 565 bits (285), Expect = e-158 Identities = 287/288 (99%) Strand = Plus / Minus Query: 253 aaacaaccatctgttgctccctccatttgatgcttatgaaatgttcaggaatctgattct 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2112 aaacaaccatctgttgctccctccatttgatgcttatgaaatgttcaggaatctgattct 2053 Query: 313 tcaaggtttccaagctgacggcggtggtgggggtgtcgggaacattgggggaactgctga 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2052 tcaaggtttccaagctgacggcggtggtgggggtgtcgggaacattgggggaactgctga 1993 Query: 373 gaagatggtgttcttatcaattgaatatctgccagtatcgatgtcagctaaagaaatcaa 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1992 gaagatggtgttcttatcaattgaatatctgccagtatcgatgtcagctaaagaaatcaa 1933 Query: 433 tgctgcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgtaatttgtgcg 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1932 tgctgcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgtaatttgtgcg 1873 Query: 493 gatatctttgaagccatcatgcttgtcangcccagcaaccattgctcc 540 |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1872 gatatctttgaagccatcatgcttgtcaggcccagcaaccattgctcc 1825
>ref|XM_469632.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2313 Score = 212 bits (107), Expect = 9e-52 Identities = 293/349 (83%), Gaps = 7/349 (2%) Strand = Plus / Minus Query: 45 aaaggtaccatttctacaaaaagaacttcacacgtgaacttgggatatgaagaacaacaa 104 |||||| |||||||||||||||||||||||||| ||| || | | ||| |||||||| Sbjct: 2237 aaaggttccatttctacaaaaagaacttcacacatgagctctgaac--gaataacaacaa 2180 Query: 105 ggacctcaaaatttagtttcacaaatcgcacacaacttccag-tccatggttgacagatg 163 ||||| ||||| |||||||||||| ||||||||| ||| | || || || |||||||| Sbjct: 2179 ggaccccaaaaattagtttcacaaggtgcacacaacatcccggtctattgtcgacagatg 2120 Query: 164 a-tttataatgatccgtcataccgatacagaag-tagaaactctgtaagcttatgttgtc 221 | |||||| |||| ||||||| ||||||||| |||| |||||||||||||||||||| Sbjct: 2119 aatttataccgatctgtcatactgatacagaaaatagaggctctgtaagcttatgttgtc 2060 Query: 222 tgctttctgtttatggtctttgctgtatatcaaacaaccatctgttgctccctccatttg 281 |||||||||| | || |||||||||| ||||||| ||||||| | ||||||| |||| Sbjct: 2059 tgctttctgtatgtgtcctttgctgtac--caaacaaacatctgtcgttccctccgtttg 2002 Query: 282 atgcttatgaaatgttcaggaatctgattcttcaaggtttccaagctgacggcggtggtg 341 ||||| | ||||| ||||| |||||| |||||| ||||||||||||||||| || |||| Sbjct: 2001 atgctcaagaaatattcagcgatctgactcttcatggtttccaagctgacggtggaggtg 1942 Query: 342 ggggtgtcgggaacattgggggaactgctgagaagatggtgttcttatc 390 |||| || || ||||| || |||||||| |||||||||||||||||||| Sbjct: 1941 ggggagttggaaacatcggaggaactgcagagaagatggtgttcttatc 1893 Score = 145 bits (73), Expect = 2e-31 Identities = 105/116 (90%) Strand = Plus / Minus Query: 425 gaaatcaatgctgcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgtaa 484 |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1861 gaaatcaaggctgccaccaggccagcatttgctgcaagagtaggctccgtgtaattgtag 1802 Query: 485 tttgtgcggatatctttgaagccatcatgcttgtcangcccagcaaccattgctcc 540 ||||| |||| ||||||||||||||||||| | ||| | |||||||||| |||||| Sbjct: 1801 tttgtacggacatctttgaagccatcatgcctatcagggccagcaaccagtgctcc 1746
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 212 bits (107), Expect = 9e-52 Identities = 293/349 (83%), Gaps = 7/349 (2%) Strand = Plus / Plus Query: 45 aaaggtaccatttctacaaaaagaacttcacacgtgaacttgggatatgaagaacaacaa 104 |||||| |||||||||||||||||||||||||| ||| || | | ||| |||||||| Sbjct: 29889453 aaaggttccatttctacaaaaagaacttcacacatgagctctgaac--gaataacaacaa 29889510 Query: 105 ggacctcaaaatttagtttcacaaatcgcacacaacttccag-tccatggttgacagatg 163 ||||| ||||| |||||||||||| ||||||||| ||| | || || || |||||||| Sbjct: 29889511 ggaccccaaaaattagtttcacaaggtgcacacaacatcccggtctattgtcgacagatg 29889570 Query: 164 a-tttataatgatccgtcataccgatacagaag-tagaaactctgtaagcttatgttgtc 221 | |||||| |||| ||||||| ||||||||| |||| |||||||||||||||||||| Sbjct: 29889571 aatttataccgatctgtcatactgatacagaaaatagaggctctgtaagcttatgttgtc 29889630 Query: 222 tgctttctgtttatggtctttgctgtatatcaaacaaccatctgttgctccctccatttg 281 |||||||||| | || |||||||||| ||||||| ||||||| | ||||||| |||| Sbjct: 29889631 tgctttctgtatgtgtcctttgctgtac--caaacaaacatctgtcgttccctccgtttg 29889688 Query: 282 atgcttatgaaatgttcaggaatctgattcttcaaggtttccaagctgacggcggtggtg 341 ||||| | ||||| ||||| |||||| |||||| ||||||||||||||||| || |||| Sbjct: 29889689 atgctcaagaaatattcagcgatctgactcttcatggtttccaagctgacggtggaggtg 29889748 Query: 342 ggggtgtcgggaacattgggggaactgctgagaagatggtgttcttatc 390 |||| || || ||||| || |||||||| |||||||||||||||||||| Sbjct: 29889749 ggggagttggaaacatcggaggaactgcagagaagatggtgttcttatc 29889797 Score = 145 bits (73), Expect = 2e-31 Identities = 105/116 (90%) Strand = Plus / Plus Query: 425 gaaatcaatgctgcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgtaa 484 |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 29889829 gaaatcaaggctgccaccaggccagcatttgctgcaagagtaggctccgtgtaattgtag 29889888 Query: 485 tttgtgcggatatctttgaagccatcatgcttgtcangcccagcaaccattgctcc 540 ||||| |||| ||||||||||||||||||| | ||| | |||||||||| |||||| Sbjct: 29889889 tttgtacggacatctttgaagccatcatgcctatcagggccagcaaccagtgctcc 29889944 Score = 40.1 bits (20), Expect = 7.3 Identities = 25/27 (92%) Strand = Plus / Plus Query: 506 ccatcatgcttgtcangcccagcaacc 532 ||||||||||||||| | ||||||||| Sbjct: 30276581 ccatcatgcttgtcaagaccagcaacc 30276607
>gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa0084L17, complete sequence Length = 159661 Score = 212 bits (107), Expect = 9e-52 Identities = 293/349 (83%), Gaps = 7/349 (2%) Strand = Plus / Minus Query: 45 aaaggtaccatttctacaaaaagaacttcacacgtgaacttgggatatgaagaacaacaa 104 |||||| |||||||||||||||||||||||||| ||| || | | ||| |||||||| Sbjct: 121153 aaaggttccatttctacaaaaagaacttcacacatgagctctgaac--gaataacaacaa 121096 Query: 105 ggacctcaaaatttagtttcacaaatcgcacacaacttccag-tccatggttgacagatg 163 ||||| ||||| |||||||||||| ||||||||| ||| | || || || |||||||| Sbjct: 121095 ggaccccaaaaattagtttcacaaggtgcacacaacatcccggtctattgtcgacagatg 121036 Query: 164 a-tttataatgatccgtcataccgatacagaag-tagaaactctgtaagcttatgttgtc 221 | |||||| |||| ||||||| ||||||||| |||| |||||||||||||||||||| Sbjct: 121035 aatttataccgatctgtcatactgatacagaaaatagaggctctgtaagcttatgttgtc 120976 Query: 222 tgctttctgtttatggtctttgctgtatatcaaacaaccatctgttgctccctccatttg 281 |||||||||| | || |||||||||| ||||||| ||||||| | ||||||| |||| Sbjct: 120975 tgctttctgtatgtgtcctttgctgtac--caaacaaacatctgtcgttccctccgtttg 120918 Query: 282 atgcttatgaaatgttcaggaatctgattcttcaaggtttccaagctgacggcggtggtg 341 ||||| | ||||| ||||| |||||| |||||| ||||||||||||||||| || |||| Sbjct: 120917 atgctcaagaaatattcagcgatctgactcttcatggtttccaagctgacggtggaggtg 120858 Query: 342 ggggtgtcgggaacattgggggaactgctgagaagatggtgttcttatc 390 |||| || || ||||| || |||||||| |||||||||||||||||||| Sbjct: 120857 ggggagttggaaacatcggaggaactgcagagaagatggtgttcttatc 120809 Score = 145 bits (73), Expect = 2e-31 Identities = 105/116 (90%) Strand = Plus / Minus Query: 425 gaaatcaatgctgcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgtaa 484 |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 120777 gaaatcaaggctgccaccaggccagcatttgctgcaagagtaggctccgtgtaattgtag 120718 Query: 485 tttgtgcggatatctttgaagccatcatgcttgtcangcccagcaaccattgctcc 540 ||||| |||| ||||||||||||||||||| | ||| | |||||||||| |||||| Sbjct: 120717 tttgtacggacatctttgaagccatcatgcctatcagggccagcaaccagtgctcc 120662
>gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 genomic sequence, complete sequence Length = 139946 Score = 212 bits (107), Expect = 9e-52 Identities = 293/349 (83%), Gaps = 7/349 (2%) Strand = Plus / Plus Query: 45 aaaggtaccatttctacaaaaagaacttcacacgtgaacttgggatatgaagaacaacaa 104 |||||| |||||||||||||||||||||||||| ||| || | | ||| |||||||| Sbjct: 55394 aaaggttccatttctacaaaaagaacttcacacatgagctctgaac--gaataacaacaa 55451 Query: 105 ggacctcaaaatttagtttcacaaatcgcacacaacttccag-tccatggttgacagatg 163 ||||| ||||| |||||||||||| ||||||||| ||| | || || || |||||||| Sbjct: 55452 ggaccccaaaaattagtttcacaaggtgcacacaacatcccggtctattgtcgacagatg 55511 Query: 164 a-tttataatgatccgtcataccgatacagaag-tagaaactctgtaagcttatgttgtc 221 | |||||| |||| ||||||| ||||||||| |||| |||||||||||||||||||| Sbjct: 55512 aatttataccgatctgtcatactgatacagaaaatagaggctctgtaagcttatgttgtc 55571 Query: 222 tgctttctgtttatggtctttgctgtatatcaaacaaccatctgttgctccctccatttg 281 |||||||||| | || |||||||||| ||||||| ||||||| | ||||||| |||| Sbjct: 55572 tgctttctgtatgtgtcctttgctgtac--caaacaaacatctgtcgttccctccgtttg 55629 Query: 282 atgcttatgaaatgttcaggaatctgattcttcaaggtttccaagctgacggcggtggtg 341 ||||| | ||||| ||||| |||||| |||||| ||||||||||||||||| || |||| Sbjct: 55630 atgctcaagaaatattcagcgatctgactcttcatggtttccaagctgacggtggaggtg 55689 Query: 342 ggggtgtcgggaacattgggggaactgctgagaagatggtgttcttatc 390 |||| || || ||||| || |||||||| |||||||||||||||||||| Sbjct: 55690 ggggagttggaaacatcggaggaactgcagagaagatggtgttcttatc 55738 Score = 145 bits (73), Expect = 2e-31 Identities = 105/116 (90%) Strand = Plus / Plus Query: 425 gaaatcaatgctgcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgtaa 484 |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 55770 gaaatcaaggctgccaccaggccagcatttgctgcaagagtaggctccgtgtaattgtag 55829 Query: 485 tttgtgcggatatctttgaagccatcatgcttgtcangcccagcaaccattgctcc 540 ||||| |||| ||||||||||||||||||| | ||| | |||||||||| |||||| Sbjct: 55830 tttgtacggacatctttgaagccatcatgcctatcagggccagcaaccagtgctcc 55885
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 212 bits (107), Expect = 9e-52 Identities = 293/349 (83%), Gaps = 7/349 (2%) Strand = Plus / Plus Query: 45 aaaggtaccatttctacaaaaagaacttcacacgtgaacttgggatatgaagaacaacaa 104 |||||| |||||||||||||||||||||||||| ||| || | | ||| |||||||| Sbjct: 29980875 aaaggttccatttctacaaaaagaacttcacacatgagctctgaac--gaataacaacaa 29980932 Query: 105 ggacctcaaaatttagtttcacaaatcgcacacaacttccag-tccatggttgacagatg 163 ||||| ||||| |||||||||||| ||||||||| ||| | || || || |||||||| Sbjct: 29980933 ggaccccaaaaattagtttcacaaggtgcacacaacatcccggtctattgtcgacagatg 29980992 Query: 164 a-tttataatgatccgtcataccgatacagaag-tagaaactctgtaagcttatgttgtc 221 | |||||| |||| ||||||| ||||||||| |||| |||||||||||||||||||| Sbjct: 29980993 aatttataccgatctgtcatactgatacagaaaatagaggctctgtaagcttatgttgtc 29981052 Query: 222 tgctttctgtttatggtctttgctgtatatcaaacaaccatctgttgctccctccatttg 281 |||||||||| | || |||||||||| ||||||| ||||||| | ||||||| |||| Sbjct: 29981053 tgctttctgtatgtgtcctttgctgtac--caaacaaacatctgtcgttccctccgtttg 29981110 Query: 282 atgcttatgaaatgttcaggaatctgattcttcaaggtttccaagctgacggcggtggtg 341 ||||| | ||||| ||||| |||||| |||||| ||||||||||||||||| || |||| Sbjct: 29981111 atgctcaagaaatattcagcgatctgactcttcatggtttccaagctgacggtggaggtg 29981170 Query: 342 ggggtgtcgggaacattgggggaactgctgagaagatggtgttcttatc 390 |||| || || ||||| || |||||||| |||||||||||||||||||| Sbjct: 29981171 ggggagttggaaacatcggaggaactgcagagaagatggtgttcttatc 29981219 Score = 145 bits (73), Expect = 2e-31 Identities = 105/116 (90%) Strand = Plus / Plus Query: 425 gaaatcaatgctgcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgtaa 484 |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 29981251 gaaatcaaggctgccaccaggccagcatttgctgcaagagtaggctccgtgtaattgtag 29981310 Query: 485 tttgtgcggatatctttgaagccatcatgcttgtcangcccagcaaccattgctcc 540 ||||| |||| ||||||||||||||||||| | ||| | |||||||||| |||||| Sbjct: 29981311 tttgtacggacatctttgaagccatcatgcctatcagggccagcaaccagtgctcc 29981366 Score = 40.1 bits (20), Expect = 7.3 Identities = 25/27 (92%) Strand = Plus / Plus Query: 506 ccatcatgcttgtcangcccagcaacc 532 ||||||||||||||| | ||||||||| Sbjct: 30368003 ccatcatgcttgtcaagaccagcaacc 30368029
>dbj|AK104929.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-D09, full insert sequence Length = 1963 Score = 212 bits (107), Expect = 9e-52 Identities = 293/349 (83%), Gaps = 7/349 (2%) Strand = Plus / Minus Query: 45 aaaggtaccatttctacaaaaagaacttcacacgtgaacttgggatatgaagaacaacaa 104 |||||| |||||||||||||||||||||||||| ||| || | | ||| |||||||| Sbjct: 1913 aaaggttccatttctacaaaaagaacttcacacatgagctctgaac--gaataacaacaa 1856 Query: 105 ggacctcaaaatttagtttcacaaatcgcacacaacttccag-tccatggttgacagatg 163 ||||| ||||| |||||||||||| ||||||||| ||| | || || || |||||||| Sbjct: 1855 ggaccccaaaaattagtttcacaaggtgcacacaacatcccggtctattgtcgacagatg 1796 Query: 164 a-tttataatgatccgtcataccgatacagaag-tagaaactctgtaagcttatgttgtc 221 | |||||| |||| ||||||| ||||||||| |||| |||||||||||||||||||| Sbjct: 1795 aatttataccgatctgtcatactgatacagaaaatagaggctctgtaagcttatgttgtc 1736 Query: 222 tgctttctgtttatggtctttgctgtatatcaaacaaccatctgttgctccctccatttg 281 |||||||||| | || |||||||||| ||||||| ||||||| | ||||||| |||| Sbjct: 1735 tgctttctgtatgtgtcctttgctgtac--caaacaaacatctgtcgttccctccgtttg 1678 Query: 282 atgcttatgaaatgttcaggaatctgattcttcaaggtttccaagctgacggcggtggtg 341 ||||| | ||||| ||||| |||||| |||||| ||||||||||||||||| || |||| Sbjct: 1677 atgctcaagaaatattcagcgatctgactcttcatggtttccaagctgacggtggaggtg 1618 Query: 342 ggggtgtcgggaacattgggggaactgctgagaagatggtgttcttatc 390 |||| || || ||||| || |||||||| |||||||||||||||||||| Sbjct: 1617 ggggagttggaaacatcggaggaactgcagagaagatggtgttcttatc 1569 Score = 145 bits (73), Expect = 2e-31 Identities = 105/116 (90%) Strand = Plus / Minus Query: 425 gaaatcaatgctgcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgtaa 484 |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1537 gaaatcaaggctgccaccaggccagcatttgctgcaagagtaggctccgtgtaattgtag 1478 Query: 485 tttgtgcggatatctttgaagccatcatgcttgtcangcccagcaaccattgctcc 540 ||||| |||| ||||||||||||||||||| | ||| | |||||||||| |||||| Sbjct: 1477 tttgtacggacatctttgaagccatcatgcctatcagggccagcaaccagtgctcc 1422
>dbj|AK070408.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054M04, full insert sequence Length = 2397 Score = 212 bits (107), Expect = 9e-52 Identities = 293/349 (83%), Gaps = 7/349 (2%) Strand = Plus / Minus Query: 45 aaaggtaccatttctacaaaaagaacttcacacgtgaacttgggatatgaagaacaacaa 104 |||||| |||||||||||||||||||||||||| ||| || | | ||| |||||||| Sbjct: 2338 aaaggttccatttctacaaaaagaacttcacacatgagctctgaac--gaataacaacaa 2281 Query: 105 ggacctcaaaatttagtttcacaaatcgcacacaacttccag-tccatggttgacagatg 163 ||||| ||||| |||||||||||| ||||||||| ||| | || || || |||||||| Sbjct: 2280 ggaccccaaaaattagtttcacaaggtgcacacaacatcccggtctattgtcgacagatg 2221 Query: 164 a-tttataatgatccgtcataccgatacagaag-tagaaactctgtaagcttatgttgtc 221 | |||||| |||| ||||||| ||||||||| |||| |||||||||||||||||||| Sbjct: 2220 aatttataccgatctgtcatactgatacagaaaatagaggctctgtaagcttatgttgtc 2161 Query: 222 tgctttctgtttatggtctttgctgtatatcaaacaaccatctgttgctccctccatttg 281 |||||||||| | || |||||||||| ||||||| ||||||| | ||||||| |||| Sbjct: 2160 tgctttctgtatgtgtcctttgctgtac--caaacaaacatctgtcgttccctccgtttg 2103 Query: 282 atgcttatgaaatgttcaggaatctgattcttcaaggtttccaagctgacggcggtggtg 341 ||||| | ||||| ||||| |||||| |||||| ||||||||||||||||| || |||| Sbjct: 2102 atgctcaagaaatattcagcgatctgactcttcatggtttccaagctgacggtggaggtg 2043 Query: 342 ggggtgtcgggaacattgggggaactgctgagaagatggtgttcttatc 390 |||| || || ||||| || |||||||| |||||||||||||||||||| Sbjct: 2042 ggggagttggaaacatcggaggaactgcagagaagatggtgttcttatc 1994 Score = 145 bits (73), Expect = 2e-31 Identities = 105/116 (90%) Strand = Plus / Minus Query: 425 gaaatcaatgctgcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgtaa 484 |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1962 gaaatcaaggctgccaccaggccagcatttgctgcaagagtaggctccgtgtaattgtag 1903 Query: 485 tttgtgcggatatctttgaagccatcatgcttgtcangcccagcaaccattgctcc 540 ||||| |||| ||||||||||||||||||| | ||| | |||||||||| |||||| Sbjct: 1902 tttgtacggacatctttgaagccatcatgcctatcagggccagcaaccagtgctcc 1847
>gb|BT017857.1| Zea mays clone EL01N0511D04.c mRNA sequence Length = 894 Score = 87.7 bits (44), Expect = 3e-14 Identities = 91/107 (85%) Strand = Plus / Minus Query: 434 gctgcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgtaatttgtgcgg 493 ||||||||||| |||||||| ||||| ||||||||||| ||||| ||||| || |||||| Sbjct: 525 gctgcaaccagaccagcattcgctgcgagagtaggctccgtgtagttgtagttcgtgcgg 466 Query: 494 atatctttgaagccatcatgcttgtcangcccagcaaccattgctcc 540 | ||||||| ||||||| || |||| | ||||| ||||||||||| Sbjct: 465 acatctttgtagccatcgcgcctgtcggggccagccaccattgctcc 419 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 317 ggtttccaagctgacggcggtggtgggggtgtcgggaacattgggggaactgctgagaag 376 |||||||| ||||| ||||| || |||||||| |||||||| || |||| || |||||| Sbjct: 642 ggtttccatgctgatggcggcggcgggggtgttgggaacatcggaggaatcgcagagaag 583 Query: 377 atggtgttcttatc 390 |||||||||||||| Sbjct: 582 atggtgttcttatc 569 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Minus Query: 188 tacagaagtagaaactctgtaagcttatgttgtctgctttc 228 ||||||| ||||| | || ||||||||||||||| |||||| Sbjct: 777 tacagaaatagaagccctataagcttatgttgtcagctttc 737
>gb|BT023982.1| Zea mays clone EL01N0414A03 mRNA sequence Length = 1870 Score = 87.7 bits (44), Expect = 3e-14 Identities = 91/107 (85%) Strand = Plus / Minus Query: 434 gctgcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgtaatttgtgcgg 493 ||||||||||| |||||||| ||||| ||||||||||| ||||| ||||| || |||||| Sbjct: 1436 gctgcaaccagaccagcattcgctgcgagagtaggctccgtgtagttgtagttcgtgcgg 1377 Query: 494 atatctttgaagccatcatgcttgtcangcccagcaaccattgctcc 540 | ||||||| ||||||| || |||| | ||||| ||||||||||| Sbjct: 1376 acatctttgtagccatcgcgcctgtcggggccagccaccattgctcc 1330 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 317 ggtttccaagctgacggcggtggtgggggtgtcgggaacattgggggaactgctgagaag 376 |||||||| ||||| ||||| || |||||||| |||||||| || |||| || |||||| Sbjct: 1553 ggtttccatgctgatggcggcggcgggggtgttgggaacatcggaggaatcgcagagaag 1494 Query: 377 atggtgttcttatc 390 |||||||||||||| Sbjct: 1493 atggtgttcttatc 1480
>gb|AY104195.1| Zea mays PCO094435 mRNA sequence Length = 2019 Score = 87.7 bits (44), Expect = 3e-14 Identities = 91/107 (85%) Strand = Plus / Minus Query: 434 gctgcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgtaatttgtgcgg 493 ||||||||||| |||||||| ||||| ||||||||||| ||||| ||||| || |||||| Sbjct: 1502 gctgcaaccagaccagcattcgctgcgagagtaggctccgtgtagttgtagttcgtgcgg 1443 Query: 494 atatctttgaagccatcatgcttgtcangcccagcaaccattgctcc 540 | ||||||| ||||||| || |||| | ||||| ||||||||||| Sbjct: 1442 acatctttgtagccatcgcgcctgtcggggccagccaccattgctcc 1396 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 317 ggtttccaagctgacggcggtggtgggggtgtcgggaacattgggggaactgctgagaag 376 |||||||| ||||| ||||| || |||||||| |||||||| || |||| || |||||| Sbjct: 1619 ggtttccatgctgatggcggcggcgggggtgttgggaacatcggaggaatcgcagagaag 1560 Query: 377 atggtgttcttatc 390 |||||||||||||| Sbjct: 1559 atggtgttcttatc 1546 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Minus Query: 45 aaaggtaccatttctacaaaaagaacttcacac 77 ||||||||||||||||||||||||||||||||| Sbjct: 1896 aaaggtaccatttctacaaaaagaacttcacac 1864
>gb|DQ382354.1| Glycine max clone pSC12a endo-1,4-beta-glucancase precursor (Cel12) mRNA, partial cds Length = 1841 Score = 69.9 bits (35), Expect = 8e-09 Identities = 73/86 (84%) Strand = Plus / Minus Query: 449 gcatttgctgcaagagtaggctctgtgtaattgtaatttgtgcggatatctttgaagcca 508 |||||| | ||||| || ||||||||||||||||| ||||| || | ||| | ||||||| Sbjct: 1757 gcatttccagcaagtgttggctctgtgtaattgtagtttgtacgaacatcatggaagcca 1698 Query: 509 tcatgcttgtcangcccagcaaccat 534 |||||||||||| | || |||||||| Sbjct: 1697 tcatgcttgtcaggaccggcaaccat 1672
>gb|AY660967.1| Populus tremula x Populus tremuloides Cel9A mRNA, complete cds Length = 1860 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 317 ggtttccaagctgacggcggtggtgggggtgtcgggaacattgggggaactgctgagaag 376 |||||||||| || || |||||||| || || || ||||||||||||||||| ||||| Sbjct: 1856 ggtttccaaggtgctggtggtggtggaggagttggaaacattgggggaactgcagagaat 1797 Query: 377 atggtgttcttatcaat 393 ||||||||||| ||||| Sbjct: 1796 atggtgttcttgtcaat 1780 Score = 46.1 bits (23), Expect = 0.12 Identities = 61/74 (82%) Strand = Plus / Minus Query: 467 ggctctgtgtaattgtaatttgtgcggatatctttgaagccatcatgcttgtcangccca 526 |||||||| ||||| || || ||||| | ||| | ||| ||||||||| ||||| | ||| Sbjct: 1712 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgcctgtcagggcca 1653 Query: 527 gcaaccattgctcc 540 |||||||| ||||| Sbjct: 1652 gcaaccatggctcc 1639
>ref|NM_118559.1| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds AT4G24260 mRNA, complete cds Length = 1863 Score = 63.9 bits (32), Expect = 5e-07 Identities = 79/95 (83%) Strand = Plus / Minus Query: 446 ccagcatttgctgcaagagtaggctctgtgtaattgtaatttgtgcggatatctttgaag 505 ||||||||| | || ||||| |||||||| || ||||||||||| || || || | ||| Sbjct: 1733 ccagcatttcccgctagagtcggctctgtatagttgtaatttgttcgtatgtcgtggaat 1674 Query: 506 ccatcatgcttgtcangcccagcaaccattgctcc 540 || ||||||||||| | ||||||||||||||||| Sbjct: 1673 ccgtcatgcttgtctggtccagcaaccattgctcc 1639
>gb|BT013492.1| Lycopersicon esculentum clone 132176F, mRNA sequence Length = 2314 Score = 63.9 bits (32), Expect = 5e-07 Identities = 79/95 (83%) Strand = Plus / Minus Query: 446 ccagcatttgctgcaagagtaggctctgtgtaattgtaatttgtgcggatatctttgaag 505 ||||||||| | |||||||||||||| || ||||||||||| | |||| ||| ||| Sbjct: 1885 ccagcatttccagcaagagtaggctccgtataattgtaattagaacggacatcacggaaa 1826 Query: 506 ccatcatgcttgtcangcccagcaaccattgctcc 540 |||||||||||||| | ||||||||||| ||||| Sbjct: 1825 ccatcatgcttgtctggtccagcaaccatggctcc 1791
>emb|AL078637.1|ATT22A6 Arabidopsis thaliana DNA chromosome 4, BAC clone T22A6 (ESSA project) Length = 108459 Score = 63.9 bits (32), Expect = 5e-07 Identities = 79/95 (83%) Strand = Plus / Plus Query: 446 ccagcatttgctgcaagagtaggctctgtgtaattgtaatttgtgcggatatctttgaag 505 ||||||||| | || ||||| |||||||| || ||||||||||| || || || | ||| Sbjct: 29052 ccagcatttcccgctagagtcggctctgtatagttgtaatttgttcgtatgtcgtggaat 29111 Query: 506 ccatcatgcttgtcangcccagcaaccattgctcc 540 || ||||||||||| | ||||||||||||||||| Sbjct: 29112 ccgtcatgcttgtctggtccagcaaccattgctcc 29146
>emb|AL161561.2|ATCHRIV61 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61 Length = 198402 Score = 63.9 bits (32), Expect = 5e-07 Identities = 79/95 (83%) Strand = Plus / Plus Query: 446 ccagcatttgctgcaagagtaggctctgtgtaattgtaatttgtgcggatatctttgaag 505 ||||||||| | || ||||| |||||||| || ||||||||||| || || || | ||| Sbjct: 45709 ccagcatttcccgctagagtcggctctgtatagttgtaatttgttcgtatgtcgtggaat 45768 Query: 506 ccatcatgcttgtcangcccagcaaccattgctcc 540 || ||||||||||| | ||||||||||||||||| Sbjct: 45769 ccgtcatgcttgtctggtccagcaaccattgctcc 45803
>gb|U78526.1|LEU78526 Lycopersicon esculentum endo-1,4-beta-glucanase (Cel3) mRNA, complete cds Length = 2286 Score = 63.9 bits (32), Expect = 5e-07 Identities = 79/95 (83%) Strand = Plus / Minus Query: 446 ccagcatttgctgcaagagtaggctctgtgtaattgtaatttgtgcggatatctttgaag 505 ||||||||| | |||||||||||||| || ||||||||||| | |||| ||| ||| Sbjct: 1875 ccagcatttccagcaagagtaggctccgtataattgtaattagaacggacatcacggaaa 1816 Query: 506 ccatcatgcttgtcangcccagcaaccattgctcc 540 |||||||||||||| | ||||||||||| ||||| Sbjct: 1815 ccatcatgcttgtctggtccagcaaccatggctcc 1781
>gb|AY535003.1| Populus tremuloides endo-1,4-beta-glucanase (Kor1) mRNA, complete cds Length = 2562 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 317 ggtttccaagctgacggcggtggtgggggtgtcgggaacattgggggaactgctgagaag 376 |||||||||| || || |||||||| || || || |||||||||||||| || ||||| Sbjct: 2118 ggtttccaaggtgctggtggtggtggaggagttggaaacattgggggaaccgcagagaat 2059 Query: 377 atggtgttcttatcaat 393 ||||||||||| ||||| Sbjct: 2058 atggtgttcttgtcaat 2042 Score = 46.1 bits (23), Expect = 0.12 Identities = 61/74 (82%) Strand = Plus / Minus Query: 467 ggctctgtgtaattgtaatttgtgcggatatctttgaagccatcatgcttgtcangccca 526 |||||||| ||||| || || ||||| | ||| | ||| ||||||||| ||||| | ||| Sbjct: 1974 ggctctgtataattatagttggtgcgaacatcatggaaaccatcatgcctgtcagggcca 1915 Query: 527 gcaaccattgctcc 540 |||||||| ||||| Sbjct: 1914 gcaaccatggctcc 1901
>emb|AJ242807.1|BNA242807 Brassica napus Cel16 gene for endo-1,4-beta-D-glucanase (cellulase) Length = 5454 Score = 58.0 bits (29), Expect = 3e-05 Identities = 88/108 (81%) Strand = Plus / Minus Query: 433 tgctgcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgtaatttgtgcg 492 |||||| |||||||||||||| |||||||||| || || ||||| ||||| || || || Sbjct: 4332 tgctgcgaccaggccagcattccctgcaagagtcggttcagtgtagttgtagttggtccg 4273 Query: 493 gatatctttgaagccatcatgcttgtcangcccagcaaccattgctcc 540 || ||| ||| ||||| |||||||| | ||||||||||| ||||| Sbjct: 4272 gacatcgcggaacccatcgcgcttgtcaggaccagcaaccatggctcc 4225
>dbj|AB084463.1| Pyrus communis PC-EG1 mRNA for endo-1,4-beta-D-glucanase, encodes membrane-spanning domain, complete cds Length = 2242 Score = 54.0 bits (27), Expect = 5e-04 Identities = 71/86 (82%) Strand = Plus / Minus Query: 449 gcatttgctgcaagagtaggctctgtgtaattgtaatttgtgcggatatctttgaagcca 508 |||||| |||||||||| ||||||||||| |||||||| | || | ||| ||| ||| Sbjct: 1810 gcatttcctgcaagagtcggctctgtgtagttgtaattagaacgaacatcacggaaacca 1751 Query: 509 tcatgcttgtcangcccagcaaccat 534 ||||| |||||| | ||||||||||| Sbjct: 1750 tcatgtttgtcaggaccagcaaccat 1725 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Minus Query: 317 ggtttccaagctgacggcggtggtgggggtgtcgggaacattgggggaactgctgagaa 375 |||||||| | || ||| |||||||| || || ||||||||||||||||| || ||||| Sbjct: 1936 ggtttccagggtgccggaggtggtggtggagtggggaacattgggggaaccgcagagaa 1878
>gb|BT013449.1| Lycopersicon esculentum clone 132105F, mRNA sequence Length = 2203 Score = 52.0 bits (26), Expect = 0.002 Identities = 82/101 (81%) Strand = Plus / Minus Query: 434 gctgcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgtaatttgtgcgg 493 |||||||||| ||||||||| | ||||| || ||||| || ||||||||||| || || Sbjct: 1804 gctgcaaccaacccagcatttccggcaagtgttggctcggtataattgtaattagtacga 1745 Query: 494 atatctttgaagccatcatgcttgtcangcccagcaaccat 534 | ||| | ||| ||||||| |||||| | ||||||||||| Sbjct: 1744 acatcatggaaaccatcattcttgtctggtccagcaaccat 1704 Score = 44.1 bits (22), Expect = 0.47 Identities = 64/78 (82%) Strand = Plus / Minus Query: 317 ggtttccaagctgacggcggtggtgggggtgtcgggaacattgggggaactgctgagaag 376 ||||||||||| | ||||| ||||| || || |||||||| || || ||||| ||||| Sbjct: 1915 ggtttccaagcagctggcggaggtggtggagtagggaacatgggtggtactgcagagaat 1856 Query: 377 atggtgttcttatcaatt 394 || |||||||| |||||| Sbjct: 1855 atcgtgttcttgtcaatt 1838
>gb|AC091606.8| Mus Musculus Strain C57BL6/J chromosome X BAC, RP23-75P20, complete sequence Length = 234105 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Minus Query: 29 aaacaaaatgacttacaaaggtaccatt 56 ||||||||||||||||||| |||||||| Sbjct: 113998 aaacaaaatgacttacaaaagtaccatt 113971
>emb|AL671706.8| Mouse DNA sequence from clone RP23-330O24 on chromosome X, complete sequence Length = 192676 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Minus Query: 29 aaacaaaatgacttacaaaggtaccatt 56 ||||||||||||||||||| |||||||| Sbjct: 8957 aaacaaaatgacttacaaaagtaccatt 8930
>gb|DQ382355.1| Glycine max clone pSC12b endo-1,4-beta-glucancase precursor (Cel12) mRNA, partial cds Length = 517 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Minus Query: 335 ggtggtgggggtgtcgggaacattgggggaactgctgagaagatggt 381 |||||||| ||||| || |||||||||||||| || ||||| ||||| Sbjct: 121 ggtggtggcggtgtaggaaacattgggggaacagcagagaaaatggt 75
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 326 gctgacggcggtggtgggggtgtcggg 352 ||||||||||||||||| ||||||||| Sbjct: 272225 gctgacggcggtggtggaggtgtcggg 272199
>ref|XM_641937.1| Dictyostelium discoideum hypothetical protein (DDB0190095), partial mRNA Length = 6378 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 48 ggtaccatttctacaaaaagaa 69 |||||||||||||||||||||| Sbjct: 1800 ggtaccatttctacaaaaagaa 1821
>ref|NM_009513.1| Mus musculus vesicular membrane protein p24 (Vmp), mRNA Length = 2103 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 aaacaaaatgacttacaaagg 49 ||||||||||||||||||||| Sbjct: 1300 aaacaaaatgacttacaaagg 1280
>gb|BC052019.1| Mus musculus vesicular membrane protein p24, mRNA (cDNA clone MGC:62360 IMAGE:5708003), complete cds Length = 2005 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 aaacaaaatgacttacaaagg 49 ||||||||||||||||||||| Sbjct: 1170 aaacaaaatgacttacaaagg 1150
>emb|AL589766.17| Mouse DNA sequence from clone RP23-19G4 on chromosome 13 contains the Vmp gene for vesicular membrane protein P24, complete sequence Length = 176183 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 29 aaacaaaatgacttacaaagg 49 ||||||||||||||||||||| Sbjct: 22117 aaacaaaatgacttacaaagg 22137
>gb|DQ100342.1| Eucalyptus globulus endo-1,4-beta-glucanase (EG2) mRNA, partial cds Length = 1756 Score = 42.1 bits (21), Expect = 1.9 Identities = 83/104 (79%) Strand = Plus / Minus Query: 437 gcaaccaggccagcatttgctgcaagagtaggctctgtgtaattgtaatttgtgcggata 496 |||||||| || ||||| |||| ||||| || |||||||| ||||| || || |||| Sbjct: 1253 gcaaccagtcctgcattccctgcgagagtgggttctgtgtagttgtagttagtacggacg 1194 Query: 497 tctttgaagccatcatgcttgtcangcccagcaaccattgctcc 540 || | |||||| |||||||| || | || |||||||||||||| Sbjct: 1193 tcatggaagccgtcatgcttatcgggacctgcaaccattgctcc 1150
>gb|AC149070.3| Xenopus tropicalis clone ISB1-185H2, complete sequence Length = 99046 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 302 aatctgattcttcaaggtttccaag 326 ||||| ||||||||||||||||||| Sbjct: 92414 aatctaattcttcaaggtttccaag 92438 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 302 aatctgattcttcaaggtttccaag 326 ||||| ||||||||||||||||||| Sbjct: 79658 aatctaattcttcaaggtttccaag 79682
>dbj|AK138191.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230028N08 product:vesicular membrain protein p24, full insert sequence Length = 1432 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 aaacaaaatgacttacaaagg 49 ||||||||||||||||||||| Sbjct: 1278 aaacaaaatgacttacaaagg 1258
>dbj|AK153741.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630067I22 product:vesicular membrain protein p24, full insert sequence Length = 1892 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 aaacaaaatgacttacaaagg 49 ||||||||||||||||||||| Sbjct: 1255 aaacaaaatgacttacaaagg 1235
>dbj|AK160941.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:4021402L23 product:vesicular membrain protein p24, full insert sequence Length = 2122 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 aaacaaaatgacttacaaagg 49 ||||||||||||||||||||| Sbjct: 1332 aaacaaaatgacttacaaagg 1312
>gb|AC114729.4| Homo sapiens BAC clone RP13-916J2 from 2, complete sequence Length = 46894 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 aaggtaccatttctacaaaaa 66 ||||||||||||||||||||| Sbjct: 5703 aaggtaccatttctacaaaaa 5723
>gb|AC157084.1| Homo sapiens chromosome 2 clone fa1021, complete sequence Length = 39287 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 46 aaggtaccatttctacaaaaa 66 ||||||||||||||||||||| Sbjct: 19633 aaggtaccatttctacaaaaa 19613
>gb|AC026191.4| Homo sapiens chromosome 3 clone RP11-380O24 map 3p, complete sequence Length = 164528 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 gtaccatttctacaaaaagaa 69 ||||||||||||||||||||| Sbjct: 87498 gtaccatttctacaaaaagaa 87518
>dbj|D83206.1|MUSP2000 Mouse mRNA for P24 protein, complete cds Length = 2103 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 aaacaaaatgacttacaaagg 49 ||||||||||||||||||||| Sbjct: 1300 aaacaaaatgacttacaaagg 1280
>ref|NM_129561.2| Arabidopsis thaliana NRPD1b; DNA binding / DNA-directed RNA polymerase AT2G40030 (NRPD1b) mRNA, complete cds Length = 6106 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 369 ctgagaagatggtgttcttatcaa 392 ||||||||||||||| |||||||| Sbjct: 5413 ctgagaagatggtgtgcttatcaa 5390
>ref|XM_469698.1| Oryza sativa (japonica cultivar-group), mRNA Length = 11370 Score = 40.1 bits (20), Expect = 7.3 Identities = 25/27 (92%) Strand = Plus / Minus Query: 506 ccatcatgcttgtcangcccagcaacc 532 ||||||||||||||| | ||||||||| Sbjct: 8384 ccatcatgcttgtcaagaccagcaacc 8358
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 aaaacaaaatgacttacaaa 47 |||||||||||||||||||| Sbjct: 1396156 aaaacaaaatgacttacaaa 1396137
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 aaaacaaaatgacttacaaa 47 |||||||||||||||||||| Sbjct: 1372875 aaaacaaaatgacttacaaa 1372856
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 aaaacaaaatgacttacaaa 47 |||||||||||||||||||| Sbjct: 1372821 aaaacaaaatgacttacaaa 1372802
>gb|DQ020656.1| Arabidopsis thaliana RNA polymerase IV largest subunit (RPE1) mRNA, complete cds Length = 6348 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 369 ctgagaagatggtgttcttatcaa 392 ||||||||||||||| |||||||| Sbjct: 5653 ctgagaagatggtgtgcttatcaa 5630
>gb|AY826516.1| Arabidopsis thaliana DNA-directed RNA polymerase alpha subunit (NRPD1b) mRNA, complete cds Length = 5931 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 369 ctgagaagatggtgttcttatcaa 392 ||||||||||||||| |||||||| Sbjct: 5413 ctgagaagatggtgtgcttatcaa 5390
>gb|AY253447.1| Gossypium hirsutum endo-1,4-beta-glucanase mRNA, complete cds Length = 2031 Score = 40.1 bits (20), Expect = 7.3 Identities = 31/35 (88%) Strand = Plus / Minus Query: 506 ccatcatgcttgtcangcccagcaaccattgctcc 540 ||||||||||||||| | ||||| ||||| ||||| Sbjct: 1719 ccatcatgcttgtcaggtccagctaccatggctcc 1685
>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold Length = 1996640 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 62 aaaaagaacttcacacgtgaactt 85 ||||| |||||||||||||||||| Sbjct: 1803882 aaaaaaaacttcacacgtgaactt 1803859
>gb|AC121929.2| Mus musculus BAC clone RP24-204J10 from 5, complete sequence Length = 143840 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 tctgctttctgtttatggtc 239 |||||||||||||||||||| Sbjct: 120413 tctgctttctgtttatggtc 120394
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 aaaacaaaatgacttacaaa 47 |||||||||||||||||||| Sbjct: 1407534 aaaacaaaatgacttacaaa 1407515
>gb|AC166553.2| Nectria haematococca clone JGIAYWI-9O2, complete sequence Length = 38247 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 atatgaagaacaacaaggac 108 |||||||||||||||||||| Sbjct: 8136 atatgaagaacaacaaggac 8117
>gb|AC008769.7| Homo sapiens chromosome 5 clone CTD-2006B8, complete sequence Length = 147305 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 taaaacaaaatgacttacaa 46 |||||||||||||||||||| Sbjct: 106965 taaaacaaaatgacttacaa 106984
>emb|Y15839.1|CHY15839 Cochliobolus heterostrophus pkc1, fat1 genes Length = 9313 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 252 caaacaaccatctgttgctccctc 275 ||||||||||||| |||||||||| Sbjct: 6037 caaacaaccatcttttgctccctc 6014
>emb|CR932397.9| Zebrafish DNA sequence from clone CH211-123E19 in linkage group 13, complete sequence Length = 173825 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 ctctgtgtaattgtaatttg 488 |||||||||||||||||||| Sbjct: 70477 ctctgtgtaattgtaatttg 70496
>gb|AY927744.1| Arabidopsis thaliana DNA-dependent RNA polymerase large subunit (NRPD1b/DRD3) mRNA, complete cds Length = 5931 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 369 ctgagaagatggtgttcttatcaa 392 ||||||||||||||| |||||||| Sbjct: 5413 ctgagaagatggtgtgcttatcaa 5390
>gb|AF002109.3| Arabidopsis thaliana chromosome 2 clone T28M21 map CIC10A06, complete sequence Length = 108847 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 369 ctgagaagatggtgttcttatcaa 392 ||||||||||||||| |||||||| Sbjct: 91549 ctgagaagatggtgtgcttatcaa 91526
>gb|AC146015.4| Pan troglodytes BAC clone RP43-129D8 from chromosome 7, complete sequence Length = 151463 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 catttctacaaaaagaactt 72 |||||||||||||||||||| Sbjct: 96901 catttctacaaaaagaactt 96882
>gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genomic sequence, complete sequence Length = 130359 Score = 40.1 bits (20), Expect = 7.3 Identities = 25/27 (92%) Strand = Plus / Plus Query: 506 ccatcatgcttgtcangcccagcaacc 532 ||||||||||||||| | ||||||||| Sbjct: 68261 ccatcatgcttgtcaagaccagcaacc 68287
>emb|AL929184.7| Zebrafish DNA sequence from clone CH211-125N20, complete sequence Length = 168257 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 tgttgtctgctttctgttta 234 |||||||||||||||||||| Sbjct: 19297 tgttgtctgctttctgttta 19278
>gb|CP000033.1| Lactobacillus acidophilus NCFM, complete genome Length = 1993564 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 420 ctaaagaaatcaatgctgcaacca 443 ||||||||||||||| |||||||| Sbjct: 1606577 ctaaagaaatcaatgatgcaacca 1606554
>gb|AC145183.3| Macropus eugenii clone ME_KBa-60J17, complete sequence Length = 168360 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 62 aaaaagaacttcacacgtgaactt 85 ||||| |||||||||||||||||| Sbjct: 89613 aaaaaaaacttcacacgtgaactt 89590
>emb|CR848789.11| Zebrafish DNA sequence from clone DKEYP-114B4 in linkage group 16, complete sequence Length = 195410 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 tgttgtctgctttctgttta 234 |||||||||||||||||||| Sbjct: 113755 tgttgtctgctttctgttta 113774
>gb|DQ119551.1| Opisthorchis viverrini NADH dehydrogenase subunit 1 gene, partial cds; tRNA-Asn, tRNA-Pro, tRNA-Ile, and tRNA-Lys genes, complete sequence; and NADH dehydrogenase subunit 3 gene, complete cds; mitochondrial Length = 1357 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 472 tgtgtaattgtaatttgtgc 491 |||||||||||||||||||| Sbjct: 246 tgtgtaattgtaatttgtgc 265
>gb|AC133519.3| Mus musculus BAC clone RP23-178N8 from chromosome 5, complete sequence Length = 219269 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 tctgctttctgtttatggtc 239 |||||||||||||||||||| Sbjct: 72639 tctgctttctgtttatggtc 72620
>gb|AF511408.1| Gossypium hirsutum endo-1,4-beta-glucanase mRNA, complete cds Length = 2282 Score = 40.1 bits (20), Expect = 7.3 Identities = 31/35 (88%) Strand = Plus / Minus Query: 506 ccatcatgcttgtcangcccagcaaccattgctcc 540 ||||||||||||||| | ||||| ||||| ||||| Sbjct: 1752 ccatcatgcttgtcaggtccagctaccatggctcc 1718
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 agcttatgttgtctgctttc 228 |||||||||||||||||||| Sbjct: 4122854 agcttatgttgtctgctttc 4122835
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 aaaacaaaatgacttacaaa 47 |||||||||||||||||||| Sbjct: 1372752 aaaacaaaatgacttacaaa 1372733
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 aaaacaaaatgacttacaaa 47 |||||||||||||||||||| Sbjct: 1528684 aaaacaaaatgacttacaaa 1528665
>gb|L27342.1|CHKPP40X Chicken I kappa B-alpha gene, partial cds Length = 1605 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 441 ccaggccagcatttgctgcaagag 464 ||||||||||| |||||||||||| Sbjct: 292 ccaggccagcaattgctgcaagag 315
>emb|AL645583.12| Mouse DNA sequence from clone RP23-12N20 on chromosome 11, complete sequence Length = 67643 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 tgttgtctgctttctgttta 234 |||||||||||||||||||| Sbjct: 23450 tgttgtctgctttctgttta 23469
>gb|AC124634.24| Mus musculus chromosome 18, clone RP23-450K16, complete sequence Length = 178989 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 ggtggtgggggtgtcgggaa 354 |||||||||||||||||||| Sbjct: 100812 ggtggtgggggtgtcgggaa 100793 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,012,621 Number of Sequences: 3902068 Number of extensions: 6012621 Number of successful extensions: 117792 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117157 Number of HSP's gapped (non-prelim): 616 length of query: 540 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 517 effective length of database: 17,143,297,704 effective search space: 8863084912968 effective search space used: 8863084912968 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)