>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
          Length = 439641

 Score =  408 bits (206), Expect = e-111
 Identities = 230/238 (96%)
 Strand = Plus / Minus

                                                                         
Query: 144   cccgttccttcctatgcatcgcctctcccgcgagcagcgagttgaactacgcaagaggaa 203
             |||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||
Sbjct: 42383 cccgttccttcctatgcatcgcctctcccgcgcgcaacgagttgaactgcgcaagaggaa 42324

                                                                         
Query: 204   acaaagaaacgctgaggaacgcactccagtccagacgagttgggcgcctcccttgtctcc 263
             || |||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 42323 accaagaaacgctcaggaacgcactccagtccaaacgagttgggcgcctccctcgtctcc 42264

                                                                         
Query: 264   gccaccgcgggtccggctccattggagggggcgtaggagcgctcatgggccggttcttgg 323
             ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 42263 gccaccgcgggtccggctccattggagggggcgtaggagcgctcatgggtcggttcttgg 42204

                                                                       
Query: 324   tcgcggccgtcctcgcccggttctgctgctcctgaaccggacggttccatcacgaatc 381
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42203 tcgcggccgtcctcgcccggttctgctgctcctgaaccggacggttccatcacgaatc 42146

>gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete
             sequence
          Length = 130272

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 527   acctgggtgagcgggttgtcttggggccctctggactggaagccgga 573
             ||||||| ||| || ||| | ||||| ||||||||||||||||||||
Sbjct: 94607 acctgggcgaggggattggcctgggggcctctggactggaagccgga 94653

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                               
Query: 527      acctgggtgagcgggttgtcttggggccctctggactggaagccgga 573
                ||||||| ||| || ||| | ||||| ||||||||||||||||||||
Sbjct: 35093706 acctgggcgaggggattggcctgggggcctctggactggaagccgga 35093752

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                               
Query: 527      acctgggtgagcgggttgtcttggggccctctggactggaagccgga 573
                ||||||| ||| || ||| | ||||| ||||||||||||||||||||
Sbjct: 35183778 acctgggcgaggggattggcctgggggcctctggactggaagccgga 35183824

>emb|AL670660.8| Mouse DNA sequence from clone RP23-265D6 on chromosome X, complete
             sequence
          Length = 181805

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 464   tctccctgttgtctgctctgttgttgtttg 493
             |||||||||||| || ||||||||||||||
Sbjct: 47512 tctccctgttgtttgttctgttgttgtttg 47541

>gb|AC053466.6| Homo sapiens chromosome 10 clone RP11-491G3, complete sequence
          Length = 172885

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 58    aatatataatatgcattcttggata 82
             ||||||||||||| |||||||||||
Sbjct: 53154 aatatataatatgtattcttggata 53178

>gb|AC183540.2| Pan troglodytes BAC clone CH251-324O24 from chromosome 7, complete
             sequence
          Length = 176962

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 35    aaagcagatatgtctattattacaa 59
             ||||||||||| |||||||||||||
Sbjct: 99575 aaagcagatatatctattattacaa 99599

>emb|CR352225.13| Zebrafish DNA sequence from clone CH211-110E21 in linkage group 3,
             complete sequence
          Length = 60807

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 528   cctgggtgagcgggttgtcttgggg 552
             ||||||||||||||| |||||||||
Sbjct: 23052 cctgggtgagcgggtggtcttgggg 23076

>emb|BX927098.24| Zebrafish DNA sequence from clone DKEY-228D14 in linkage group 13,
              complete sequence
          Length = 229413

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 449    atttgtctgaaagaatctccc 469
              |||||||||||||||||||||
Sbjct: 146529 atttgtctgaaagaatctccc 146549

>gb|AC087310.9| Homo sapiens 12p BAC RP11-681I19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 109567

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 195   caagaggaaacaaagaaacgctgaggaac 223
             |||||||||||||||||| || |||||||
Sbjct: 59834 caagaggaaacaaagaaaagcagaggaac 59806

>gb|AC068185.9| Homo sapiens chromosome 11, clone RP11-330I10, complete sequence
          Length = 174189

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 58     aatatataatatgcattcttggata 82
              ||||||||||||| |||||||||||
Sbjct: 109961 aatatataatatgtattcttggata 109937

>gb|AC009866.6| Homo sapiens chromosome 11, clone RP11-61E7, complete sequence
          Length = 177564

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 58     aatatataatatgcattcttggata 82
              ||||||||||||| |||||||||||
Sbjct: 165094 aatatataatatgtattcttggata 165118

>gb|AC159468.4| Mus musculus 10 BAC RP23-335A3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 214532

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 42     atatgtctattattacaatatataa 66
              |||||| ||||||||||||||||||
Sbjct: 145114 atatgtgtattattacaatatataa 145138

>gb|AC010886.10| Homo sapiens BAC clone RP11-370K6 from 2, complete sequence
          Length = 158787

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 73    ttcttggataagtattgcttc 93
             |||||||||||||||||||||
Sbjct: 23882 ttcttggataagtattgcttc 23902

>gb|AC116487.14| Mus musculus chromosome 15, clone RP23-428I9, complete sequence
          Length = 174945

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 486   gttgtttgcaggagaggaac 505
             ||||||||||||||||||||
Sbjct: 20435 gttgtttgcaggagaggaac 20416

>gb|CP000107.1| Ehrlichia canis str. Jake, complete genome
          Length = 1315030

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 472    ttgtctgctctgttgttgtt 491
              ||||||||||||||||||||
Sbjct: 416178 ttgtctgctctgttgttgtt 416197

>emb|AL591766.20| Human DNA sequence from clone RP11-429N14 on chromosome X Contains
            the 5' end of the PRKWNK3 gene for lysine deficient
            protein kinase 3 and a CpG island, complete sequence
          Length = 73084

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 556  tctggactggaagccggaaa 575
            ||||||||||||||||||||
Sbjct: 2458 tctggactggaagccggaaa 2477

>gb|AC108710.3| Homo sapiens 3p BAC RP11-88I7 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 186799

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     tattacaatatataatatgc 71
              ||||||||||||||||||||
Sbjct: 171608 tattacaatatataatatgc 171627

>emb|AL662838.12| Mouse DNA sequence from clone RP23-378I13 on chromosome 11 Contains the
              3' end of the Mbtd1 gene for mbt domain containing 1, the
              Nme2 gene for expressed in non-metastatic cells 2 protein,
              the Nme1 gene for expressed in non-metastatic cells 1
              protein, the Spag9 gene for sperm associated antigen 9 and
              a ribosomal protein L27 (Rpl27) pseudogene, complete
              sequence
          Length = 215435

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     cagatatgtctattattaca 58
              ||||||||||||||||||||
Sbjct: 173281 cagatatgtctattattaca 173262

>gb|AY279089.1| Desulfovibrio vulgaris alkyl hydroperoxide reductase F (ahpF) gene,
            complete cds
          Length = 1740

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 356  tgaaccggacggttccatca 375
            ||||||||||||||||||||
Sbjct: 1554 tgaaccggacggttccatca 1573

>emb|X65265.1|ECOUTDNA E.chrysanthemi genes outS, outB, outC, outD and outT
          Length = 6068

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 323  gtcgcggccgtcctcgcccggttc 346
            ||||||||||||||||||| ||||
Sbjct: 4554 gtcgcggccgtcctcgccccgttc 4577

>gb|AC024890.20| Homo sapiens 3 BAC RP11-389A20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172117

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     tattacaatatataatatgc 71
              ||||||||||||||||||||
Sbjct: 169174 tattacaatatataatatgc 169193

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 325     cgcggccgtcctcgcccggttctg 348
               |||||||| |||||||||||||||
Sbjct: 3663812 cgcggccgacctcgcccggttctg 3663789

>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete
              genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 356    tgaaccggacggttccatca 375
              ||||||||||||||||||||
Sbjct: 328956 tgaaccggacggttccatca 328937

>emb|AL672153.3| Mouse DNA sequence from clone RP23-8C14 on chromosome 2, complete
             sequence
          Length = 137628

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 473   tgtctgctctgttgttgttt 492
             ||||||||||||||||||||
Sbjct: 15265 tgtctgctctgttgttgttt 15284

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 58       aatatataatatgcattctt 77
                ||||||||||||||||||||
Sbjct: 20796872 aatatataatatgcattctt 20796891

>gb|AC068044.5| Homo sapiens BAC clone RP11-413N15 from 2, complete sequence
          Length = 182411

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 44    atgtctattattacaatatataat 67
             |||| |||||||||||||||||||
Sbjct: 64289 atgtatattattacaatatataat 64266

>gb|AC117471.6| Homo sapiens 3 BAC RP11-558J4 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 82165

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 55   tacaatatataatatgcatt 74
            ||||||||||||||||||||
Sbjct: 6214 tacaatatataatatgcatt 6195

>dbj|AP006753.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OSJNBa0039D04
          Length = 184408

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   aatatataatatgcattctt 77
            ||||||||||||||||||||
Sbjct: 7662 aatatataatatgcattctt 7681

>dbj|AB026658.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24
          Length = 88989

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 482   tgttgttgtttgcaggagag 501
             ||||||||||||||||||||
Sbjct: 86484 tgttgttgtttgcaggagag 86465

>dbj|AB015476.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNC6
          Length = 82952

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 113  ttcgcacttcaactttctta 132
            ||||||||||||||||||||
Sbjct: 5748 ttcgcacttcaactttctta 5729

>gb|AC110211.16| Mus musculus chromosome 15, clone RP23-192B21, complete sequence
          Length = 202844

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 486  gttgtttgcaggagaggaac 505
            ||||||||||||||||||||
Sbjct: 6094 gttgtttgcaggagaggaac 6113

>gb|AF003005.1|AF003005 Arabidopsis thaliana MutS homolog 2 (atMSH2) gene, complete cds
          Length = 5317

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 482  tgttgttgtttgcaggagag 501
            ||||||||||||||||||||
Sbjct: 4731 tgttgttgtttgcaggagag 4750


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,245,281
Number of Sequences: 3902068
Number of extensions: 5245281
Number of successful extensions: 100900
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100706
Number of HSP's gapped (non-prelim): 194
length of query: 630
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 607
effective length of database: 17,143,297,704
effective search space: 10405981706328
effective search space used: 10405981706328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)