ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18d21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 101 3e-18
2gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome... 101 3e-18
3gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare str... 101 3e-18
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
5dbj|AK066080.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
6gb|AY108718.1| Zea mays PCO111663 mRNA sequence 70 1e-08
7ref|XM_479462.1| Oryza sativa (japonica cultivar-group), mRNA 66 2e-07
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 66 2e-07
9dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic D... 66 2e-07
10dbj|AK067933.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 4e-05
11ref|XM_475133.1| Oryza sativa (japonica cultivar-group), predic... 44 0.55
12gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.55
13dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.55
14dbj|AK058953.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.55
15emb|AL591423.6| Human DNA sequence from clone RP11-134P18 on chr... 42 2.2
16gb|AC011701.22|AC011701 Homo sapiens 12 BAC RP11-937I21 (Roswell... 42 2.2
17ref|XM_470243.1| Oryza sativa (japonica cultivar-group), predic... 40 8.6
18gb|AC002551.1|HUAC002551 Human Chromosome 16 BAC clone CIT987SK-... 40 8.6
19gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 8.6
20gb|AC011448.5| Homo sapiens chromosome 19 clone CTC-260F20, comp... 40 8.6
21gb|AC105730.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.6
22gb|BC109639.1| Bos taurus transcription factor-like 1, mRNA (cDN... 40 8.6
23gb|AY268590.1| Homo sapiens BCL2/adenovirus E1B 19kDa interactin... 40 8.6
24gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.6
25dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
26ref|NM_001015658.1| Bos taurus transcription factor-like 1 (TCFL... 40 8.6
27gb|AC092755.4| Homo sapiens chromosome 15 clone RP11-361D15 map ... 40 8.6
28dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
29dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 8.6
30dbj|AK105367.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.6
31gb|BT020964.1| Bos taurus transcription factor-like 1 (TCFL1), m... 40 8.6
32emb|AL929315.8| Zebrafish DNA sequence from clone CH211-69K21, c... 40 8.6

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  101 bits (51), Expect = 3e-18
 Identities = 81/91 (89%)
 Strand = Plus / Plus

                                                                            
Query: 270      cgtcccgggcgggctgtagtagtcttggtagtaggactccggcgacgcgtgcgggtacgg 329
                |||||| |||||||||||||||||  |||||||||  |||||||||| ||||||||||||
Sbjct: 12880866 cgtccccggcgggctgtagtagtcgcggtagtaggtgtccggcgacgagtgcgggtacgg 12880925

                                               
Query: 330      catgtataggtatgatggcgaccattgctgc 360
                |||||| ||||| || |||||||| ||||||
Sbjct: 12880926 catgtacaggtacgacggcgaccactgctgc 12880956



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Plus

                                                                            
Query: 449      gctccggctgcggcgcgtagtgggacacgctggctctcggctgcgccatgttgtagctca 508
                |||||||| |||||||||||| ||| ||||| |   ||||||||||||||| ||||||||
Sbjct: 12881066 gctccggccgcggcgcgtagtaggagacgctcgtcgtcggctgcgccatgtggtagctca 12881125

                                 
Query: 509      tcaccggctgcggcgcg 525
                |||||||||||||||||
Sbjct: 12881126 tcaccggctgcggcgcg 12881142



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                       
Query: 183      tcacatgacgctgcacgagttggggttctcgtcgtcgaa 221
                ||||||||||||||| | |||||||||||||||||||||
Sbjct: 12880791 tcacatgacgctgcaggcgttggggttctcgtcgtcgaa 12880829



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 185     acatgacgctgcacgagttggggttctcgtcg 216
               ||||||||  ||| ||||||||||||||||||
Sbjct: 3028744 acatgacggcgcaggagttggggttctcgtcg 3028775



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>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06,
              complete sequence
          Length = 132243

 Score =  101 bits (51), Expect = 3e-18
 Identities = 81/91 (89%)
 Strand = Plus / Plus

                                                                          
Query: 270    cgtcccgggcgggctgtagtagtcttggtagtaggactccggcgacgcgtgcgggtacgg 329
              |||||| |||||||||||||||||  |||||||||  |||||||||| ||||||||||||
Sbjct: 119082 cgtccccggcgggctgtagtagtcgcggtagtaggtgtccggcgacgagtgcgggtacgg 119141

                                             
Query: 330    catgtataggtatgatggcgaccattgctgc 360
              |||||| ||||| || |||||||| ||||||
Sbjct: 119142 catgtacaggtacgacggcgaccactgctgc 119172



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Plus

                                                                          
Query: 449    gctccggctgcggcgcgtagtgggacacgctggctctcggctgcgccatgttgtagctca 508
              |||||||| |||||||||||| ||| ||||| |   ||||||||||||||| ||||||||
Sbjct: 119282 gctccggccgcggcgcgtagtaggagacgctcgtcgtcggctgcgccatgtggtagctca 119341

                               
Query: 509    tcaccggctgcggcgcg 525
              |||||||||||||||||
Sbjct: 119342 tcaccggctgcggcgcg 119358



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                     
Query: 183    tcacatgacgctgcacgagttggggttctcgtcgtcgaa 221
              ||||||||||||||| | |||||||||||||||||||||
Sbjct: 119007 tcacatgacgctgcaggcgttggggttctcgtcgtcgaa 119045



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>gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0094H06, from chromosome 3, complete sequence
          Length = 118075

 Score =  101 bits (51), Expect = 3e-18
 Identities = 81/91 (89%)
 Strand = Plus / Minus

                                                                         
Query: 270   cgtcccgggcgggctgtagtagtcttggtagtaggactccggcgacgcgtgcgggtacgg 329
             |||||| |||||||||||||||||  |||||||||  |||||||||| ||||||||||||
Sbjct: 58643 cgtccccggcgggctgtagtagtcgcggtagtaggtgtccggcgacgagtgcgggtacgg 58584

                                            
Query: 330   catgtataggtatgatggcgaccattgctgc 360
             |||||| ||||| || |||||||| ||||||
Sbjct: 58583 catgtacaggtacgacggcgaccactgctgc 58553



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                         
Query: 449   gctccggctgcggcgcgtagtgggacacgctggctctcggctgcgccatgttgtagctca 508
             |||||||| |||||||||||| ||| ||||| |   ||||||||||||||| ||||||||
Sbjct: 58443 gctccggccgcggcgcgtagtaggagacgctcgtcgtcggctgcgccatgtggtagctca 58384

                              
Query: 509   tcaccggctgcggcgcg 525
             |||||||||||||||||
Sbjct: 58383 tcaccggctgcggcgcg 58367



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                    
Query: 183   tcacatgacgctgcacgagttggggttctcgtcgtcgaa 221
             ||||||||||||||| | |||||||||||||||||||||
Sbjct: 58718 tcacatgacgctgcaggcgttggggttctcgtcgtcgaa 58680



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  101 bits (51), Expect = 3e-18
 Identities = 81/91 (89%)
 Strand = Plus / Plus

                                                                            
Query: 270      cgtcccgggcgggctgtagtagtcttggtagtaggactccggcgacgcgtgcgggtacgg 329
                |||||| |||||||||||||||||  |||||||||  |||||||||| ||||||||||||
Sbjct: 12877629 cgtccccggcgggctgtagtagtcgcggtagtaggtgtccggcgacgagtgcgggtacgg 12877688

                                               
Query: 330      catgtataggtatgatggcgaccattgctgc 360
                |||||| ||||| || |||||||| ||||||
Sbjct: 12877689 catgtacaggtacgacggcgaccactgctgc 12877719



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Plus

                                                                            
Query: 449      gctccggctgcggcgcgtagtgggacacgctggctctcggctgcgccatgttgtagctca 508
                |||||||| |||||||||||| ||| ||||| |   ||||||||||||||| ||||||||
Sbjct: 12877829 gctccggccgcggcgcgtagtaggagacgctcgtcgtcggctgcgccatgtggtagctca 12877888

                                 
Query: 509      tcaccggctgcggcgcg 525
                |||||||||||||||||
Sbjct: 12877889 tcaccggctgcggcgcg 12877905



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                       
Query: 183      tcacatgacgctgcacgagttggggttctcgtcgtcgaa 221
                ||||||||||||||| | |||||||||||||||||||||
Sbjct: 12877554 tcacatgacgctgcaggcgttggggttctcgtcgtcgaa 12877592



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 185     acatgacgctgcacgagttggggttctcgtcg 216
               ||||||||  ||| ||||||||||||||||||
Sbjct: 3028855 acatgacggcgcaggagttggggttctcgtcg 3028886



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>dbj|AK066080.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051K22, full
           insert sequence
          Length = 1071

 Score =  101 bits (51), Expect = 3e-18
 Identities = 81/91 (89%)
 Strand = Plus / Minus

                                                                       
Query: 270 cgtcccgggcgggctgtagtagtcttggtagtaggactccggcgacgcgtgcgggtacgg 329
           |||||| |||||||||||||||||  |||||||||  |||||||||| ||||||||||||
Sbjct: 684 cgtccccggcgggctgtagtagtcgcggtagtaggtgtccggcgacgagtgcgggtacgg 625

                                          
Query: 330 catgtataggtatgatggcgaccattgctgc 360
           |||||| ||||| || |||||||| ||||||
Sbjct: 624 catgtacaggtacgacggcgaccactgctgc 594



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                       
Query: 449 gctccggctgcggcgcgtagtgggacacgctggctctcggctgcgccatgttgtagctca 508
           |||||||| |||||||||||| ||| ||||| |   ||||||||||||||| ||||||||
Sbjct: 484 gctccggccgcggcgcgtagtaggagacgctcgtcgtcggctgcgccatgtggtagctca 425

                            
Query: 509 tcaccggctgcggcgcg 525
           |||||||||||||||||
Sbjct: 424 tcaccggctgcggcgcg 408



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                  
Query: 183 tcacatgacgctgcacgagttggggttctcgtcgtcgaa 221
           ||||||||||||||| | |||||||||||||||||||||
Sbjct: 759 tcacatgacgctgcaggcgttggggttctcgtcgtcgaa 721



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>gb|AY108718.1| Zea mays PCO111663 mRNA sequence
          Length = 435

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                  
Query: 183 tcacatgacgctgcacgagttggggttctcgtcgtcgaa 221
           ||||||||||||||| |||||||||||||||||||||||
Sbjct: 251 tcacatgacgctgcaggagttggggttctcgtcgtcgaa 213



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 85/102 (83%), Gaps = 6/102 (5%)
 Strand = Plus / Minus

                                                                       
Query: 263 acgcgttcgtcccgggcgggctgtagtagtc---ttggtagtaggactccggcgac---g 316
           |||||| | |||||||||||| |||||||||    |||||||| | |||||||| |   |
Sbjct: 183 acgcgtgcatcccgggcgggccgtagtagtcctgctggtagtaaggctccggcgccgcgg 124

                                                     
Query: 317 cgtgcgggtacggcatgtataggtatgatggcgaccattgct 358
           ||||||||||||||||||| ||||| || |||||||| ||||
Sbjct: 123 cgtgcgggtacggcatgtacaggtacgacggcgaccactgct 82



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>ref|XM_479462.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1243

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                
Query: 471 ggacacgctggctctcggctgcgccatgttgtagctcatcaccggctgcggcg 523
           ||||||||| || ||||| |||||||  |||||||||||||||||||||||||
Sbjct: 781 ggacacgctcgcgctcgggtgcgccacattgtagctcatcaccggctgcggcg 729



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                     
Query: 471      ggacacgctggctctcggctgcgccatgttgtagctcatcaccggctgcggcg 523
                ||||||||| || ||||| |||||||  |||||||||||||||||||||||||
Sbjct: 28330083 ggacacgctcgcgctcgggtgcgccacattgtagctcatcaccggctgcggcg 28330031



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>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0470D12
          Length = 157248

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                  
Query: 471   ggacacgctggctctcggctgcgccatgttgtagctcatcaccggctgcggcg 523
             ||||||||| || ||||| |||||||  |||||||||||||||||||||||||
Sbjct: 55646 ggacacgctcgcgctcgggtgcgccacattgtagctcatcaccggctgcggcg 55594



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>dbj|AK067933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128A09, full
           insert sequence
          Length = 1243

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 471 ggacacgctggctctcggctgcgccatgttgtagctcatcaccggctgcggcg 523
           ||||||||| || ||||| |||||||  ||||||||||||||||||| |||||
Sbjct: 781 ggacacgctcgcgctcgggtgcgccacattgtagctcatcaccggcttcggcg 729



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>ref|XM_475133.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1023

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 183  tcacatgacgctgcacgagttggggttctcgtcg 216
            ||||||||||||||| ||||||| ||| ||||||
Sbjct: 1023 tcacatgacgctgcaagagttggcgttgtcgtcg 990



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>gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1393_A07,
              complete sequence
          Length = 159932

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 183    tcacatgacgctgcacgagttggggttctcgtcg 216
              ||||||||||||||| ||||||| ||| ||||||
Sbjct: 100076 tcacatgacgctgcaagagttggcgttgtcgtcg 100109



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                  
Query: 183      tcacatgacgctgcacgagttggggttctcgtcg 216
                ||||||||||||||| ||||||| ||| ||||||
Sbjct: 17570271 tcacatgacgctgcaagagttggcgttgtcgtcg 17570304



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>dbj|AK058953.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-A11, full
            insert sequence
          Length = 1133

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 183  tcacatgacgctgcacgagttggggttctcgtcg 216
            ||||||||||||||| ||||||| ||| ||||||
Sbjct: 1087 tcacatgacgctgcaagagttggcgttgtcgtcg 1054



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>emb|AL591423.6| Human DNA sequence from clone RP11-134P18 on chromosome 9 Contains a
             novel gene, the 5' end of a novel gene and a CpG island,
             complete sequence
          Length = 54193

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 136   ccagagaggtctctgttacga 156
             |||||||||||||||||||||
Sbjct: 17702 ccagagaggtctctgttacga 17682



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>gb|AC011701.22|AC011701 Homo sapiens 12 BAC RP11-937I21 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 205510

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 136    ccagagaggtctctgttacga 156
              |||||||||||||||||||||
Sbjct: 128114 ccagagaggtctctgttacga 128134



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>ref|XM_470243.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 468

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 185 acatgacgctgcacgagttggggttctcgtcg 216
           ||||||||  ||| ||||||||||||||||||
Sbjct: 466 acatgacggcgcaggagttggggttctcgtcg 435



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>gb|AC002551.1|HUAC002551 Human Chromosome 16 BAC clone CIT987SK-A-951C11, complete sequence
          Length = 114411

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 385   gcctgctgcgccggtgagtgctgc 408
             |||||||||||||||| |||||||
Sbjct: 71876 gcctgctgcgccggtgtgtgctgc 71899



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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 506     tcatcaccggctgcggcgcg 525
               ||||||||||||||||||||
Sbjct: 3309933 tcatcaccggctgcggcgcg 3309914



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>gb|AC011448.5| Homo sapiens chromosome 19 clone CTC-260F20, complete sequence
          Length = 165122

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   tccctccttggtcacatgac 191
             ||||||||||||||||||||
Sbjct: 51530 tccctccttggtcacatgac 51511



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>gb|AC105730.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0011L14, complete sequence
          Length = 117974

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 185   acatgacgctgcacgagttggggttctcgtcg 216
             ||||||||  ||| ||||||||||||||||||
Sbjct: 67517 acatgacggcgcaggagttggggttctcgtcg 67486



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>gb|BC109639.1| Bos taurus transcription factor-like 1, mRNA (cDNA clone MGC:134217
           IMAGE:8050148), complete cds
          Length = 1325

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 357 ctgcattggctgcgcgtgctggga 380
           ||||||||||||| ||||||||||
Sbjct: 753 ctgcattggctgcccgtgctggga 776



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>gb|AY268590.1| Homo sapiens BCL2/adenovirus E1B 19kDa interacting protein 2 (BNIP2)
            gene, complete cds
          Length = 27985

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 4    ctctatttagaacagaaatagtag 27
            |||| |||||||||||||||||||
Sbjct: 5139 ctctgtttagaacagaaatagtag 5116



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>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0016I15,
              complete sequence
          Length = 166282

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 185    acatgacgctgcacgagttggggttctcgtcg 216
              ||||||||  ||| ||||||||||||||||||
Sbjct: 166231 acatgacggcgcaggagttggggttctcgtcg 166262



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 7        tatttagaacagaaatagta 26
                ||||||||||||||||||||
Sbjct: 28403761 tatttagaacagaaatagta 28403780



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>ref|NM_001015658.1| Bos taurus transcription factor-like 1 (TCFL1), mRNA
          Length = 1347

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 357 ctgcattggctgcgcgtgctggga 380
           ||||||||||||| ||||||||||
Sbjct: 788 ctgcattggctgcccgtgctggga 811



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>gb|AC092755.4| Homo sapiens chromosome 15 clone RP11-361D15 map 15q22, complete sequence
          Length = 187429

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 4      ctctatttagaacagaaatagtag 27
              |||| |||||||||||||||||||
Sbjct: 106504 ctctgtttagaacagaaatagtag 106527



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>dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0519D04
          Length = 193068

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      tatttagaacagaaatagta 26
              ||||||||||||||||||||
Sbjct: 118861 tatttagaacagaaatagta 118880



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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 511    accggctgcggcgcgttgta 530
              ||||||||||||||||||||
Sbjct: 898633 accggctgcggcgcgttgta 898614



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>dbj|AK105367.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-G06, full
           insert sequence
          Length = 822

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 185 acatgacgctgcacgagttggggttctcgtcg 216
           ||||||||  ||| ||||||||||||||||||
Sbjct: 545 acatgacggcgcaggagttggggttctcgtcg 514



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>gb|BT020964.1| Bos taurus transcription factor-like 1 (TCFL1), mRNA, complete cds
          Length = 1347

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 357 ctgcattggctgcgcgtgctggga 380
           ||||||||||||| ||||||||||
Sbjct: 788 ctgcattggctgcccgtgctggga 811



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>emb|AL929315.8| Zebrafish DNA sequence from clone CH211-69K21, complete sequence
          Length = 174143

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      tatttagaacagaaatagta 26
              ||||||||||||||||||||
Sbjct: 173249 tatttagaacagaaatagta 173230



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      tatttagaacagaaatagta 26
              ||||||||||||||||||||
Sbjct: 171378 tatttagaacagaaatagta 171359


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,216,271
Number of Sequences: 3902068
Number of extensions: 3216271
Number of successful extensions: 63628
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63193
Number of HSP's gapped (non-prelim): 430
length of query: 634
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 611
effective length of database: 17,143,297,704
effective search space: 10474554897144
effective search space used: 10474554897144
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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