Clone Name | rbasd18d21 |
---|---|
Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 101 bits (51), Expect = 3e-18 Identities = 81/91 (89%) Strand = Plus / Plus Query: 270 cgtcccgggcgggctgtagtagtcttggtagtaggactccggcgacgcgtgcgggtacgg 329 |||||| ||||||||||||||||| ||||||||| |||||||||| |||||||||||| Sbjct: 12880866 cgtccccggcgggctgtagtagtcgcggtagtaggtgtccggcgacgagtgcgggtacgg 12880925 Query: 330 catgtataggtatgatggcgaccattgctgc 360 |||||| ||||| || |||||||| |||||| Sbjct: 12880926 catgtacaggtacgacggcgaccactgctgc 12880956 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Plus Query: 449 gctccggctgcggcgcgtagtgggacacgctggctctcggctgcgccatgttgtagctca 508 |||||||| |||||||||||| ||| ||||| | ||||||||||||||| |||||||| Sbjct: 12881066 gctccggccgcggcgcgtagtaggagacgctcgtcgtcggctgcgccatgtggtagctca 12881125 Query: 509 tcaccggctgcggcgcg 525 ||||||||||||||||| Sbjct: 12881126 tcaccggctgcggcgcg 12881142 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 183 tcacatgacgctgcacgagttggggttctcgtcgtcgaa 221 ||||||||||||||| | ||||||||||||||||||||| Sbjct: 12880791 tcacatgacgctgcaggcgttggggttctcgtcgtcgaa 12880829 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 185 acatgacgctgcacgagttggggttctcgtcg 216 |||||||| ||| |||||||||||||||||| Sbjct: 3028744 acatgacggcgcaggagttggggttctcgtcg 3028775
>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06, complete sequence Length = 132243 Score = 101 bits (51), Expect = 3e-18 Identities = 81/91 (89%) Strand = Plus / Plus Query: 270 cgtcccgggcgggctgtagtagtcttggtagtaggactccggcgacgcgtgcgggtacgg 329 |||||| ||||||||||||||||| ||||||||| |||||||||| |||||||||||| Sbjct: 119082 cgtccccggcgggctgtagtagtcgcggtagtaggtgtccggcgacgagtgcgggtacgg 119141 Query: 330 catgtataggtatgatggcgaccattgctgc 360 |||||| ||||| || |||||||| |||||| Sbjct: 119142 catgtacaggtacgacggcgaccactgctgc 119172 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Plus Query: 449 gctccggctgcggcgcgtagtgggacacgctggctctcggctgcgccatgttgtagctca 508 |||||||| |||||||||||| ||| ||||| | ||||||||||||||| |||||||| Sbjct: 119282 gctccggccgcggcgcgtagtaggagacgctcgtcgtcggctgcgccatgtggtagctca 119341 Query: 509 tcaccggctgcggcgcg 525 ||||||||||||||||| Sbjct: 119342 tcaccggctgcggcgcg 119358 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 183 tcacatgacgctgcacgagttggggttctcgtcgtcgaa 221 ||||||||||||||| | ||||||||||||||||||||| Sbjct: 119007 tcacatgacgctgcaggcgttggggttctcgtcgtcgaa 119045
>gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0094H06, from chromosome 3, complete sequence Length = 118075 Score = 101 bits (51), Expect = 3e-18 Identities = 81/91 (89%) Strand = Plus / Minus Query: 270 cgtcccgggcgggctgtagtagtcttggtagtaggactccggcgacgcgtgcgggtacgg 329 |||||| ||||||||||||||||| ||||||||| |||||||||| |||||||||||| Sbjct: 58643 cgtccccggcgggctgtagtagtcgcggtagtaggtgtccggcgacgagtgcgggtacgg 58584 Query: 330 catgtataggtatgatggcgaccattgctgc 360 |||||| ||||| || |||||||| |||||| Sbjct: 58583 catgtacaggtacgacggcgaccactgctgc 58553 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Minus Query: 449 gctccggctgcggcgcgtagtgggacacgctggctctcggctgcgccatgttgtagctca 508 |||||||| |||||||||||| ||| ||||| | ||||||||||||||| |||||||| Sbjct: 58443 gctccggccgcggcgcgtagtaggagacgctcgtcgtcggctgcgccatgtggtagctca 58384 Query: 509 tcaccggctgcggcgcg 525 ||||||||||||||||| Sbjct: 58383 tcaccggctgcggcgcg 58367 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 183 tcacatgacgctgcacgagttggggttctcgtcgtcgaa 221 ||||||||||||||| | ||||||||||||||||||||| Sbjct: 58718 tcacatgacgctgcaggcgttggggttctcgtcgtcgaa 58680
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 101 bits (51), Expect = 3e-18 Identities = 81/91 (89%) Strand = Plus / Plus Query: 270 cgtcccgggcgggctgtagtagtcttggtagtaggactccggcgacgcgtgcgggtacgg 329 |||||| ||||||||||||||||| ||||||||| |||||||||| |||||||||||| Sbjct: 12877629 cgtccccggcgggctgtagtagtcgcggtagtaggtgtccggcgacgagtgcgggtacgg 12877688 Query: 330 catgtataggtatgatggcgaccattgctgc 360 |||||| ||||| || |||||||| |||||| Sbjct: 12877689 catgtacaggtacgacggcgaccactgctgc 12877719 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Plus Query: 449 gctccggctgcggcgcgtagtgggacacgctggctctcggctgcgccatgttgtagctca 508 |||||||| |||||||||||| ||| ||||| | ||||||||||||||| |||||||| Sbjct: 12877829 gctccggccgcggcgcgtagtaggagacgctcgtcgtcggctgcgccatgtggtagctca 12877888 Query: 509 tcaccggctgcggcgcg 525 ||||||||||||||||| Sbjct: 12877889 tcaccggctgcggcgcg 12877905 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 183 tcacatgacgctgcacgagttggggttctcgtcgtcgaa 221 ||||||||||||||| | ||||||||||||||||||||| Sbjct: 12877554 tcacatgacgctgcaggcgttggggttctcgtcgtcgaa 12877592 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 185 acatgacgctgcacgagttggggttctcgtcg 216 |||||||| ||| |||||||||||||||||| Sbjct: 3028855 acatgacggcgcaggagttggggttctcgtcg 3028886
>dbj|AK066080.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051K22, full insert sequence Length = 1071 Score = 101 bits (51), Expect = 3e-18 Identities = 81/91 (89%) Strand = Plus / Minus Query: 270 cgtcccgggcgggctgtagtagtcttggtagtaggactccggcgacgcgtgcgggtacgg 329 |||||| ||||||||||||||||| ||||||||| |||||||||| |||||||||||| Sbjct: 684 cgtccccggcgggctgtagtagtcgcggtagtaggtgtccggcgacgagtgcgggtacgg 625 Query: 330 catgtataggtatgatggcgaccattgctgc 360 |||||| ||||| || |||||||| |||||| Sbjct: 624 catgtacaggtacgacggcgaccactgctgc 594 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Minus Query: 449 gctccggctgcggcgcgtagtgggacacgctggctctcggctgcgccatgttgtagctca 508 |||||||| |||||||||||| ||| ||||| | ||||||||||||||| |||||||| Sbjct: 484 gctccggccgcggcgcgtagtaggagacgctcgtcgtcggctgcgccatgtggtagctca 425 Query: 509 tcaccggctgcggcgcg 525 ||||||||||||||||| Sbjct: 424 tcaccggctgcggcgcg 408 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 183 tcacatgacgctgcacgagttggggttctcgtcgtcgaa 221 ||||||||||||||| | ||||||||||||||||||||| Sbjct: 759 tcacatgacgctgcaggcgttggggttctcgtcgtcgaa 721
>gb|AY108718.1| Zea mays PCO111663 mRNA sequence Length = 435 Score = 69.9 bits (35), Expect = 1e-08 Identities = 38/39 (97%) Strand = Plus / Minus Query: 183 tcacatgacgctgcacgagttggggttctcgtcgtcgaa 221 ||||||||||||||| ||||||||||||||||||||||| Sbjct: 251 tcacatgacgctgcaggagttggggttctcgtcgtcgaa 213 Score = 60.0 bits (30), Expect = 9e-06 Identities = 85/102 (83%), Gaps = 6/102 (5%) Strand = Plus / Minus Query: 263 acgcgttcgtcccgggcgggctgtagtagtc---ttggtagtaggactccggcgac---g 316 |||||| | |||||||||||| ||||||||| |||||||| | |||||||| | | Sbjct: 183 acgcgtgcatcccgggcgggccgtagtagtcctgctggtagtaaggctccggcgccgcgg 124 Query: 317 cgtgcgggtacggcatgtataggtatgatggcgaccattgct 358 ||||||||||||||||||| ||||| || |||||||| |||| Sbjct: 123 cgtgcgggtacggcatgtacaggtacgacggcgaccactgct 82
>ref|XM_479462.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1243 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 471 ggacacgctggctctcggctgcgccatgttgtagctcatcaccggctgcggcg 523 ||||||||| || ||||| ||||||| ||||||||||||||||||||||||| Sbjct: 781 ggacacgctcgcgctcgggtgcgccacattgtagctcatcaccggctgcggcg 729
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 471 ggacacgctggctctcggctgcgccatgttgtagctcatcaccggctgcggcg 523 ||||||||| || ||||| ||||||| ||||||||||||||||||||||||| Sbjct: 28330083 ggacacgctcgcgctcgggtgcgccacattgtagctcatcaccggctgcggcg 28330031
>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0470D12 Length = 157248 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 471 ggacacgctggctctcggctgcgccatgttgtagctcatcaccggctgcggcg 523 ||||||||| || ||||| ||||||| ||||||||||||||||||||||||| Sbjct: 55646 ggacacgctcgcgctcgggtgcgccacattgtagctcatcaccggctgcggcg 55594
>dbj|AK067933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128A09, full insert sequence Length = 1243 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 471 ggacacgctggctctcggctgcgccatgttgtagctcatcaccggctgcggcg 523 ||||||||| || ||||| ||||||| ||||||||||||||||||| ||||| Sbjct: 781 ggacacgctcgcgctcgggtgcgccacattgtagctcatcaccggcttcggcg 729
>ref|XM_475133.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1023 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Minus Query: 183 tcacatgacgctgcacgagttggggttctcgtcg 216 ||||||||||||||| ||||||| ||| |||||| Sbjct: 1023 tcacatgacgctgcaagagttggcgttgtcgtcg 990
>gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1393_A07, complete sequence Length = 159932 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Plus Query: 183 tcacatgacgctgcacgagttggggttctcgtcg 216 ||||||||||||||| ||||||| ||| |||||| Sbjct: 100076 tcacatgacgctgcaagagttggcgttgtcgtcg 100109
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Plus Query: 183 tcacatgacgctgcacgagttggggttctcgtcg 216 ||||||||||||||| ||||||| ||| |||||| Sbjct: 17570271 tcacatgacgctgcaagagttggcgttgtcgtcg 17570304
>dbj|AK058953.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-A11, full insert sequence Length = 1133 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Minus Query: 183 tcacatgacgctgcacgagttggggttctcgtcg 216 ||||||||||||||| ||||||| ||| |||||| Sbjct: 1087 tcacatgacgctgcaagagttggcgttgtcgtcg 1054
>emb|AL591423.6| Human DNA sequence from clone RP11-134P18 on chromosome 9 Contains a novel gene, the 5' end of a novel gene and a CpG island, complete sequence Length = 54193 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 136 ccagagaggtctctgttacga 156 ||||||||||||||||||||| Sbjct: 17702 ccagagaggtctctgttacga 17682
>gb|AC011701.22|AC011701 Homo sapiens 12 BAC RP11-937I21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 205510 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 ccagagaggtctctgttacga 156 ||||||||||||||||||||| Sbjct: 128114 ccagagaggtctctgttacga 128134
>ref|XM_470243.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 468 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 185 acatgacgctgcacgagttggggttctcgtcg 216 |||||||| ||| |||||||||||||||||| Sbjct: 466 acatgacggcgcaggagttggggttctcgtcg 435
>gb|AC002551.1|HUAC002551 Human Chromosome 16 BAC clone CIT987SK-A-951C11, complete sequence Length = 114411 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 385 gcctgctgcgccggtgagtgctgc 408 |||||||||||||||| ||||||| Sbjct: 71876 gcctgctgcgccggtgtgtgctgc 71899
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 506 tcatcaccggctgcggcgcg 525 |||||||||||||||||||| Sbjct: 3309933 tcatcaccggctgcggcgcg 3309914
>gb|AC011448.5| Homo sapiens chromosome 19 clone CTC-260F20, complete sequence Length = 165122 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 tccctccttggtcacatgac 191 |||||||||||||||||||| Sbjct: 51530 tccctccttggtcacatgac 51511
>gb|AC105730.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0011L14, complete sequence Length = 117974 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 185 acatgacgctgcacgagttggggttctcgtcg 216 |||||||| ||| |||||||||||||||||| Sbjct: 67517 acatgacggcgcaggagttggggttctcgtcg 67486
>gb|BC109639.1| Bos taurus transcription factor-like 1, mRNA (cDNA clone MGC:134217 IMAGE:8050148), complete cds Length = 1325 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 357 ctgcattggctgcgcgtgctggga 380 ||||||||||||| |||||||||| Sbjct: 753 ctgcattggctgcccgtgctggga 776
>gb|AY268590.1| Homo sapiens BCL2/adenovirus E1B 19kDa interacting protein 2 (BNIP2) gene, complete cds Length = 27985 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 ctctatttagaacagaaatagtag 27 |||| ||||||||||||||||||| Sbjct: 5139 ctctgtttagaacagaaatagtag 5116
>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0016I15, complete sequence Length = 166282 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 185 acatgacgctgcacgagttggggttctcgtcg 216 |||||||| ||| |||||||||||||||||| Sbjct: 166231 acatgacggcgcaggagttggggttctcgtcg 166262
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 tatttagaacagaaatagta 26 |||||||||||||||||||| Sbjct: 28403761 tatttagaacagaaatagta 28403780
>ref|NM_001015658.1| Bos taurus transcription factor-like 1 (TCFL1), mRNA Length = 1347 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 357 ctgcattggctgcgcgtgctggga 380 ||||||||||||| |||||||||| Sbjct: 788 ctgcattggctgcccgtgctggga 811
>gb|AC092755.4| Homo sapiens chromosome 15 clone RP11-361D15 map 15q22, complete sequence Length = 187429 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 4 ctctatttagaacagaaatagtag 27 |||| ||||||||||||||||||| Sbjct: 106504 ctctgtttagaacagaaatagtag 106527
>dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0519D04 Length = 193068 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 tatttagaacagaaatagta 26 |||||||||||||||||||| Sbjct: 118861 tatttagaacagaaatagta 118880
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 accggctgcggcgcgttgta 530 |||||||||||||||||||| Sbjct: 898633 accggctgcggcgcgttgta 898614
>dbj|AK105367.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-G06, full insert sequence Length = 822 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 185 acatgacgctgcacgagttggggttctcgtcg 216 |||||||| ||| |||||||||||||||||| Sbjct: 545 acatgacggcgcaggagttggggttctcgtcg 514
>gb|BT020964.1| Bos taurus transcription factor-like 1 (TCFL1), mRNA, complete cds Length = 1347 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 357 ctgcattggctgcgcgtgctggga 380 ||||||||||||| |||||||||| Sbjct: 788 ctgcattggctgcccgtgctggga 811
>emb|AL929315.8| Zebrafish DNA sequence from clone CH211-69K21, complete sequence Length = 174143 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 tatttagaacagaaatagta 26 |||||||||||||||||||| Sbjct: 173249 tatttagaacagaaatagta 173230 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 tatttagaacagaaatagta 26 |||||||||||||||||||| Sbjct: 171378 tatttagaacagaaatagta 171359 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,216,271 Number of Sequences: 3902068 Number of extensions: 3216271 Number of successful extensions: 63628 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63193 Number of HSP's gapped (non-prelim): 430 length of query: 634 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 611 effective length of database: 17,143,297,704 effective search space: 10474554897144 effective search space used: 10474554897144 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)