>RPOB_NEIG1 (Q5F5R5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1392

 Score = 33.1 bits (74), Expect = 0.93
 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
 Frame = -1

Query: 693  RRKAGDRAEKANYSYNNDGEKSHVPSLKNLPPIIHHDAFVSNAQNDYSHARLVPLEGCSA 514
            RRKAG+  E  N  YN  G+K  + SL +   I       SN +   S A  V  +G   
Sbjct: 1176 RRKAGELREFLNKLYNGSGKKEDLDSLTDEEII----ELASNLRKGASFASPV-FDGAKE 1230

Query: 513  SEASQLLSERWAAAMNMYNDP-------NDSPDKPVMYAGSGGSSW 397
            SE  ++L+  + +      DP       NDS  +  +Y G  G ++
Sbjct: 1231 SEIREMLNLAYPS-----EDPEVEKLGFNDSKTQITLYDGRSGEAF 1271

>PSBC_WHEAT (Q9XPS4) Photosystem II 44 kDa reaction center protein (P6 protein)|
           (CP43)
          Length = 473

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -1

Query: 549 HARLVPLEG--CSASEASQLLSERWAAAMNMYNDPNDSPDKPVMYAGSGGSSWGQGHMKL 376
           +ARL+ L G    A  A   L   WA AMN++   +  P+KP+         +GQG + L
Sbjct: 39  NARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPM---------YGQGLILL 89

Query: 375 PH 370
           PH
Sbjct: 90  PH 91

>RPOB_NEIMB (Q59622) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1392

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
 Frame = -1

Query: 693  RRKAGDRAEKANYSYNNDGEKSHVPSLKNLPPIIHHDAFVSNAQNDYSHARLVPLEGCSA 514
            +RKAG+  E  N  YN  G+K  + +L +   I       SN +   S A  V  +G   
Sbjct: 1176 QRKAGELREFLNRLYNGSGKKEDLDALTDEEII----ELASNLRKGASFASPV-FDGAKE 1230

Query: 513  SEASQLLSERWAAAMNMYNDP-------NDSPDKPVMYAGSGGSSW 397
            SE  ++L+  + +     +DP       NDS  +  +Y G  G ++
Sbjct: 1231 SEIREMLNLAYPS-----DDPEVEKLGFNDSKTQITLYDGRSGEAF 1271

>RPOB_NEIMA (P57009) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1392

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
 Frame = -1

Query: 693  RRKAGDRAEKANYSYNNDGEKSHVPSLKNLPPIIHHDAFVSNAQNDYSHARLVPLEGCSA 514
            +RKAG+  E  N  YN  G+K  + +L +   I       SN +   S A  V  +G   
Sbjct: 1176 QRKAGELREFLNRLYNGSGKKEDLDALTDEEII----ELASNLRKGASFASPV-FDGAKE 1230

Query: 513  SEASQLLSERWAAAMNMYNDP-------NDSPDKPVMYAGSGGSSW 397
            SE  ++L+  + +     +DP       NDS  +  +Y G  G ++
Sbjct: 1231 SEIREMLNLAYPS-----DDPEVEKLGFNDSKTQITLYDGRSGEAF 1271

>YMZ2_YEAST (Q03177) Hypothetical 94.3 kDa Trp-Asp repeats-containing protein|
           in SNZ1-YPK2 intergenic region
          Length = 834

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
 Frame = -1

Query: 705 RANNRRKAGDRAEKANYSYNNDGEKSHVPSLKNLPPIIHH--DAFVSNAQNDYSHARLVP 532
           R+ + R    ++   + S NN+ +  H   L NL P+ HH  D ++ N      HA   P
Sbjct: 525 RSGSLRSIFSKSMSRSSSQNNEEKPHHHLKLTNLLPLPHHSNDHYIKNTDYISFHAHNAP 584

Query: 531 LEGCSAS--EASQLLS 490
           +   S +  E S+ LS
Sbjct: 585 VTCVSIAPPETSKTLS 600

>CATA_NEIGO (Q59602) Catalase (EC 1.11.1.6)|
          Length = 500

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
 Frame = -1

Query: 738 IKRYTPPVHRNRANNRRKAGDRAEKANYSYNNDGEKSHVPSLKNLPPIIHHDAFVSNAQN 559
           + R   PVH N+ + + +A +  + A+Y  N+ G+ S  P     P  I+ DA   + + 
Sbjct: 356 VNRPRCPVHSNQRDGQGRATELRQPAHYEPNSFGQWSQQPDFAEPPLKINGDAAHWDYRQ 415

Query: 558 D----YSHARLVPLEGCSASEASQLLSERWAAAMNMYNDPNDSPD 436
           D    +S  R   L         Q L +  AAAM       D+PD
Sbjct: 416 DDDDYFSQPR--ALFNLMNDAQKQALFDNTAAAM------GDAPD 452

>CTR1_ARATH (Q05609) Serine/threonine-protein kinase CTR1 (EC 2.7.11.1)|
          Length = 821

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
 Frame = -1

Query: 711 RNRANNRRK---AGDRAEKANYSYNNDGEKSHVPSLKNLPPIIHHDAFVSNAQNDYSHAR 541
           R + + RR+   A D A+  NY +N +            PPI+H D    N   D  +  
Sbjct: 643 REQLDERRRLSMAYDVAKGMNYLHNRN------------PPIVHRDLKSPNLLVDKKYTV 690

Query: 540 LVPLEGCSASEASQLLSERWAAAMNMYNDPNDSPDKP 430
            V   G S  +AS  LS + AA    +  P    D+P
Sbjct: 691 KVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEP 727


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,938,452
Number of Sequences: 219361
Number of extensions: 2274752
Number of successful extensions: 6765
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6761
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7762912789
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)