Clone Name | rbasd17o16 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_475176.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1011 Score = 325 bits (164), Expect = 1e-85 Identities = 329/384 (85%) Strand = Plus / Minus Query: 193 gccgacgatgagcgagacgagcgcgtccttgaagtggccgtgcgcgctgccggcgacggc 252 |||| ||| |||||||| ||||||||| || ||| ||||||||| | ||||||||||| Sbjct: 1002 gccggcgacgagcgagaggagcgcgtctctgtagtagccgtgcgccttcccggcgacggc 943 Query: 253 gtcctcgagcttggccccgaactgctcctggtaggccgccctgatgccgtccatgtccac 312 |||||| ||| | | ||||||||||| ||||||||||| | |||| ||||||||||||| Sbjct: 942 gtcctccagcctcccgccgaactgctcgtggtaggccgcgcggatggcgtccatgtccac 883 Query: 313 gtccgaccgcgtcaccgccacccgcgacagggcctccttgccgtggtggtccgcgccctc 372 ||||| |||||||||||||||||||| ||| |||||||| |||||||||| ||||| || Sbjct: 882 gtccgcccgcgtcaccgccacccgcgtcagcgcctccttcgcgtggtggtcggcgccgtc 823 Query: 373 cctcagcgccgccgccatcacctggctgaagtacctctccggcgtcgccaggcactgcac 432 |||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||| || | Sbjct: 822 gctcaccgccgccgccaccacctcgctgaagtacctcgccggcgtcgccaggcacagcgc 763 Query: 433 ggcctccctcagagcctcctcgcttccgagatcctcctcgatgtgcttgccgtgcagctc 492 ||||||||||| | ||||||| || |||||||| |||||||| ||| || | || Sbjct: 762 cgcctccctcagtgtctcctcgtgcccaagatcctcttcgatgtggcggccatggatttc 703 Query: 493 cttgtagtacttgaaggtctggacgaggtgaggcttgctcctggtggtgaggatccttac 552 |||||||| ||||||||||| ||||||||| |||||||||| ||||||||||||||| || Sbjct: 702 cttgtagtgcttgaaggtctcgacgaggtgcggcttgctccgggtggtgaggatcctgac 643 Query: 553 cacctcgtcgttctccaccagctt 576 || |||||||||||||||||||| Sbjct: 642 gacgtcgtcgttctccaccagctt 619
>dbj|AK104639.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-E05, full insert sequence Length = 1254 Score = 325 bits (164), Expect = 1e-85 Identities = 329/384 (85%) Strand = Plus / Minus Query: 193 gccgacgatgagcgagacgagcgcgtccttgaagtggccgtgcgcgctgccggcgacggc 252 |||| ||| |||||||| ||||||||| || ||| ||||||||| | ||||||||||| Sbjct: 1058 gccggcgacgagcgagaggagcgcgtctctgtagtagccgtgcgccttcccggcgacggc 999 Query: 253 gtcctcgagcttggccccgaactgctcctggtaggccgccctgatgccgtccatgtccac 312 |||||| ||| | | ||||||||||| ||||||||||| | |||| ||||||||||||| Sbjct: 998 gtcctccagcctcccgccgaactgctcgtggtaggccgcgcggatggcgtccatgtccac 939 Query: 313 gtccgaccgcgtcaccgccacccgcgacagggcctccttgccgtggtggtccgcgccctc 372 ||||| |||||||||||||||||||| ||| |||||||| |||||||||| ||||| || Sbjct: 938 gtccgcccgcgtcaccgccacccgcgtcagcgcctccttcgcgtggtggtcggcgccgtc 879 Query: 373 cctcagcgccgccgccatcacctggctgaagtacctctccggcgtcgccaggcactgcac 432 |||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||| || | Sbjct: 878 gctcaccgccgccgccaccacctcgctgaagtacctcgccggcgtcgccaggcacagcgc 819 Query: 433 ggcctccctcagagcctcctcgcttccgagatcctcctcgatgtgcttgccgtgcagctc 492 ||||||||||| | ||||||| || |||||||| |||||||| ||| || | || Sbjct: 818 cgcctccctcagtgtctcctcgtgcccaagatcctcttcgatgtggcggccatggatttc 759 Query: 493 cttgtagtacttgaaggtctggacgaggtgaggcttgctcctggtggtgaggatccttac 552 |||||||| ||||||||||| ||||||||| |||||||||| ||||||||||||||| || Sbjct: 758 cttgtagtgcttgaaggtctcgacgaggtgcggcttgctccgggtggtgaggatcctgac 699 Query: 553 cacctcgtcgttctccaccagctt 576 || |||||||||||||||||||| Sbjct: 698 gacgtcgtcgttctccaccagctt 675
>dbj|AK098879.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F11, full insert sequence Length = 1254 Score = 325 bits (164), Expect = 1e-85 Identities = 329/384 (85%) Strand = Plus / Minus Query: 193 gccgacgatgagcgagacgagcgcgtccttgaagtggccgtgcgcgctgccggcgacggc 252 |||| ||| |||||||| ||||||||| || ||| ||||||||| | ||||||||||| Sbjct: 1059 gccggcgacgagcgagaggagcgcgtctctgtagtagccgtgcgccttcccggcgacggc 1000 Query: 253 gtcctcgagcttggccccgaactgctcctggtaggccgccctgatgccgtccatgtccac 312 |||||| ||| | | ||||||||||| ||||||||||| | |||| ||||||||||||| Sbjct: 999 gtcctccagcctcccgccgaactgctcgtggtaggccgcgcggatggcgtccatgtccac 940 Query: 313 gtccgaccgcgtcaccgccacccgcgacagggcctccttgccgtggtggtccgcgccctc 372 ||||| |||||||||||||||||||| ||| |||||||| |||||||||| ||||| || Sbjct: 939 gtccgcccgcgtcaccgccacccgcgtcagcgcctccttcgcgtggtggtcggcgccgtc 880 Query: 373 cctcagcgccgccgccatcacctggctgaagtacctctccggcgtcgccaggcactgcac 432 |||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||| || | Sbjct: 879 gctcaccgccgccgccaccacctcgctgaagtacctcgccggcgtcgccaggcacagcgc 820 Query: 433 ggcctccctcagagcctcctcgcttccgagatcctcctcgatgtgcttgccgtgcagctc 492 ||||||||||| | ||||||| || |||||||| |||||||| ||| || | || Sbjct: 819 cgcctccctcagtgtctcctcgtgcccaagatcctcttcgatgtggcggccatggatttc 760 Query: 493 cttgtagtacttgaaggtctggacgaggtgaggcttgctcctggtggtgaggatccttac 552 |||||||| ||||||||||| ||||||||| |||||||||| ||||||||||||||| || Sbjct: 759 cttgtagtgcttgaaggtctcgacgaggtgcggcttgctccgggtggtgaggatcctgac 700 Query: 553 cacctcgtcgttctccaccagctt 576 || |||||||||||||||||||| Sbjct: 699 gacgtcgtcgttctccaccagctt 676
>dbj|AK060054.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-B07, full insert sequence Length = 1284 Score = 325 bits (164), Expect = 1e-85 Identities = 329/384 (85%) Strand = Plus / Minus Query: 193 gccgacgatgagcgagacgagcgcgtccttgaagtggccgtgcgcgctgccggcgacggc 252 |||| ||| |||||||| ||||||||| || ||| ||||||||| | ||||||||||| Sbjct: 1058 gccggcgacgagcgagaggagcgcgtctctgtagtagccgtgcgccttcccggcgacggc 999 Query: 253 gtcctcgagcttggccccgaactgctcctggtaggccgccctgatgccgtccatgtccac 312 |||||| ||| | | ||||||||||| ||||||||||| | |||| ||||||||||||| Sbjct: 998 gtcctccagcctcccgccgaactgctcgtggtaggccgcgcggatggcgtccatgtccac 939 Query: 313 gtccgaccgcgtcaccgccacccgcgacagggcctccttgccgtggtggtccgcgccctc 372 ||||| |||||||||||||||||||| ||| |||||||| |||||||||| ||||| || Sbjct: 938 gtccgcccgcgtcaccgccacccgcgtcagcgcctccttcgcgtggtggtcggcgccgtc 879 Query: 373 cctcagcgccgccgccatcacctggctgaagtacctctccggcgtcgccaggcactgcac 432 |||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||| || | Sbjct: 878 gctcaccgccgccgccaccacctcgctgaagtacctcgccggcgtcgccaggcacagcgc 819 Query: 433 ggcctccctcagagcctcctcgcttccgagatcctcctcgatgtgcttgccgtgcagctc 492 ||||||||||| | ||||||| || |||||||| |||||||| ||| || | || Sbjct: 818 cgcctccctcagtgtctcctcgtgcccaagatcctcttcgatgtggcggccatggatttc 759 Query: 493 cttgtagtacttgaaggtctggacgaggtgaggcttgctcctggtggtgaggatccttac 552 |||||||| ||||||||||| ||||||||| |||||||||| ||||||||||||||| || Sbjct: 758 cttgtagtgcttgaaggtctcgacgaggtgcggcttgctccgggtggtgaggatcctgac 699 Query: 553 cacctcgtcgttctccaccagctt 576 || |||||||||||||||||||| Sbjct: 698 gacgtcgtcgttctccaccagctt 675
>gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088M05, complete sequence Length = 153368 Score = 234 bits (118), Expect = 3e-58 Identities = 226/262 (86%) Strand = Plus / Plus Query: 193 gccgacgatgagcgagacgagcgcgtccttgaagtggccgtgcgcgctgccggcgacggc 252 |||| ||| |||||||| ||||||||| || ||| ||||||||| | ||||||||||| Sbjct: 143519 gccggcgacgagcgagaggagcgcgtctctgtagtagccgtgcgccttcccggcgacggc 143578 Query: 253 gtcctcgagcttggccccgaactgctcctggtaggccgccctgatgccgtccatgtccac 312 |||||| ||| | | ||||||||||| ||||||||||| | |||| ||||||||||||| Sbjct: 143579 gtcctccagcctcccgccgaactgctcgtggtaggccgcgcggatggcgtccatgtccac 143638 Query: 313 gtccgaccgcgtcaccgccacccgcgacagggcctccttgccgtggtggtccgcgccctc 372 ||||| |||||||||||||||||||| ||| |||||||| |||||||||| ||||| || Sbjct: 143639 gtccgcccgcgtcaccgccacccgcgtcagcgcctccttcgcgtggtggtcggcgccgtc 143698 Query: 373 cctcagcgccgccgccatcacctggctgaagtacctctccggcgtcgccaggcactgcac 432 |||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||| || | Sbjct: 143699 gctcaccgccgccgccaccacctcgctgaagtacctcgccggcgtcgccaggcacagcgc 143758 Query: 433 ggcctccctcagagcctcctcg 454 ||||||||||| | ||||||| Sbjct: 143759 cgcctccctcagtgtctcctcg 143780 Score = 115 bits (58), Expect = 2e-22 Identities = 79/86 (91%) Strand = Plus / Plus Query: 491 tccttgtagtacttgaaggtctggacgaggtgaggcttgctcctggtggtgaggatcctt 550 |||||||||| ||||||||||| ||||||||| |||||||||| ||||||||||||||| Sbjct: 143885 tccttgtagtgcttgaaggtctcgacgaggtgcggcttgctccgggtggtgaggatcctg 143944 Query: 551 accacctcgtcgttctccaccagctt 576 || || |||||||||||||||||||| Sbjct: 143945 acgacgtcgtcgttctccaccagctt 143970
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 234 bits (118), Expect = 3e-58 Identities = 226/262 (86%) Strand = Plus / Plus Query: 193 gccgacgatgagcgagacgagcgcgtccttgaagtggccgtgcgcgctgccggcgacggc 252 |||| ||| |||||||| ||||||||| || ||| ||||||||| | ||||||||||| Sbjct: 18350307 gccggcgacgagcgagaggagcgcgtctctgtagtagccgtgcgccttcccggcgacggc 18350366 Query: 253 gtcctcgagcttggccccgaactgctcctggtaggccgccctgatgccgtccatgtccac 312 |||||| ||| | | ||||||||||| ||||||||||| | |||| ||||||||||||| Sbjct: 18350367 gtcctccagcctcccgccgaactgctcgtggtaggccgcgcggatggcgtccatgtccac 18350426 Query: 313 gtccgaccgcgtcaccgccacccgcgacagggcctccttgccgtggtggtccgcgccctc 372 ||||| |||||||||||||||||||| ||| |||||||| |||||||||| ||||| || Sbjct: 18350427 gtccgcccgcgtcaccgccacccgcgtcagcgcctccttcgcgtggtggtcggcgccgtc 18350486 Query: 373 cctcagcgccgccgccatcacctggctgaagtacctctccggcgtcgccaggcactgcac 432 |||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||| || | Sbjct: 18350487 gctcaccgccgccgccaccacctcgctgaagtacctcgccggcgtcgccaggcacagcgc 18350546 Query: 433 ggcctccctcagagcctcctcg 454 ||||||||||| | ||||||| Sbjct: 18350547 cgcctccctcagtgtctcctcg 18350568 Score = 115 bits (58), Expect = 2e-22 Identities = 79/86 (91%) Strand = Plus / Plus Query: 491 tccttgtagtacttgaaggtctggacgaggtgaggcttgctcctggtggtgaggatcctt 550 |||||||||| ||||||||||| ||||||||| |||||||||| ||||||||||||||| Sbjct: 18350673 tccttgtagtgcttgaaggtctcgacgaggtgcggcttgctccgggtggtgaggatcctg 18350732 Query: 551 accacctcgtcgttctccaccagctt 576 || || |||||||||||||||||||| Sbjct: 18350733 acgacgtcgtcgttctccaccagctt 18350758 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 gagaagacgaagacgaaccc 169 |||||||||||||||||||| Sbjct: 26915273 gagaagacgaagacgaaccc 26915254
>gb|AY107653.1| Zea mays PCO119349 mRNA sequence Length = 587 Score = 165 bits (83), Expect = 2e-37 Identities = 167/195 (85%) Strand = Plus / Plus Query: 212 agcgcgtccttgaagtggccgtgcgcgctgccggcgacggcgtcctcgagcttggccccg 271 ||||||||| || |||| |||||||| || | |||| | ||||||| |||||||||||| Sbjct: 267 agcgcgtccctgtagtgtccgtgcgccttggccgcgatgacgtcctccagcttggccccg 326 Query: 272 aactgctcctggtaggccgccctgatgccgtccatgtccacgtccgaccgcgtcaccgcc 331 ||||||| |||||||| || |||||| |||||||||| ||||||||||||||||||| Sbjct: 327 aactgctggtggtaggcggctctgatgtcgtccatgtcgtggtccgaccgcgtcaccgcc 386 Query: 332 acccgcgacagggcctccttgccgtggtggtccgcgccctccctcagcgccgccgccatc 391 |||| || |||||||||||| ||||||||||| |||| ||||||||||| || | ||| Sbjct: 387 accctcgtcagggcctccttcccgtggtggtcggcgctgtccctcagcgcgccctcaatc 446 Query: 392 acctggctgaagtac 406 ||||||||||||||| Sbjct: 447 acctggctgaagtac 461 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 464 tcctcctcgatgtgcttgccgtgcagctccttgtagtacttgaaggtctggacgag 519 |||||||||| |||| ||||||||| ||||||||||||| |||| ||||| ||||| Sbjct: 525 tcctcctcgacgtgcctgccgtgcatctccttgtagtacatgaacgtctgcacgag 580
>dbj|AK068231.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013147O19, full insert sequence Length = 472 Score = 159 bits (80), Expect = 1e-35 Identities = 155/180 (86%) Strand = Plus / Minus Query: 397 gctgaagtacctctccggcgtcgccaggcactgcacggcctccctcagagcctcctcgct 456 ||||||||||||| ||||||||||||||||| || | ||||||||||| | ||||||| Sbjct: 299 gctgaagtacctcgccggcgtcgccaggcacagcgccgcctccctcagtgtctcctcgtg 240 Query: 457 tccgagatcctcctcgatgtgcttgccgtgcagctccttgtagtacttgaaggtctggac 516 || |||||||| |||||||| ||| || | |||||||||| ||||||||||| ||| Sbjct: 239 cccaagatcctcttcgatgtggcggccatggatttccttgtagtgcttgaaggtctcgac 180 Query: 517 gaggtgaggcttgctcctggtggtgaggatccttaccacctcgtcgttctccaccagctt 576 |||||| |||||||||| ||||||||||||||| || || |||||||||||||||||||| Sbjct: 179 gaggtgcggcttgctccgggtggtgaggatcctgacgacgtcgtcgttctccaccagctt 120
>ref|XM_470642.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 543 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 567 ccaccagcttgccgccgtcggcgc 590 |||||||||||||||||||||||| Sbjct: 454 ccaccagcttgccgccgtcggcgc 431
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 567 ccaccagcttgccgccgtcggcgc 590 |||||||||||||||||||||||| Sbjct: 7244765 ccaccagcttgccgccgtcggcgc 7244742
>dbj|AB190187.1| Arthrobacter globiformis cmmA, cmmB genes for 6-alpha-maltosyltransferase, hypothetical protein, complete and partial cds Length = 4467 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 215 gcgtccttgaagtggccgtgcgcg 238 |||||||||||||||||||||||| Sbjct: 3512 gcgtccttgaagtggccgtgcgcg 3489
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 567 ccaccagcttgccgccgtcggcgc 590 |||||||||||||||||||||||| Sbjct: 7242660 ccaccagcttgccgccgtcggcgc 7242637
>gb|AC134229.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1081D05, complete sequence Length = 99133 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 567 ccaccagcttgccgccgtcggcgc 590 |||||||||||||||||||||||| Sbjct: 71518 ccaccagcttgccgccgtcggcgc 71495
>dbj|AK068960.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003N17, full insert sequence Length = 747 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 567 ccaccagcttgccgccgtcggcgc 590 |||||||||||||||||||||||| Sbjct: 369 ccaccagcttgccgccgtcggcgc 346
>dbj|AK058844.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-004-F11, full insert sequence Length = 1005 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 567 ccaccagcttgccgccgtcggcgc 590 |||||||||||||||||||||||| Sbjct: 568 ccaccagcttgccgccgtcggcgc 545
>ref|XM_418230.1| PREDICTED: Gallus gallus similar to hypothetical gene MGC19595 (LOC420112), mRNA Length = 2262 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 427 ctgcacggcctccctcagagcctcctc 453 ||||||||||||||||| ||||||||| Sbjct: 462 ctgcacggcctccctcacagcctcctc 436
>emb|CR354313.1| Gallus gallus finished cDNA, clone ChEST70d4 Length = 2304 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 427 ctgcacggcctccctcagagcctcctc 453 ||||||||||||||||| ||||||||| Sbjct: 462 ctgcacggcctccctcacagcctcctc 436
>emb|BX931681.1| Gallus gallus finished cDNA, clone ChEST545h18 Length = 873 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 427 ctgcacggcctccctcagagcctcctc 453 ||||||||||||||||| ||||||||| Sbjct: 208 ctgcacggcctccctcacagcctcctc 182
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 553 cacctcgtcgttctccaccagcttgc 578 |||||||||| ||||||||||||||| Sbjct: 3959221 cacctcgtcgctctccaccagcttgc 3959196
>emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome; segment 3/13 Length = 349564 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 568 caccagcttgccgccgtcggcgctct 593 |||||||| ||||||||||||||||| Sbjct: 202604 caccagctcgccgccgtcggcgctct 202579
>emb|BX248336.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 3/14 Length = 320050 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 568 caccagcttgccgccgtcggcgctct 593 |||||||| ||||||||||||||||| Sbjct: 222067 caccagctcgccgccgtcggcgctct 222042
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 315 ccgaccgcgtcaccgccacccgcgac 340 |||||||||||||| ||||||||||| Sbjct: 651605 ccgaccgcgtcacccccacccgcgac 651580
>gb|AF357159.1|AF357159 Mycobacterium tuberculosis isolate DS41 unknown sequence Length = 874 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 568 caccagcttgccgccgtcggcgctct 593 |||||||| ||||||||||||||||| Sbjct: 335 caccagctcgccgccgtcggcgctct 310
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 375 tcagcgccgccgccatcacctg 396 |||||||||||||||||||||| Sbjct: 1478414 tcagcgccgccgccatcacctg 1478435
>emb|AL162426.20| Human DNA sequence from clone RP11-56D16 on chromosome 9 Contains the STXBP1 gene for syntaxin binding protein 1 (UNC18,hUNC18,MUNC18-1), two novel genes, a novel gene (LOC138428), the gene for a novel protien (LOC286207), the gene for anovel protein (FLJ32780), the TOR2A gene for torsin family 2, member A (FLJ14771), the 3' end of the SH2D3C gene for SH2 domain containing 3C (CHAT,NSP3) and five CpG islands, complete sequence Length = 163338 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 513 ggacgaggtgaggcttgctcc 533 ||||||||||||||||||||| Sbjct: 143153 ggacgaggtgaggcttgctcc 143173
>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29 Length = 291000 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 315 ccgaccgcgtcaccgccaccc 335 ||||||||||||||||||||| Sbjct: 126036 ccgaccgcgtcaccgccaccc 126016
>dbj|AK076574.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4921518K07 product:unclassifiable, full insert sequence Length = 4711 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 89 atgaagcaggaaaaaagaaaa 109 ||||||||||||||||||||| Sbjct: 4656 atgaagcaggaaaaaagaaaa 4676
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 gacagggcctccttgccgtgg 358 ||||||||||||||||||||| Sbjct: 5905844 gacagggcctccttgccgtgg 5905824 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 gacgagaagacgaagacgaa 166 |||||||||||||||||||| Sbjct: 22959886 gacgagaagacgaagacgaa 22959867
>dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1136_A05 Length = 120823 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 gacagggcctccttgccgtgg 358 ||||||||||||||||||||| Sbjct: 48292 gacagggcctccttgccgtgg 48272
>dbj|AP003837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1559_F09 Length = 87792 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 gacagggcctccttgccgtgg 358 ||||||||||||||||||||| Sbjct: 80518 gacagggcctccttgccgtgg 80498
>gb|AC153592.3| Mus musculus 6 BAC RP23-20C15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 195726 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 89 atgaagcaggaaaaaagaaaa 109 ||||||||||||||||||||| Sbjct: 157931 atgaagcaggaaaaaagaaaa 157911
>dbj|AK074105.1| Homo sapiens mRNA for FLJ00176 protein Length = 5138 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 513 ggacgaggtgaggcttgctcc 533 ||||||||||||||||||||| Sbjct: 3456 ggacgaggtgaggcttgctcc 3476
>ref|XM_475829.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 633 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 gagaagacgaagacgaaccc 169 |||||||||||||||||||| Sbjct: 25 gagaagacgaagacgaaccc 6
>gb|AC102143.10| Mus musculus chromosome 7, clone RP23-292M1, complete sequence Length = 169980 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 85 ctagatgaagcaggaaaaaagaaa 108 ||||||||||||| |||||||||| Sbjct: 139438 ctagatgaagcagaaaaaaagaaa 139415
>ref|XM_604404.2| PREDICTED: Bos taurus similar to Surfeit locus protein 4 (LOC526045), mRNA Length = 3443 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 gaggcttgctcctggtggtg 541 |||||||||||||||||||| Sbjct: 995 gaggcttgctcctggtggtg 1014
>ref|XM_872943.1| PREDICTED: Bos taurus similar to surfeit 2, transcript variant 2 (LOC526046), mRNA Length = 3192 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 gaggcttgctcctggtggtg 541 |||||||||||||||||||| Sbjct: 3146 gaggcttgctcctggtggtg 3127
>gb|AC123071.3| Mus musculus BAC clone RP23-70P8 from chromosome 13, complete sequence Length = 252384 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 aagcaggaaaaaagaaaaca 111 |||||||||||||||||||| Sbjct: 96445 aagcaggaaaaaagaaaaca 96426
>ref|XM_322490.1| Neurospora crassa OR74A hypothetical protein (NCU00405.1) partial mRNA Length = 1992 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 cgacggcgtcctcgagcttg 265 |||||||||||||||||||| Sbjct: 472 cgacggcgtcctcgagcttg 453
>ref|XM_952198.1| Neurospora crassa OR74A hypothetical protein (NCU00405.1) partial mRNA Length = 1992 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 cgacggcgtcctcgagcttg 265 |||||||||||||||||||| Sbjct: 472 cgacggcgtcctcgagcttg 453
>gb|AC104278.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1345_B12, complete sequence Length = 119909 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 gagaagacgaagacgaaccc 169 |||||||||||||||||||| Sbjct: 67705 gagaagacgaagacgaaccc 67686
>gb|AC148477.3| Homo sapiens 12 BAC RP13-895J2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160802 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 ggcctccctcagagcctcct 452 |||||||||||||||||||| Sbjct: 122776 ggcctccctcagagcctcct 122757
>ref|XM_548390.2| PREDICTED: Canis familiaris similar to Surfeit locus protein 4 (LOC491269), mRNA Length = 1927 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 gaggcttgctcctggtggtg 541 |||||||||||||||||||| Sbjct: 752 gaggcttgctcctggtggtg 771
>gb|AC163625.5| Mus musculus BAC clone RP23-135K11 from chromosome 8, complete sequence Length = 228750 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 agcaggaaaaaagaaaacac 112 |||||||||||||||||||| Sbjct: 89700 agcaggaaaaaagaaaacac 89681
>emb|CR352207.9| Zebrafish DNA sequence from clone CH211-110B5 in linkage group 7, complete sequence Length = 180005 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 gacctcagtctgcaaatgtt 28 |||||||||||||||||||| Sbjct: 89566 gacctcagtctgcaaatgtt 89585
>gb|AF545435.1| Homo sapiens thymine-DNA glycosylase (TDG) gene, complete cds Length = 25621 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 aagcaggaaaaaagaaaaca 111 |||||||||||||||||||| Sbjct: 20788 aagcaggaaaaaagaaaaca 20807
>emb|X92429.1|SAPURCLUS S.alboniger napH, pur7, pur10, pur6, pur4, pur5 and pur3 genes Length = 9120 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 cgatgtgcttgccgtgcagc 490 |||||||||||||||||||| Sbjct: 3007 cgatgtgcttgccgtgcagc 2988
>ref|XM_777705.1| PREDICTED: Strongylocentrotus purpuratus similar to Akt-phosphorylation enhancer (LOC577479), mRNA Length = 5469 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 cctccctcagagcctcctcg 454 |||||||||||||||||||| Sbjct: 334 cctccctcagagcctcctcg 315
>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29 Length = 339650 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 cctcgatgtgcttgccgtgc 487 |||||||||||||||||||| Sbjct: 169285 cctcgatgtgcttgccgtgc 169266
>gb|AC158584.9| Mus musculus chromosome 7, clone RP24-157G13, complete sequence Length = 183369 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 cctccctcagcgccgccgcc 388 |||||||||||||||||||| Sbjct: 75442 cctccctcagcgccgccgcc 75461
>gb|AC118658.4| Homo sapiens chromosome 15, clone RP11-35O15, complete sequence Length = 168727 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 cctccctcagcgccgccgcc 388 |||||||||||||||||||| Sbjct: 151859 cctccctcagcgccgccgcc 151840
>emb|AL606522.6| Mouse DNA sequence from clone RP23-19L22 on chromosome 11 Contains the Actr2 gene for ARP2 actin-related protein 2 homolog (yeast), a small nuclear ribonucleoprotein polypeptide G (Snrpg) pseudogene, two novel genes, the Rab1 gene for RAB1, member RAS oncogene family and three CpG islands, complete sequence Length = 203071 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 aagcaggaaaaaagaaaaca 111 |||||||||||||||||||| Sbjct: 196883 aagcaggaaaaaagaaaaca 196902
>emb|BX001064.3| Mouse DNA sequence from clone RP23-65P18 on chromosome 4 Contains an immediate early response 3 (Ier3) pseudogene, complete sequence Length = 136981 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 ttgctcctggtggtgaggat 546 |||||||||||||||||||| Sbjct: 52226 ttgctcctggtggtgaggat 52207
>gb|AC101986.10| Mus musculus chromosome 7, clone RP24-353K18, complete sequence Length = 187803 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 cctccctcagcgccgccgcc 388 |||||||||||||||||||| Sbjct: 104431 cctccctcagcgccgccgcc 104450
>gb|AC118660.5| Homo sapiens chromosome 15, clone RP11-631H11, complete sequence Length = 167851 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 cctccctcagcgccgccgcc 388 |||||||||||||||||||| Sbjct: 108412 cctccctcagcgccgccgcc 108393
>ref|NM_135844.2| Drosophila melanogaster CG16886-RA (CG16886), mRNA Length = 2445 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 gatcctcctcgatgtgcttg 481 |||||||||||||||||||| Sbjct: 1205 gatcctcctcgatgtgcttg 1186
>gb|S78307.1| insulin-like growth factor I receptor {promoter} [rats, Genomic, 1358 nt] Length = 1358 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 cctccctcagcgccgccgcc 388 |||||||||||||||||||| Sbjct: 824 cctccctcagcgccgccgcc 805
>gb|M37807.1|RATIGFIRC Rat insulin-like growth factor I (IGFI) receptor gene, 5' end Length = 1358 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 cctccctcagcgccgccgcc 388 |||||||||||||||||||| Sbjct: 824 cctccctcagcgccgccgcc 805
>gb|AC092243.1|AC092243 Drosophila melanogaster, chromosome 2L, region 34D-34E, BAC clone BACR09N24, complete sequence Length = 158758 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 gatcctcctcgatgtgcttg 481 |||||||||||||||||||| Sbjct: 154509 gatcctcctcgatgtgcttg 154490
>gb|AC092223.1|AC092223 Drosophila melanogaster, chromosome 2L, region 34D-35X, BAC clone BACR16P12, complete sequence Length = 171598 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 462 gatcctcctcgatgtgcttg 481 |||||||||||||||||||| Sbjct: 119066 gatcctcctcgatgtgcttg 119085
>gb|AY394844.4| Pseudomonas sp. M18 pyoluteorin biosynthetic and ABC transporter gene cluster, partial sequence Length = 32800 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 252 cgtcctcgagcttggccccgaactgctc 279 |||||||||||||||||| || |||||| Sbjct: 16538 cgtcctcgagcttggcccggacctgctc 16511
>emb|BX931431.2| Gallus gallus finished cDNA, clone ChEST649i14 Length = 1397 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 ccctcagcgccgccgccatc 391 |||||||||||||||||||| Sbjct: 37 ccctcagcgccgccgccatc 18
>gb|AC114763.6| Homo sapiens BAC clone RP11-369K2 from 2, complete sequence Length = 87248 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 gatgaagcaggaaaaaagaaaaca 111 ||||||||||||||||| |||||| Sbjct: 21861 gatgaagcaggaaaaaacaaaaca 21838
>gb|AC078819.24| Homo sapiens 12q BAC RP11-490H24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172319 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 aagcaggaaaaaagaaaaca 111 |||||||||||||||||||| Sbjct: 61808 aagcaggaaaaaagaaaaca 61827
>ref|XM_343442.2| PREDICTED: Rattus norvegicus phosphoglucomutase 3 (predicted) (Pgm3_predicted), mRNA Length = 2711 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 aagcaggaaaaaagaaaaca 111 |||||||||||||||||||| Sbjct: 2467 aagcaggaaaaaagaaaaca 2486
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 cagcgccgccgccatcacct 395 |||||||||||||||||||| Sbjct: 4960782 cagcgccgccgccatcacct 4960801
>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1121_A05 Length = 172668 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 gacgagaagacgaagacgaa 166 |||||||||||||||||||| Sbjct: 35100 gacgagaagacgaagacgaa 35081
>dbj|BS000219.2| Pan troglodytes chromosome 22 clone:RP43-010L20, map 22, complete sequences Length = 62227 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 aagcaggaaaaaagaaaaca 111 |||||||||||||||||||| Sbjct: 42524 aagcaggaaaaaagaaaaca 42543
>emb|AL772218.29| Mouse DNA sequence from clone RP23-129K21 on chromosome 2, complete sequence Length = 218427 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ctcagtctgcaaatgttaca 31 |||||||||||||||||||| Sbjct: 182203 ctcagtctgcaaatgttaca 182184
>gb|BT021214.1| Drosophila melanogaster RH73259 full insert cDNA Length = 2448 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 gatcctcctcgatgtgcttg 481 |||||||||||||||||||| Sbjct: 1207 gatcctcctcgatgtgcttg 1188
>gb|AE003641.3| Drosophila melanogaster chromosome 2L, section 50 of 83 of the complete sequence Length = 304772 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 462 gatcctcctcgatgtgcttg 481 |||||||||||||||||||| Sbjct: 268438 gatcctcctcgatgtgcttg 268457
>dbj|AP002748.4| Homo sapiens genomic DNA, chromosome 11 clone:CTD-3074O7, complete sequence Length = 176017 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 gccaggcactgcacggcctc 438 |||||||||||||||||||| Sbjct: 60843 gccaggcactgcacggcctc 60824
>emb|Y10575.1|HSY10575 H.sapiens TDG gene, exon 6 & 7 Length = 1169 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 aagcaggaaaaaagaaaaca 111 |||||||||||||||||||| Sbjct: 583 aagcaggaaaaaagaaaaca 602
>dbj|AP001700.1| Homo sapiens genomic DNA, chromosome 21q, section 44/105 Length = 340000 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 aagcaggaaaaaagaaaaca 111 |||||||||||||||||||| Sbjct: 7985 aagcaggaaaaaagaaaaca 8004
>gb|AC151054.2| Mus musculus BAC clone RP23-147K16 from 13, complete sequence Length = 220038 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 aagcaggaaaaaagaaaaca 111 |||||||||||||||||||| Sbjct: 213737 aagcaggaaaaaagaaaaca 213756
>gb|M69229.1|HUMIGFR1PR Human insulin-like growth factor I receptor gene, promoter region and 5' end Length = 1651 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 cctccctcagcgccgccgcc 388 |||||||||||||||||||| Sbjct: 985 cctccctcagcgccgccgcc 966
>dbj|AP001607.1| Homo sapiens genomic DNA, chromosome 21, clone:KB851D4, APP-D21S292 region, complete sequence Length = 137676 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 aagcaggaaaaaagaaaaca 111 |||||||||||||||||||| Sbjct: 41305 aagcaggaaaaaagaaaaca 41324 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,275,889 Number of Sequences: 3902068 Number of extensions: 5275889 Number of successful extensions: 116329 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 114974 Number of HSP's gapped (non-prelim): 1350 length of query: 597 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 574 effective length of database: 17,143,297,704 effective search space: 9840252882096 effective search space used: 9840252882096 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)