ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17o12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MCR_TUPGB (Q29131) Mineralocorticoid receptor (MR) 28 5.2
2YCX7_CHLRE (P36495) 232.2 kDa protein (ORF1995) (ORF-S) (ORFA) 28 6.8
3AGP2_YEAST (P38090) General amino acid permease AGP2 27 8.9

>MCR_TUPGB (Q29131) Mineralocorticoid receptor (MR)|
          Length = 977

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
 Frame = +1

Query: 130 THTHTQKEL*VEKPAAPQISSLLFWVHPNPILYREHDMIEICWHFL*TSQADEGHSIGSV 309
           T+    KE  V     PQ+SS+   + P+P++  E+   EI +    +S+ D   ++ S 
Sbjct: 702 TYIAPAKEPSVNTALVPQLSSISRALTPSPVMVLENIEPEIVYAGYDSSKPDTAENLLST 761

Query: 310 LSL*WG--VTSIIKWP--APGTSKQP 375
           L+   G  +  ++KW    PG    P
Sbjct: 762 LNRLAGKQMIQVVKWAKVLPGFKNLP 787



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>YCX7_CHLRE (P36495) 232.2 kDa protein (ORF1995) (ORF-S) (ORFA)|
          Length = 1995

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
 Frame = -1

Query: 390 HPWSVRLFGGPWCR----PLDNACHPPLEGQNAPNAMPLISL*CLQKVPTDFYHVMFPV* 223
           H    RLF GPW R     L+N  +P LE      + P +     + +   FYH  F   
Sbjct: 431 HQIRFRLFPGPWMRSLKKQLNNPANPSLETSTKAASGPRVEF--FRILFEQFYHPNFHDR 488

Query: 222 YRIWMNPKKER 190
             +  NP + R
Sbjct: 489 AAMQTNPAEAR 499



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>AGP2_YEAST (P38090) General amino acid permease AGP2|
          Length = 596

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = -2

Query: 182 CGAAGFSTYSSFXXXXXXXXVLSCIFSRLSAITCWIINLCQGKPAGTYVVLCVV 21
           C   G   YS           L  + S  + +  W+INL        +VVLC+V
Sbjct: 424 CNRHGVPIYSVAISLVWALVSLLQLNSNSAVVLNWLINLITASQLINFVVLCIV 477


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,819,596
Number of Sequences: 219361
Number of extensions: 1297501
Number of successful extensions: 2349
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2349
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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