ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd17o11 |
|---|---|
| Clone Library Name | barley_pub |
>RPC5_HUMAN (Q9NVU0) DNA-directed RNA polymerases III 80 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase III subunit 5) (RPC5) Length = 708 Score = 36.2 bits (82), Expect = 0.069 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 2/128 (1%) Frame = -2 Query: 558 LASKRDQIMLEFTKMESIPVKYVERLIR--DERTRNMILNPLGKRREKLQDYKFIVAADS 385 L RD +M +FT+ + K V + + E ++ + + R K ++FI+ D Sbjct: 349 LCRGRDFVMWKFTQSRWVVRKEVATVTKLCAEDVKDFLEHMAVVRINK--GWEFILPYDG 406 Query: 384 SFIKRHPHIVKEQENAWSVRAATMPDPLETRSATEQRKTKNSARSNIPVKGPDPVMGKAK 205 FIK+HP +V+ Q W T + K N + +P K PD G A Sbjct: 407 EFIKKHPDVVQRQHMLW------------TGIQAKLEKVYNLVKETMP-KKPDAQSGPA- 452 Query: 204 DGLVQGSE 181 GLV G + Sbjct: 453 -GLVCGDQ 459
>YKA7_CAEEL (P34258) Hypothetical protein B0303.7| Length = 493 Score = 34.3 bits (77), Expect = 0.26 Identities = 23/92 (25%), Positives = 39/92 (42%) Frame = -2 Query: 402 IVAADSSFIKRHPHIVKEQENAWSVRAATMPDPLETRSATEQRKTKNSARSNIPVKGPDP 223 I AA + F+++ V + E A + DP + ++ R + V P P Sbjct: 56 IAAAKNPFVRQTAKNVAQDEKARGAVLNAVKDPSGGNKISAAFAVADANRKSDSVPPPPP 115 Query: 222 VMGKAKDGLVQGSENHLRSVLDSVFIANKVRS 127 G G + GS + +RS L+++ I V S Sbjct: 116 HRGGTSPGKLSGSHSAIRSQLENMHIGGSVMS 147
>RPC5_MOUSE (Q9CZT4) DNA-directed RNA polymerases III 80 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase III subunit 5) (RPC5) (Sex-lethal interactor homolog) Length = 710 Score = 33.9 bits (76), Expect = 0.34 Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 2/128 (1%) Frame = -2 Query: 558 LASKRDQIMLEFTKMESIPVKYVERLIR--DERTRNMILNPLGKRREKLQDYKFIVAADS 385 L RD +M +FT+ + K V + + E ++ + + R K ++F++ D Sbjct: 349 LCRGRDFVMWKFTQSRWVVRKEVAAVTKLCAEDVKDFLEHMAVVRINK--GWEFLLPYDL 406 Query: 384 SFIKRHPHIVKEQENAWSVRAATMPDPLETRSATEQRKTKNSARSNIPVKGPDPVMGKAK 205 FIK+HP +V+ Q WS A + K N + +P K P A Sbjct: 407 EFIKKHPDVVQRQHMLWSGIQAKL------------EKVYNLVKETMPKK---PDGQSAP 451 Query: 204 DGLVQGSE 181 GLV G + Sbjct: 452 VGLVSGEQ 459
>PGFRB_RAT (Q05030) Beta platelet-derived growth factor receptor precursor (EC| 2.7.10.1) (PDGF-R-beta) Length = 1097 Score = 32.7 bits (73), Expect = 0.76 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Frame = -2 Query: 390 DSSFIKR-HPHIVKEQENAWSVRAATMPDPLETRSATEQRKTKNSARSNIPVKGPDPVMG 214 D F++ HP I++ Q + + + PL+T S N ++ + PDP Sbjct: 973 DEEFLRSDHPAILRSQARLPGLHS--LRSPLDTSSVLYTAVQPNETDNDYIIPLPDPKPD 1030 Query: 213 KAKDGLVQGSENHLRSVLDSV 151 A +GL++GS + S L+ V Sbjct: 1031 AADEGLLEGSPSLASSTLNEV 1051
>PGFRB_MOUSE (P05622) Beta platelet-derived growth factor receptor precursor (EC| 2.7.10.1) (PDGF-R-beta) Length = 1098 Score = 32.0 bits (71), Expect = 1.3 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Frame = -2 Query: 390 DSSFIKR-HPHIVKEQENAWSVRAATMPDPLETRSATEQRKTKNSARSNIPVKGPDPVMG 214 D F++ HP I++ Q + + + PL+T S N + ++ + PDP Sbjct: 973 DEEFLRSDHPAILRSQARFPGIHS--LRSPLDTSSVLYTAVQPNESDNDYIIPLPDPKPD 1030 Query: 213 KAKDGLVQGSENHLRSVLDSV 151 A +GL +GS + S L+ V Sbjct: 1031 VADEGLPEGSPSLASSTLNEV 1051
>AMZ1_MOUSE (Q8BVF9) Archaemetzincin-1 (EC 3.-.-.-) (Archeobacterial| metalloproteinase-like protein 1) Length = 502 Score = 31.2 bits (69), Expect = 2.2 Identities = 21/74 (28%), Positives = 38/74 (51%) Frame = -2 Query: 336 WSVRAATMPDPLETRSATEQRKTKNSARSNIPVKGPDPVMGKAKDGLVQGSENHLRSVLD 157 W + P+ ET A+ Q + ++ AR +I ++ D G A L+ +HLRS + Sbjct: 66 WLLSRPEAPEDFETFHASLQLRKQSLARKHIYLQPIDLSEGLAGCPLL----DHLRSCAE 121 Query: 156 SVFIANKVRSFPAV 115 + F+ +V+ P+V Sbjct: 122 AFFLGLRVKCLPSV 135
>AMZ1_RAT (Q400C9) Archaemetzincin-1 (EC 3.-.-.-) (Archeobacterial| metalloproteinase-like protein 1) Length = 501 Score = 31.2 bits (69), Expect = 2.2 Identities = 21/74 (28%), Positives = 38/74 (51%) Frame = -2 Query: 336 WSVRAATMPDPLETRSATEQRKTKNSARSNIPVKGPDPVMGKAKDGLVQGSENHLRSVLD 157 W + P+ ET A+ Q + ++ AR +I ++ D G A L+ +HLRS + Sbjct: 66 WLLSRPEAPEDFETFHASLQLRKQSLARKHIYLQPIDLSEGLAGCPLL----DHLRSCAE 121 Query: 156 SVFIANKVRSFPAV 115 + F+ +V+ P+V Sbjct: 122 AFFLGLRVKCLPSV 135
>SM1L2_HUMAN (Q8NDV3) Structural maintenance of chromosome 1-like 2 protein| (SMC1beta protein) Length = 1235 Score = 30.8 bits (68), Expect = 2.9 Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 2/165 (1%) Frame = -2 Query: 489 ERLIRDERTRNMILNPLGKRREKLQDYKFIVAADSSFIKRHPHIVKEQENAWSVRAATMP 310 ERL ++R + L + +E+++D+K + + K +KE++ + T+ Sbjct: 405 ERLAFEKRRHGEVQGNLKQIKEQIEDHKKRIEKLEEYTKTCMDCLKEKKQ----QEETLV 460 Query: 309 DPLE-TRS-ATEQRKTKNSARSNIPVKGPDPVMGKAKDGLVQGSENHLRSVLDSVFIANK 136 D +E T+S +E + N RS + G D GK + + E+ R DSVF + Sbjct: 461 DEIEKTKSRMSEFNEELNLIRSELQNAGIDTHEGKRQQKRAEVLEHLKRLYPDSVF--GR 518 Query: 135 VRSFPAVVRDLRHLAVKYASDRKDGARFQALSNAAQTCVSLSRKE 1 + + LAV R A A A+ C+ ++E Sbjct: 519 LFDLCHPIHKKYQLAVTKVFGRFITAIVVASEKVAKDCIRFLKEE 563
>RLP24_BRARE (Q7ZTZ2) Probable ribosome biogenesis protein RLP24| Length = 161 Score = 30.4 bits (67), Expect = 3.8 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 15/75 (20%) Frame = -2 Query: 531 LEFTKMESIPVKYVERL-------------IRDERTRNMILNPL--GKRREKLQDYKFIV 397 LEF K + PVKY L I+ +R I+N L GK EK Sbjct: 69 LEFEKRRNTPVKYNRELWSKTVEAMRKVESIKHKRQARFIMNRLKKGKELEK-------- 120 Query: 396 AADSSFIKRHPHIVK 352 AAD S +K++ H++K Sbjct: 121 AADISEVKKNIHLIK 135
>TLL_DROME (P18102) Protein tailless| Length = 452 Score = 29.6 bits (65), Expect = 6.4 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = +1 Query: 415 LKLLPSFTQRIQYHVPCPLISDQSFYILHRYGFHFC 522 ++L P+ + RI YHVPC + D S YG + C Sbjct: 18 VRLSPAASSRILYHVPCKVCRDHSSG--KHYGIYAC 51
>TLL_DROVI (O16845) Protein tailless| Length = 450 Score = 29.6 bits (65), Expect = 6.4 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = +1 Query: 415 LKLLPSFTQRIQYHVPCPLISDQSFYILHRYGFHFC 522 ++L P+ + RI YHVPC + D S YG + C Sbjct: 18 VRLSPAASSRILYHVPCKVCRDHSSG--KHYGIYAC 51
>RNE_BUCAP (Q8K9J9) Ribonuclease E (EC 3.1.4.-) (RNase E)| Length = 968 Score = 29.6 bits (65), Expect = 6.4 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 2/97 (2%) Frame = -2 Query: 489 ERLIRDERTRNMILNPLGKRREKLQDYKFIVAADSSFIKRHPHIVKE--QENAWSVRAAT 316 E+ +R + N I+N L + +KFIV +SF+K+H + E + N + + Sbjct: 547 EKFLRKKNYNNSIINALFNNKNLF--FKFIVWIKNSFLKKHIFVKNESFKRNIFQNKKNI 604 Query: 315 MPDPLETRSATEQRKTKNSARSNIPVKGPDPVMGKAK 205 + E ++ E+ K++ S+I ++ K K Sbjct: 605 LFAKKEEFNSIEEIHKKDNQVSSIDNNKKKQLLNKVK 641 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,921,299 Number of Sequences: 219361 Number of extensions: 1767386 Number of successful extensions: 4702 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4587 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4701 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
