ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17o11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
2dbj|AP004650.2| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
3dbj|AK100341.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
4gb|AC158622.4| Mus musculus 10 BAC RP23-292G1 (Roswell Park Canc... 42 2.0
5emb|AL603925.20| Mouse DNA sequence from clone RP23-175K24 on ch... 42 2.0
6gb|AC105430.2| Homo sapiens chromosome 16 clone RP11-2C15, compl... 42 2.0
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.8
8gb|AF016677.1| Caenorhabditis elegans cosmid ZK1240, complete se... 40 7.8
9gb|AC084022.10| Oryza sativa chromosome 3 BAC OSJNBa0011H24 geno... 40 7.8
10gb|AC129778.5| Homo sapiens BAC clone RP11-1221G12 from UL, comp... 40 7.8
11emb|Z48045.1|CEC41C4 Caenorhabditis elegans Cosmid C41C4, comple... 40 7.8
12gb|AC012526.35| Mus musculus strain 129S6/SvEvTac clone rp21-671... 40 7.8
13gb|AC012399.40| Mus musculus strain 129S6/SvEvTac clone rp21-184... 40 7.8
14emb|CR388047.20| Zebrafish DNA sequence from clone DKEY-244D13, ... 40 7.8
15emb|BX255923.13| Human DNA sequence from clone RP11-115J7 on chr... 40 7.8
16emb|BX284632.11| Human DNA sequence from clone RP11-460E7 on chr... 40 7.8
17emb|AL732509.4| Human DNA sequence from clone CTD-2245E12 on chr... 40 7.8
18emb|AL512605.13| Human DNA sequence from clone RP11-15J10 on chr... 40 7.8
19emb|AL512663.4| Human DNA sequence from clone RP11-356H7 on chro... 40 7.8
20emb|AL356244.12| Human DNA sequence from clone RP11-174M15 on ch... 40 7.8
21emb|AL353608.20| Human DNA sequence from clone RP11-561O23 on ch... 40 7.8
22gb|AC080008.23| Homo sapiens 3 BAC RP11-615P1 (Roswell Park Canc... 40 7.8
23emb|BX914203.24| Zebrafish DNA sequence from clone CH211-22E19 i... 40 7.8
24gb|AC093418.2| Homo sapiens chromosome 3 clone RP11-1035L22, com... 40 7.8
25gb|AC003060.1| Mus musculus Chromosome 16 BAC Clone 72k21 Synten... 40 7.8
26gb|AC091733.3| Genomic sequence for Oryza sativa, Nipponbare str... 40 7.8
27gb|AF435952.1|AF435952 Caenorhabditis elegans Ser/Thr protein ki... 40 7.8
28gb|AC093413.2| Homo sapiens chromosome 3 clone RP11-170K19, comp... 40 7.8
29gb|AC084822.36| Mus musculus strain C57BL/6J clone rp23-47o21 ma... 40 7.8
30dbj|AK035477.1| Mus musculus adult male urinary bladder cDNA, RI... 40 7.8
31ref|NM_063300.3| Caenorhabditis elegans IRE1 kinase related fami... 40 7.8
32dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
33emb|BX004816.11| Zebrafish DNA sequence from clone DKEY-30G5 in ... 40 7.8
34dbj|BA000027.2| Oryzias latipes DNA, MHC Class I Region 40 7.8
35gb|AC016745.6| Homo sapiens BAC clone RP11-480C16 from 2, comple... 40 7.8
36gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, ... 40 7.8
37dbj|AK174630.1| Ciona intestinalis cDNA, clone:cigd049l15, full ... 40 7.8
38emb|AL163540.11| Human DNA sequence from clone RP11-348N17 on ch... 40 7.8
39emb|BX005442.10| Zebrafish DNA sequence from clone DKEY-88J15, c... 40 7.8
40emb|AL731809.17| Human DNA sequence from clone RP13-354N4 on chr... 40 7.8
41emb|BX901950.7| Zebrafish DNA sequence from clone DKEY-111C4 in ... 40 7.8
42gb|AC145363.4| Dasypus novemcinctus clone VMRC5-356N21, complete... 40 7.8
43emb|AL772360.4| Human DNA sequence from clone RP11-35J7 on chrom... 40 7.8
44emb|AL591968.4| Human DNA sequence from clone RP13-39F9 on chrom... 40 7.8
45gb|M20131.1|RATCYP45I Rat cytochrome P450IIE1 gene, complete cds 40 7.8
46emb|AL672144.8| Mouse DNA sequence from clone RP23-40H13 on chro... 40 7.8

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 70/82 (85%)
 Strand = Plus / Minus

                                                                            
Query: 31       tgcagcatttgacagagcttggaaccttgctccatctttcctgtcagaggcatattttac 90
                |||||| |||||||||||||| |   ||| |||||| || |||||||| ||||||||  |
Sbjct: 10260040 tgcagcgtttgacagagcttgcagttttggtccatcctttctgtcagaagcatatttagc 10259981

                                      
Query: 91       tgccaagtgcctcaagtctcta 112
                |||||| |||||||||||||||
Sbjct: 10259980 tgccaactgcctcaagtctcta 10259959



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 201/257 (78%)
 Strand = Plus / Minus

                                                                            
Query: 134      actttattggcaatgaagacactatccaagacagagcgcaaatggttttcacttccttga 193
                ||||| |||||| |||| | | ||||||| |||||| |||   |||||||| ||||||| 
Sbjct: 10259062 actttgttggcagtgaaaatagtatccaaaacagagtgcacgaggttttcatttccttgc 10259003

                                                                            
Query: 194      acgaggccatccttggccttacccatgactggatcaggccctttcacaggaatgttagat 253
                ||  | |||||| |||||||   |||   |||||||||||||||   |||||||||||| 
Sbjct: 10259002 actggaccatccctggccttgttcatatttggatcaggcccttttgaaggaatgttagac 10258943

                                                                            
Query: 254      ctggctgaattcttggttttcctctgttcagtagcgctgcgtgtctctaggggatcaggc 313
                 ||| ||  ||||||||||||||    ||||||  ||||  ||||||| | |  ||| ||
Sbjct: 10258942 ttggttgtgttcttggttttccttgcctcagtattgctggatgtctcttgagattcacgc 10258883

                                                                            
Query: 314      atggttgccgcgcgaactgaccaagcattttcttgctccttgactatatgggggtgacgt 373
                || |||| | | || || ||||||||||  ||||||||||||||||||||||| |  |||
Sbjct: 10258882 atagttgtctcacgtacagaccaagcatgatcttgctccttgactatatggggatagcgt 10258823

                                 
Query: 374      tttatgaaggatgaatc 390
                 |||||||||| |||||
Sbjct: 10258822 cttatgaaggaagaatc 10258806



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>dbj|AP004650.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1540_G08
          Length = 126263

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 70/82 (85%)
 Strand = Plus / Minus

                                                                         
Query: 31    tgcagcatttgacagagcttggaaccttgctccatctttcctgtcagaggcatattttac 90
             |||||| |||||||||||||| |   ||| |||||| || |||||||| ||||||||  |
Sbjct: 66063 tgcagcgtttgacagagcttgcagttttggtccatcctttctgtcagaagcatatttagc 66004

                                   
Query: 91    tgccaagtgcctcaagtctcta 112
             |||||| |||||||||||||||
Sbjct: 66003 tgccaactgcctcaagtctcta 65982



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 201/257 (78%)
 Strand = Plus / Minus

                                                                         
Query: 134   actttattggcaatgaagacactatccaagacagagcgcaaatggttttcacttccttga 193
             ||||| |||||| |||| | | ||||||| |||||| |||   |||||||| ||||||| 
Sbjct: 65085 actttgttggcagtgaaaatagtatccaaaacagagtgcacgaggttttcatttccttgc 65026

                                                                         
Query: 194   acgaggccatccttggccttacccatgactggatcaggccctttcacaggaatgttagat 253
             ||  | |||||| |||||||   |||   |||||||||||||||   |||||||||||| 
Sbjct: 65025 actggaccatccctggccttgttcatatttggatcaggcccttttgaaggaatgttagac 64966

                                                                         
Query: 254   ctggctgaattcttggttttcctctgttcagtagcgctgcgtgtctctaggggatcaggc 313
              ||| ||  ||||||||||||||    ||||||  ||||  ||||||| | |  ||| ||
Sbjct: 64965 ttggttgtgttcttggttttccttgcctcagtattgctggatgtctcttgagattcacgc 64906

                                                                         
Query: 314   atggttgccgcgcgaactgaccaagcattttcttgctccttgactatatgggggtgacgt 373
             || |||| | | || || ||||||||||  ||||||||||||||||||||||| |  |||
Sbjct: 64905 atagttgtctcacgtacagaccaagcatgatcttgctccttgactatatggggatagcgt 64846

                              
Query: 374   tttatgaaggatgaatc 390
              |||||||||| |||||
Sbjct: 64845 cttatgaaggaagaatc 64829



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>dbj|AK100341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023082B07, full
           insert sequence
          Length = 3376

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 70/82 (85%)
 Strand = Plus / Minus

                                                                       
Query: 31  tgcagcatttgacagagcttggaaccttgctccatctttcctgtcagaggcatattttac 90
           |||||| |||||||||||||| |   ||| |||||| || |||||||| ||||||||  |
Sbjct: 952 tgcagcgtttgacagagcttgcagttttggtccatcctttctgtcagaagcatatttagc 893

                                 
Query: 91  tgccaagtgcctcaagtctcta 112
           |||||| |||||||||||||||
Sbjct: 892 tgccaactgcctcaagtctcta 871



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>gb|AC158622.4| Mus musculus 10 BAC RP23-292G1 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 232339

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 67    tttcctgtcagaggcatattttact 91
             |||||||||||||||||||| ||||
Sbjct: 78074 tttcctgtcagaggcatattgtact 78098



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>emb|AL603925.20| Mouse DNA sequence from clone RP23-175K24 on chromosome 11 Contains
            the gene for nuclear DNA binding protein C1d and a
            aldo-keto reductase family 1 member B3 (aldose reductase)
            (Akr1b3) pseudogene, complete sequence
          Length = 232869

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 515  atttttgtaaactcaagcata 535
            |||||||||||||||||||||
Sbjct: 8119 atttttgtaaactcaagcata 8099



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>gb|AC105430.2| Homo sapiens chromosome 16 clone RP11-2C15, complete sequence
          Length = 105731

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 415   ttgaagcttctcccttctttt 435
             |||||||||||||||||||||
Sbjct: 99063 ttgaagcttctcccttctttt 99043



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 394      tgctactataaacttgtagtcttg 417
                |||||||||| |||||||||||||
Sbjct: 15026000 tgctactatagacttgtagtcttg 15026023



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>gb|AF016677.1| Caenorhabditis elegans cosmid ZK1240, complete sequence
          Length = 17030

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 170  cgcaaatggttttcacttcc 189
            ||||||||||||||||||||
Sbjct: 5757 cgcaaatggttttcacttcc 5738



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>gb|AC084022.10| Oryza sativa chromosome 3 BAC OSJNBa0011H24 genomic sequence, complete
             sequence
          Length = 137184

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 394   tgctactataaacttgtagtcttg 417
             |||||||||| |||||||||||||
Sbjct: 16762 tgctactatagacttgtagtcttg 16739



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>gb|AC129778.5| Homo sapiens BAC clone RP11-1221G12 from UL, complete sequence
          Length = 236177

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 266    ttggttttcctctgttcagt 285
              ||||||||||||||||||||
Sbjct: 213923 ttggttttcctctgttcagt 213942



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>emb|Z48045.1|CEC41C4 Caenorhabditis elegans Cosmid C41C4, complete sequence
          Length = 39750

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     ttacgagaaagtgatacaca 24
             ||||||||||||||||||||
Sbjct: 14564 ttacgagaaagtgatacaca 14545



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>gb|AC012526.35| Mus musculus strain 129S6/SvEvTac clone rp21-671i11 map 16, complete
              sequence
          Length = 186272

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    actggatcaggccctttcac 240
              ||||||||||||||||||||
Sbjct: 142658 actggatcaggccctttcac 142677



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>gb|AC012399.40| Mus musculus strain 129S6/SvEvTac clone rp21-184c17 map 16, complete
              sequence
          Length = 146040

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 221    actggatcaggccctttcac 240
              ||||||||||||||||||||
Sbjct: 118678 actggatcaggccctttcac 118659



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>emb|CR388047.20| Zebrafish DNA sequence from clone DKEY-244D13, complete sequence
          Length = 223119

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 516   tttttgtaaactcaagcataattt 539
             ||||||||||||||| ||||||||
Sbjct: 84175 tttttgtaaactcaatcataattt 84152



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>emb|BX255923.13| Human DNA sequence from clone RP11-115J7 on chromosome 9 Contains the
             5' end of a pseudogene similar to part of
             phosphoglucomutase 5 (PGRM) (PGM5), a novel gene, the gene
             for a novel forkhead box D4 (FOXD4) protein, the gene for
             a novel protein similar to COBW domain containing 1
             (CBWD1) and four CpG islands, complete sequence
          Length = 179342

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   ttggttttcctctgttcagt 285
             ||||||||||||||||||||
Sbjct: 45098 ttggttttcctctgttcagt 45079



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>emb|BX284632.11| Human DNA sequence from clone RP11-460E7 on chromosome 9 Contains a gene
              similar to COBW-like protein (LOC55871), the FOXD4L4 gene
              for forkhead box D4 like 4, an immunoglobulin kappa
              variable 1-5 (IGKV1-5) pseudogene, three novel pseudogenes,
              a pseudogene similar to part of tripartite motif-containing
              protein family, a pseudogene similar to part of BMS1-like,
              ribosome assembly protein (yeast) (BMS1L) and three CpG
              islands, complete sequence
          Length = 187806

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 266    ttggttttcctctgttcagt 285
              ||||||||||||||||||||
Sbjct: 142026 ttggttttcctctgttcagt 142045



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>emb|AL732509.4| Human DNA sequence from clone CTD-2245E12 on chromosome X Contains the
             5' end of the PHKA2 gene for phosphorylase kinase, alpha 2
             (liver), the 3' end of the GPR64 gene for G
             protein-coupled receptor 64 and a CpG island, complete
             sequence
          Length = 128189

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    gcatttgacagagcttggaa 54
             ||||||||||||||||||||
Sbjct: 85838 gcatttgacagagcttggaa 85819



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>emb|AL512605.13| Human DNA sequence from clone RP11-15J10 on chromosome 9 Contains a
              pseudogene similar to part of COBW doamin family protein,
              the FOXD4L2 gene for forkhead box D4 like 2, an
              immunoglobulin kappa variable 1-5 (IGKV1-5) pseudogene,
              three novel pseudogenes, a pseudogene similar to part of
              cytochrome P450 family protein, a pseudogene similar to
              part of BMS1-like, ribosome assembly protein (yeast)
              (BMS1L) and four CpG islands, complete sequence
          Length = 158187

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 266    ttggttttcctctgttcagt 285
              ||||||||||||||||||||
Sbjct: 149306 ttggttttcctctgttcagt 149325



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>emb|AL512663.4| Human DNA sequence from clone RP11-356H7 on chromosome 1, complete
             sequence
          Length = 75171

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 363   gggggtgacgttttatgaaggatg 386
             ||||||| ||||||||||||||||
Sbjct: 24955 gggggtgccgttttatgaaggatg 24932



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>emb|AL356244.12| Human DNA sequence from clone RP11-174M15 on chromosome 9 Contains the
             5' end of the gene for COBW-like protein (LOC55871), 2
             novel genes, the 5' end of a novel gene (contains FLJ36253
             and FLJ00026) and a CpG island, complete sequence
          Length = 175153

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   ttggttttcctctgttcagt 285
             ||||||||||||||||||||
Sbjct: 21869 ttggttttcctctgttcagt 21888



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>emb|AL353608.20| Human DNA sequence from clone RP11-561O23 on chromosome 9 Contains four
             novel genes, the  CBWD3 gene for COBW domain containing 3,
             the FOXD4L3 gene for forkhead box D4 like 3, the 5' end of
             the PGM5 gene for phosphoglucomutase 5, and four CpG
             islands, complete sequence
          Length = 172991

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   ttggttttcctctgttcagt 285
             ||||||||||||||||||||
Sbjct: 50711 ttggttttcctctgttcagt 50692



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>gb|AC080008.23| Homo sapiens 3 BAC RP11-615P1 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 197883

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 261    aattcttggttttcctctgttcag 284
              |||| |||||||||||||||||||
Sbjct: 168382 aatttttggttttcctctgttcag 168359



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>emb|BX914203.24| Zebrafish DNA sequence from clone CH211-22E19 in linkage group 11,
             complete sequence
          Length = 179563

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 502   aggtatggattccatttttg 521
             ||||||||||||||||||||
Sbjct: 94336 aggtatggattccatttttg 94355



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>gb|AC093418.2| Homo sapiens chromosome 3 clone RP11-1035L22, complete sequence
          Length = 206320

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   aatggttttcacttccttga 193
             ||||||||||||||||||||
Sbjct: 93759 aatggttttcacttccttga 93778



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>gb|AC003060.1| Mus musculus Chromosome 16 BAC Clone 72k21 Syntenic To Homo sapiens
              22q11.2 DGCR Region, complete sequence
          Length = 118235

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    actggatcaggccctttcac 240
              ||||||||||||||||||||
Sbjct: 100374 actggatcaggccctttcac 100393



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>gb|AC091733.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0048F08, from chromosome 3, complete sequence
          Length = 155790

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 394    tgctactataaacttgtagtcttg 417
              |||||||||| |||||||||||||
Sbjct: 128773 tgctactatagacttgtagtcttg 128750



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>gb|AF435952.1|AF435952 Caenorhabditis elegans Ser/Thr protein kinase (ire1) mRNA, complete
            cds
          Length = 3344

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 5    ttacgagaaagtgatacaca 24
            ||||||||||||||||||||
Sbjct: 1699 ttacgagaaagtgatacaca 1718



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>gb|AC093413.2| Homo sapiens chromosome 3 clone RP11-170K19, complete sequence
          Length = 175699

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   aatggttttcacttccttga 193
             ||||||||||||||||||||
Sbjct: 59453 aatggttttcacttccttga 59434



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>gb|AC084822.36| Mus musculus strain C57BL/6J clone rp23-47o21 map 16, complete sequence
          Length = 195335

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    actggatcaggccctttcac 240
              ||||||||||||||||||||
Sbjct: 133549 actggatcaggccctttcac 133568



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>dbj|AK035477.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
           enriched library, clone:9530053J19
           product:unclassifiable, full insert sequence
          Length = 2029

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 221 actggatcaggccctttcac 240
           ||||||||||||||||||||
Sbjct: 612 actggatcaggccctttcac 593



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>ref|NM_063300.3| Caenorhabditis elegans IRE1 kinase related family member (ire-1)
            (ire-1) mRNA, complete cds
          Length = 3306

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 5    ttacgagaaagtgatacaca 24
            ||||||||||||||||||||
Sbjct: 1687 ttacgagaaagtgatacaca 1706



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 394      tgctactataaacttgtagtcttg 417
                |||||||||| |||||||||||||
Sbjct: 15020534 tgctactatagacttgtagtcttg 15020557



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>emb|BX004816.11| Zebrafish DNA sequence from clone DKEY-30G5 in linkage group 3, complete
              sequence
          Length = 231341

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 516    tttttgtaaactcaagcataattt 539
              ||||||||||||||| ||||||||
Sbjct: 177670 tttttgtaaactcaatcataattt 177647



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>dbj|BA000027.2| Oryzias latipes DNA, MHC Class I Region
          Length = 425935

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 475    tctgatcagtctttctacat 494
              ||||||||||||||||||||
Sbjct: 243194 tctgatcagtctttctacat 243213



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>gb|AC016745.6| Homo sapiens BAC clone RP11-480C16 from 2, complete sequence
          Length = 157358

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 266    ttggttttcctctgttcagt 285
              ||||||||||||||||||||
Sbjct: 126761 ttggttttcctctgttcagt 126742



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>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 221    actggatcaggccctttcac 240
              ||||||||||||||||||||
Sbjct: 157928 actggatcaggccctttcac 157909



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>dbj|AK174630.1| Ciona intestinalis cDNA, clone:cigd049l15, full insert sequence
          Length = 1813

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 173  aaatggttttcacttccttg 192
            ||||||||||||||||||||
Sbjct: 1545 aaatggttttcacttccttg 1564



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>emb|AL163540.11| Human DNA sequence from clone RP11-348N17 on chromosome 22, complete
             sequence
          Length = 166566

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   ttggttttcctctgttcagt 285
             ||||||||||||||||||||
Sbjct: 21436 ttggttttcctctgttcagt 21455



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>emb|BX005442.10| Zebrafish DNA sequence from clone DKEY-88J15, complete sequence
          Length = 200176

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 516    tttttgtaaactcaagcataattt 539
              ||||||||||||||| ||||||||
Sbjct: 160924 tttttgtaaactcaatcataattt 160901



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>emb|AL731809.17| Human DNA sequence from clone RP13-354N4 on chromosome 9, complete
             sequence
          Length = 202611

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   ttggttttcctctgttcagt 285
             ||||||||||||||||||||
Sbjct: 85403 ttggttttcctctgttcagt 85384



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>emb|BX901950.7| Zebrafish DNA sequence from clone DKEY-111C4 in linkage group 6,
             complete sequence
          Length = 146043

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    tgctccatctttcctgtcag 77
             ||||||||||||||||||||
Sbjct: 70447 tgctccatctttcctgtcag 70466



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>gb|AC145363.4| Dasypus novemcinctus clone VMRC5-356N21, complete sequence
          Length = 108046

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 258   ctgaattcttggttttcctc 277
             ||||||||||||||||||||
Sbjct: 35059 ctgaattcttggttttcctc 35040



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>emb|AL772360.4| Human DNA sequence from clone RP11-35J7 on chromosome 9, complete
             sequence
          Length = 136659

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   ttggttttcctctgttcagt 285
             ||||||||||||||||||||
Sbjct: 70476 ttggttttcctctgttcagt 70457



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>emb|AL591968.4| Human DNA sequence from clone RP13-39F9 on chromosome 9, complete
             sequence
          Length = 73947

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   ttggttttcctctgttcagt 285
             ||||||||||||||||||||
Sbjct: 23668 ttggttttcctctgttcagt 23687



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>gb|M20131.1|RATCYP45I Rat cytochrome P450IIE1 gene, complete cds
          Length = 12728

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 339  cattttcttgctccttgactatat 362
            ||||| ||||||||||||||||||
Sbjct: 9051 catttacttgctccttgactatat 9028



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>emb|AL672144.8| Mouse DNA sequence from clone RP23-40H13 on chromosome X, complete
             sequence
          Length = 85651

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 27    tttgtgcagcatttgacagagctt 50
             |||||||| |||||||||||||||
Sbjct: 64983 tttgtgcaacatttgacagagctt 65006


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,187,598
Number of Sequences: 3902068
Number of extensions: 5187598
Number of successful extensions: 95317
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95153
Number of HSP's gapped (non-prelim): 164
length of query: 577
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 554
effective length of database: 17,143,297,704
effective search space: 9497386928016
effective search space used: 9497386928016
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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