Clone Information

BLAST Search Result

Clone Name	rbasd18d10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK121774.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	206	7e-50
2	dbj\|AK111962.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	206	7e-50
3	dbj\|AK111498.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	206	7e-50
4	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	119	1e-23
5	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	119	1e-23
6	emb\|AL831801.4\|CNS08CAE Oryza sativa chromosome 12, . BAC OSJNBb...	119	1e-23
7	gb\|AY109216.1\| Zea mays PCO122680 mRNA sequence	107	5e-20
8	gb\|BT020443.1\| Arabidopsis thaliana At5g63260 mRNA, complete cds	42	2.4
9	ref\|NM_125721.2\| Arabidopsis thaliana nucleic acid binding AT5G6...	42	2.4
10	gb\|BT020223.1\| Arabidopsis thaliana At5g63260 mRNA, complete cds	42	2.4
11	emb\|BX829663.1\|CNS09ZXX Arabidopsis thaliana Full-length cDNA Co...	42	2.4
12	emb\|BX831419.1\|CNS09ZG2 Arabidopsis thaliana Full-length cDNA Co...	42	2.4
13	gb\|AC009480.4\| Homo sapiens BAC clone RP11-295N18 from 2, comple...	42	2.4
14	emb\|CR382130.1\| Yarrowia lipolytica chromosome D of strain CLIB1...	42	2.4
15	gb\|AC003119.1\|HUAC003119 Human Chromosome 16 BAC clone CIT987SK-...	40	9.6
16	gb\|AC149474.15\| Medicago truncatula clone mth2-122l24, complete ...	40	9.6
17	gb\|AC149080.14\| Medicago truncatula clone mth2-75j5, complete se...	40	9.6
18	emb\|BX901976.22\| Zebrafish DNA sequence from clone DKEY-101P20 i...	40	9.6
19	emb\|BX649288.14\| Zebrafish DNA sequence from clone CH211-205B11 ...	40	9.6
20	gb\|AC073359.12\| Homo sapiens 3 BAC RP11-439C8 (Roswell Park Canc...	40	9.6
21	emb\|BX324146.10\| Zebrafish DNA sequence from clone CH211-207C15 ...	40	9.6
22	gb\|AC011912.7\|AC011912 Homo sapiens chromosome 15 clone RP11-547...	40	9.6
23	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.6
24	emb\|AL805896.12\| Mouse DNA sequence from clone RP23-402I8 on chr...	40	9.6
25	dbj\|AP001859.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.6
26	dbj\|AP003434.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.6
27	gb\|AC073895.22\| Homo sapiens 3 BAC RP11-622L21 (Roswell Park Can...	40	9.6
28	emb\|AL953841.5\| Zebrafish DNA sequence from clone DKEY-44G23 in ...	40	9.6
29	gb\|CP000009.1\| Gluconobacter oxydans 621H, complete genome	40	9.6
30	emb\|BX001053.7\| Mouse DNA sequence from clone RP23-199B9 on chro...	40	9.6
31	emb\|AL772276.15\| Mouse DNA sequence from clone RP23-335F19 on ch...	40	9.6
32	gb\|AC140929.4\| Mus musculus BAC clone RP23-258I3 from 8, complet...	40	9.6
33	emb\|AL844900.3\| Mouse DNA sequence from clone RP23-301L16 on chr...	40	9.6

>dbj|AK121774.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092M18, full
            insert sequence
          Length = 2001

 Score =  206 bits (104), Expect = 7e-50
 Identities = 325/399 (81%), Gaps = 6/399 (1%)
 Strand = Plus / Minus

                                                                        
Query: 296  aaaattaaaagggtgattgtacatgcaagctggcccaaacttgcagactccatagcgttc 355
            |||||| || |||||||||||   ||||||||||||||| |||||||| ||||||||  |
Sbjct: 1648 aaaattgaaggggtgattgtatgcgcaagctggcccaaatttgcagaccccatagcgacc 1589

                                                                        
Query: 356  atagtatgtgcacatgggctgatcaggtctgagtggcaagccgagaggactaagagctct 415
            ||||||||||||||  |||||||||||| | |  |||||||| ||||| |||||||||| 
Sbjct: 1588 atagtatgtgcacacaggctgatcaggttttataggcaagccaagagggctaagagctc- 1530

                                                                        
Query: 416  ggctgttggtggaggcacaagtgaccttggatggtggtacttgcacttgaccttgaattt 475
                  || |||||||||  |||||||||| ||||| || |||||||| | | | |||||
Sbjct: 1529 -----ctgctggaggcaccggtgaccttgggtggtgatatttgcacttcatcctaaattt 1475

                                                                        
Query: 476  acaaaacccacttttaacaaaatgttgacattcaggctcgccaggtctctctgggtattc 535
             ||||| ||||| || |||||||| ||||||||||| | |||||||||||||||||||||
Sbjct: 1474 gcaaaaaccactcttcacaaaatgctgacattcaggttggccaggtctctctgggtattc 1415

                                                                        
Query: 536  atcggagggcagttcttgatgtccctgtacatctgctcccctgtacataggatgattcac 595
             ||||| || |  |  ||||||||  |||  |||| | || |||||||||||||||| | 
Sbjct: 1414 ctcggaaggaacctgctgatgtccaggtatttctggtgccttgtacataggatgatttat 1355

                                                                        
Query: 596  aggaggagctggaaaatgatgaaaagagattccgggagtgtaatatggacctaatggaac 655
            ||||| |||||||||||| || |||| || ||| ||||  |||||||||   || |||||
Sbjct: 1354 aggagcagctggaaaatgttggaaagggactccaggaggataatatggattcaacggaac 1295

                                                   
Query: 656  ctgatggtacccactccattctgaagatggatacattcc 694
            |||||| |||||| ||||||| | || ||||||||||||
Sbjct: 1294 ctgatgatacccattccattcaggaggtggatacattcc 1256

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>dbj|AK111962.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B06, full
            insert sequence
          Length = 1896

 Score =  206 bits (104), Expect = 7e-50
 Identities = 325/399 (81%), Gaps = 6/399 (1%)
 Strand = Plus / Minus

                                                                        
Query: 296  aaaattaaaagggtgattgtacatgcaagctggcccaaacttgcagactccatagcgttc 355
            |||||| || |||||||||||   ||||||||||||||| |||||||| ||||||||  |
Sbjct: 1574 aaaattgaaggggtgattgtatgcgcaagctggcccaaatttgcagaccccatagcgacc 1515

                                                                        
Query: 356  atagtatgtgcacatgggctgatcaggtctgagtggcaagccgagaggactaagagctct 415
            ||||||||||||||  |||||||||||| | |  |||||||| ||||| |||||||||| 
Sbjct: 1514 atagtatgtgcacacaggctgatcaggttttataggcaagccaagagggctaagagctc- 1456

                                                                        
Query: 416  ggctgttggtggaggcacaagtgaccttggatggtggtacttgcacttgaccttgaattt 475
                  || |||||||||  |||||||||| ||||| || |||||||| | | | |||||
Sbjct: 1455 -----ctgctggaggcaccggtgaccttgggtggtgatatttgcacttcatcctaaattt 1401

                                                                        
Query: 476  acaaaacccacttttaacaaaatgttgacattcaggctcgccaggtctctctgggtattc 535
             ||||| ||||| || |||||||| ||||||||||| | |||||||||||||||||||||
Sbjct: 1400 gcaaaaaccactcttcacaaaatgctgacattcaggttggccaggtctctctgggtattc 1341

                                                                        
Query: 536  atcggagggcagttcttgatgtccctgtacatctgctcccctgtacataggatgattcac 595
             ||||| || |  |  ||||||||  |||  |||| | || |||||||||||||||| | 
Sbjct: 1340 ctcggaaggaacctgctgatgtccaggtatttctggtgccttgtacataggatgatttat 1281

                                                                        
Query: 596  aggaggagctggaaaatgatgaaaagagattccgggagtgtaatatggacctaatggaac 655
            ||||| |||||||||||| || |||| || ||| ||||  |||||||||   || |||||
Sbjct: 1280 aggagcagctggaaaatgttggaaagggactccaggaggataatatggattcaacggaac 1221

                                                   
Query: 656  ctgatggtacccactccattctgaagatggatacattcc 694
            |||||| |||||| ||||||| | || ||||||||||||
Sbjct: 1220 ctgatgatacccattccattcaggaggtggatacattcc 1182

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>dbj|AK111498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000H23, full
            insert sequence
          Length = 1919

 Score =  206 bits (104), Expect = 7e-50
 Identities = 325/399 (81%), Gaps = 6/399 (1%)
 Strand = Plus / Minus

                                                                        
Query: 296  aaaattaaaagggtgattgtacatgcaagctggcccaaacttgcagactccatagcgttc 355
            |||||| || |||||||||||   ||||||||||||||| |||||||| ||||||||  |
Sbjct: 1591 aaaattgaaggggtgattgtatgcgcaagctggcccaaatttgcagaccccatagcgacc 1532

                                                                        
Query: 356  atagtatgtgcacatgggctgatcaggtctgagtggcaagccgagaggactaagagctct 415
            ||||||||||||||  |||||||||||| | |  |||||||| ||||| |||||||||| 
Sbjct: 1531 atagtatgtgcacacaggctgatcaggttttataggcaagccaagagggctaagagctc- 1473

                                                                        
Query: 416  ggctgttggtggaggcacaagtgaccttggatggtggtacttgcacttgaccttgaattt 475
                  || |||||||||  |||||||||| ||||| || |||||||| | | | |||||
Sbjct: 1472 -----ctgctggaggcaccggtgaccttgggtggtgatatttgcacttcatcctaaattt 1418

                                                                        
Query: 476  acaaaacccacttttaacaaaatgttgacattcaggctcgccaggtctctctgggtattc 535
             ||||| ||||| || |||||||| ||||||||||| | |||||||||||||||||||||
Sbjct: 1417 gcaaaaaccactcttcacaaaatgctgacattcaggttggccaggtctctctgggtattc 1358

                                                                        
Query: 536  atcggagggcagttcttgatgtccctgtacatctgctcccctgtacataggatgattcac 595
             ||||| || |  |  ||||||||  |||  |||| | || |||||||||||||||| | 
Sbjct: 1357 ctcggaaggaacctgctgatgtccaggtatttctggtgccttgtacataggatgatttat 1298

                                                                        
Query: 596  aggaggagctggaaaatgatgaaaagagattccgggagtgtaatatggacctaatggaac 655
            ||||| |||||||||||| || |||| || ||| ||||  |||||||||   || |||||
Sbjct: 1297 aggagcagctggaaaatgttggaaagggactccaggaggataatatggattcaacggaac 1238

                                                   
Query: 656  ctgatggtacccactccattctgaagatggatacattcc 694
            |||||| |||||| ||||||| | || ||||||||||||
Sbjct: 1237 ctgatgatacccattccattcaggaggtggatacattcc 1199

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  119 bits (60), Expect = 1e-23
 Identities = 180/220 (81%)
 Strand = Plus / Plus

                                                                            
Query: 425      tggaggcacaagtgaccttggatggtggtacttgcacttgaccttgaatttacaaaaccc 484
                |||||||||  |||||||||| ||||| || |||||||| | | | ||||| ||||| ||
Sbjct: 10435989 tggaggcaccggtgaccttgggtggtgatatttgcacttcatcctaaatttgcaaaaacc 10436048

                                                                            
Query: 485      acttttaacaaaatgttgacattcaggctcgccaggtctctctgggtattcatcggaggg 544
                ||| || |||||||| ||||||||||| | ||||||||||||||||||||| ||||| ||
Sbjct: 10436049 actcttcacaaaatgctgacattcaggttggccaggtctctctgggtattcctcggaagg 10436108

                                                                            
Query: 545      cagttcttgatgtccctgtacatctgctcccctgtacataggatgattcacaggaggagc 604
                 |  |  ||||||||  |||  |||| | || |||||||||||||||| | ||||| |||
Sbjct: 10436109 aacctgctgatgtccaggtatttctggtgccttgtacataggatgatttataggagcagc 10436168

                                                        
Query: 605      tggaaaatgatgaaaagagattccgggagtgtaatatgga 644
                ||||||||| || |||| || ||| ||||  |||||||||
Sbjct: 10436169 tggaaaatgttggaaagggactccaggaggataatatgga 10436208



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 73/84 (86%)
 Strand = Plus / Plus

                                                                            
Query: 296      aaaattaaaagggtgattgtacatgcaagctggcccaaacttgcagactccatagcgttc 355
                |||||| || |||||||||||   ||||||||||||||| |||||||| ||||||||  |
Sbjct: 10435481 aaaattgaaggggtgattgtatgcgcaagctggcccaaatttgcagaccccatagcgacc 10435540

                                        
Query: 356      atagtatgtgcacatgggctgatc 379
                ||||||||||||||  ||||||||
Sbjct: 10435541 atagtatgtgcacacaggctgatc 10435564



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 654      acctgatggtacccactccattctgaagatggatacattcc 694
                |||||||| |||||| ||||||| | || ||||||||||||
Sbjct: 10436818 acctgatgatacccattccattcaggaggtggatacattcc 10436858

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  119 bits (60), Expect = 1e-23
 Identities = 180/220 (81%)
 Strand = Plus / Plus

                                                                            
Query: 425      tggaggcacaagtgaccttggatggtggtacttgcacttgaccttgaatttacaaaaccc 484
                |||||||||  |||||||||| ||||| || |||||||| | | | ||||| ||||| ||
Sbjct: 10435871 tggaggcaccggtgaccttgggtggtgatatttgcacttcatcctaaatttgcaaaaacc 10435930

                                                                            
Query: 485      acttttaacaaaatgttgacattcaggctcgccaggtctctctgggtattcatcggaggg 544
                ||| || |||||||| ||||||||||| | ||||||||||||||||||||| ||||| ||
Sbjct: 10435931 actcttcacaaaatgctgacattcaggttggccaggtctctctgggtattcctcggaagg 10435990

                                                                            
Query: 545      cagttcttgatgtccctgtacatctgctcccctgtacataggatgattcacaggaggagc 604
                 |  |  ||||||||  |||  |||| | || |||||||||||||||| | ||||| |||
Sbjct: 10435991 aacctgctgatgtccaggtatttctggtgccttgtacataggatgatttataggagcagc 10436050

                                                        
Query: 605      tggaaaatgatgaaaagagattccgggagtgtaatatgga 644
                ||||||||| || |||| || ||| ||||  |||||||||
Sbjct: 10436051 tggaaaatgttggaaagggactccaggaggataatatgga 10436090



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 73/84 (86%)
 Strand = Plus / Plus

                                                                            
Query: 296      aaaattaaaagggtgattgtacatgcaagctggcccaaacttgcagactccatagcgttc 355
                |||||| || |||||||||||   ||||||||||||||| |||||||| ||||||||  |
Sbjct: 10435363 aaaattgaaggggtgattgtatgcgcaagctggcccaaatttgcagaccccatagcgacc 10435422

                                        
Query: 356      atagtatgtgcacatgggctgatc 379
                ||||||||||||||  ||||||||
Sbjct: 10435423 atagtatgtgcacacaggctgatc 10435446



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 654      acctgatggtacccactccattctgaagatggatacattcc 694
                |||||||| |||||| ||||||| | || ||||||||||||
Sbjct: 10436700 acctgatgatacccattccattcaggaggtggatacattcc 10436740

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>emb|AL831801.4|CNS08CAE Oryza sativa chromosome 12, . BAC OSJNBb0094I20 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 130454

 Score =  119 bits (60), Expect = 1e-23
 Identities = 180/220 (81%)
 Strand = Plus / Plus

                                                                         
Query: 425   tggaggcacaagtgaccttggatggtggtacttgcacttgaccttgaatttacaaaaccc 484
             |||||||||  |||||||||| ||||| || |||||||| | | | ||||| ||||| ||
Sbjct: 88490 tggaggcaccggtgaccttgggtggtgatatttgcacttcatcctaaatttgcaaaaacc 88549

                                                                         
Query: 485   acttttaacaaaatgttgacattcaggctcgccaggtctctctgggtattcatcggaggg 544
             ||| || |||||||| ||||||||||| | ||||||||||||||||||||| ||||| ||
Sbjct: 88550 actcttcacaaaatgctgacattcaggttggccaggtctctctgggtattcctcggaagg 88609

                                                                         
Query: 545   cagttcttgatgtccctgtacatctgctcccctgtacataggatgattcacaggaggagc 604
              |  |  ||||||||  |||  |||| | || |||||||||||||||| | ||||| |||
Sbjct: 88610 aacctgctgatgtccaggtatttctggtgccttgtacataggatgatttataggagcagc 88669

                                                     
Query: 605   tggaaaatgatgaaaagagattccgggagtgtaatatgga 644
             ||||||||| || |||| || ||| ||||  |||||||||
Sbjct: 88670 tggaaaatgttggaaagggactccaggaggataatatgga 88709



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 73/84 (86%)
 Strand = Plus / Plus

                                                                         
Query: 296   aaaattaaaagggtgattgtacatgcaagctggcccaaacttgcagactccatagcgttc 355
             |||||| || |||||||||||   ||||||||||||||| |||||||| ||||||||  |
Sbjct: 87982 aaaattgaaggggtgattgtatgcgcaagctggcccaaatttgcagaccccatagcgacc 88041

                                     
Query: 356   atagtatgtgcacatgggctgatc 379
             ||||||||||||||  ||||||||
Sbjct: 88042 atagtatgtgcacacaggctgatc 88065



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 654   acctgatggtacccactccattctgaagatggatacattcc 694
             |||||||| |||||| ||||||| | || ||||||||||||
Sbjct: 89319 acctgatgatacccattccattcaggaggtggatacattcc 89359

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>gb|AY109216.1| Zea mays PCO122680 mRNA sequence
          Length = 1155

 Score =  107 bits (54), Expect = 5e-20
 Identities = 308/390 (78%), Gaps = 2/390 (0%)
 Strand = Plus / Minus

                                                                       
Query: 306 gggtgattgtacatgcaagctggcccaaacttgcagactccatagcgttcatagtatgtg 365
           ||||| ||| ||||||| ||||||||| |||||||||  ||||||||| ||||||| |||
Sbjct: 858 gggtggttgaacatgcaggctggcccatacttgcagaagccatagcgtccatagtaagtg 799

                                                                       
Query: 366 cacatgggctgatcaggtctgagtggcaagccgagaggactaagagct-ctggctgttgg 424
           ||||  || ||||||||| |||  ||||||||||  || |||||| || |||| || |||
Sbjct: 798 cacacaggttgatcaggtttgataggcaagccgatggggctaagacctgctgg-tggtgg 740

                                                                       
Query: 425 tggaggcacaagtgaccttggatggtggtacttgcacttgaccttgaatttacaaaaccc 484
           || || |    | |||||||||||||| ||  |||| || | | || ||||||| || ||
Sbjct: 739 tgcagactggcgcgaccttggatggtgatatctgcatttcatcctgtatttacagaaacc 680

                                                                       
Query: 485 acttttaacaaaatgttgacattcaggctcgccaggtctctctgggtattcatcggaggg 544
            || ||||| ||||| || |||||||| | |||||||||||| || || ||||| || ||
Sbjct: 679 gctcttaacgaaatgctggcattcaggttggccaggtctctcgggatactcatcagatgg 620

                                                                       
Query: 545 cagttcttgatgtccctgtacatctgctcccctgtacataggatgattcacaggaggagc 604
             ||  |||||||||  ||| ||||||  || ||||||| || ||||||| | | | |||
Sbjct: 619 tggtggttgatgtcctggtatatctgcagccttgtacatcgggtgattcatatgggcagc 560

                                                                       
Query: 605 tggaaaatgatgaaaagagattccgggagtgtaatatggacctaatggaacctgatggta 664
           |||||||||  | ||||  |  ||||||| ||||||||||   || || |||||||| ||
Sbjct: 559 tggaaaatgcgggaaaggaacaccgggagggtaatatggattcaaaggtacctgatgata 500

                                         
Query: 665 cccactccattctgaagatggatacattcc 694
           ||||||||| || |||||||||||||||||
Sbjct: 499 cccactccaatcagaagatggatacattcc 470

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>gb|BT020443.1| Arabidopsis thaliana At5g63260 mRNA, complete cds
          Length = 1308

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 357  tagtatgtgcacatgggctgatcaggtctgagtggcaagcc 397
            |||| ||||||||||  |||||||||||| || ||||||||
Sbjct: 1166 tagtgtgtgcacatgctctgatcaggtcttaggggcaagcc 1126

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>ref|NM_125721.2| Arabidopsis thaliana nucleic acid binding AT5G63260 mRNA, complete
            cds
          Length = 1719

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 357  tagtatgtgcacatgggctgatcaggtctgagtggcaagcc 397
            |||| ||||||||||  |||||||||||| || ||||||||
Sbjct: 1316 tagtgtgtgcacatgctctgatcaggtcttaggggcaagcc 1276

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>gb|BT020223.1| Arabidopsis thaliana At5g63260 mRNA, complete cds
          Length = 1507

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 357  tagtatgtgcacatgggctgatcaggtctgagtggcaagcc 397
            |||| ||||||||||  |||||||||||| || ||||||||
Sbjct: 1236 tagtgtgtgcacatgctctgatcaggtcttaggggcaagcc 1196

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>emb|BX829663.1|CNS09ZXX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB28ZD08 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1592

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 357  tagtatgtgcacatgggctgatcaggtctgagtggcaagcc 397
            |||| ||||||||||  |||||||||||| || ||||||||
Sbjct: 1223 tagtgtgtgcacatgctctgatcaggtcttaggggcaagcc 1183

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>emb|BX831419.1|CNS09ZG2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS88ZF11 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1546

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 357  tagtatgtgcacatgggctgatcaggtctgagtggcaagcc 397
            |||| ||||||||||  |||||||||||| || ||||||||
Sbjct: 1259 tagtgtgtgcacatgctctgatcaggtcttaggggcaagcc 1219

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>gb|AC009480.4| Homo sapiens BAC clone RP11-295N18 from 2, complete sequence
          Length = 188353

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 159   tattttacaagtagaagttat 179
             |||||||||||||||||||||
Sbjct: 82357 tattttacaagtagaagttat 82337

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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 408    agagctctggctgttggtgga 428
              |||||||||||||||||||||
Sbjct: 650408 agagctctggctgttggtgga 650428

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>gb|AC003119.1|HUAC003119 Human Chromosome 16 BAC clone CIT987SK-27D10, complete sequence
          Length = 88036

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    gcaatgatgtatccaagcct 42
             ||||||||||||||||||||
Sbjct: 50297 gcaatgatgtatccaagcct 50278

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>gb|AC149474.15| Medicago truncatula clone mth2-122l24, complete sequence
          Length = 129008

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 489   ttaacaaaatgttgacattc 508
             ||||||||||||||||||||
Sbjct: 51832 ttaacaaaatgttgacattc 51851

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>gb|AC149080.14| Medicago truncatula clone mth2-75j5, complete sequence
          Length = 96907

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 489   ttaacaaaatgttgacattc 508
             ||||||||||||||||||||
Sbjct: 19208 ttaacaaaatgttgacattc 19189

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>emb|BX901976.22| Zebrafish DNA sequence from clone DKEY-101P20 in linkage group 22,
             complete sequence
          Length = 201928

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    caagcctgtttagtttctat 55
             ||||||||||||||||||||
Sbjct: 89818 caagcctgtttagtttctat 89837

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>emb|BX649288.14| Zebrafish DNA sequence from clone CH211-205B11 in linkage group 3,
             complete sequence
          Length = 145373

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 643   gacctaatggaacctgatgg 662
             ||||||||||||||||||||
Sbjct: 97872 gacctaatggaacctgatgg 97853

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>gb|AC073359.12| Homo sapiens 3 BAC RP11-439C8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 178336

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 287    tggatggccaaaattaaaag 306
              ||||||||||||||||||||
Sbjct: 121882 tggatggccaaaattaaaag 121901

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>emb|BX324146.10| Zebrafish DNA sequence from clone CH211-207C15 in linkage group 19,
             complete sequence
          Length = 230267

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 490   taacaaaatgttgacattca 509
             ||||||||||||||||||||
Sbjct: 70939 taacaaaatgttgacattca 70958

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>gb|AC011912.7|AC011912 Homo sapiens chromosome 15 clone RP11-547D13 map 15q21.3, complete
              sequence
          Length = 175264

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 488    tttaacaaaatgttgacattcagg 511
              |||||||||||||| |||||||||
Sbjct: 111781 tttaacaaaatgttaacattcagg 111804

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 126     tcaacatgaaaaccctgcaa 145
               ||||||||||||||||||||
Sbjct: 7121482 tcaacatgaaaaccctgcaa 7121463

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>emb|AL805896.12| Mouse DNA sequence from clone RP23-402I8 on chromosome 4, complete
             sequence
          Length = 210141

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 463   tgaccttgaatttacaaaacccac 486
             |||||||||||||| |||||||||
Sbjct: 49386 tgaccttgaatttataaaacccac 49409

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>dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0485D09
          Length = 150594

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   tcaacatgaaaaccctgcaa 145
             ||||||||||||||||||||
Sbjct: 16130 tcaacatgaaaaccctgcaa 16111

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>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0452F10
          Length = 145120

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 126    tcaacatgaaaaccctgcaa 145
              ||||||||||||||||||||
Sbjct: 109062 tcaacatgaaaaccctgcaa 109043

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>gb|AC073895.22| Homo sapiens 3 BAC RP11-622L21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 167311

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 97    ttgctgacttgcaaaccaaacccc 120
             |||||| |||||||||||||||||
Sbjct: 67502 ttgctgtcttgcaaaccaaacccc 67479

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>emb|AL953841.5| Zebrafish DNA sequence from clone DKEY-44G23 in linkage group 22,
              complete sequence
          Length = 219929

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     caagcctgtttagtttctat 55
              ||||||||||||||||||||
Sbjct: 132456 caagcctgtttagtttctat 132475

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>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 103     acttgcaaaccaaaccccta 122
               ||||||||||||||||||||
Sbjct: 1513131 acttgcaaaccaaaccccta 1513112

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>emb|BX001053.7| Mouse DNA sequence from clone RP23-199B9 on chromosome 4, complete
             sequence
          Length = 111777

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 288   ggatggccaaaattaaaagg 307
             ||||||||||||||||||||
Sbjct: 92610 ggatggccaaaattaaaagg 92591

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>emb|AL772276.15| Mouse DNA sequence from clone RP23-335F19 on chromosome 4, complete
              sequence
          Length = 192682

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 296    aaaattaaaagggtgattgt 315
              ||||||||||||||||||||
Sbjct: 182552 aaaattaaaagggtgattgt 182533

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>gb|AC140929.4| Mus musculus BAC clone RP23-258I3 from 8, complete sequence
          Length = 221905

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 167    aagtagaagttattccaagc 186
              ||||||||||||||||||||
Sbjct: 182602 aagtagaagttattccaagc 182621

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>emb|AL844900.3| Mouse DNA sequence from clone RP23-301L16 on chromosome X, complete
              sequence
          Length = 183256

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 476    acaaaacccacttttaacaa 495
              ||||||||||||||||||||
Sbjct: 164536 acaaaacccacttttaacaa 164555


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,165,496
Number of Sequences: 3902068
Number of extensions: 6165496
Number of successful extensions: 139354
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 139105
Number of HSP's gapped (non-prelim): 246
length of query: 698
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 675
effective length of database: 17,143,297,704
effective search space: 11571725950200
effective search space used: 11571725950200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result