ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LEU3_BACSK (Q5WEN4) 3-isopropylmalate dehydrogenase (EC 1.1.1.85... 31 2.8

>LEU3_BACSK (Q5WEN4) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM|
           dehydrogenase) (IMDH) (3-IPM-DH)
          Length = 364

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
 Frame = +1

Query: 217 YIKMFLLVDGRSGPGISSIYATPFPTRTAELNNSYLTRLLSSV--PRFGGNR-----EDA 375
           Y   F  V+GR G        +P P  T +L       LL +V  P++ GN      E  
Sbjct: 32  YHHTFQFVEGRIGGDAIDATGSPLPEETLDLAKGSDAILLGAVGGPKWDGNAPEKRPEKG 91

Query: 376 LLQMCNLA*TIARDKPVSTLNVL--ANTMKSDI 468
           LLQ+       A  +PV  L  L  A+T+K ++
Sbjct: 92  LLQIRKALGLYANLRPVRVLKPLMGASTLKEEV 124


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,924,816
Number of Sequences: 219361
Number of extensions: 2011583
Number of successful extensions: 3605
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3605
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6143359464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top