ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd18d06 |
|---|---|
| Clone Library Name | barley_pub |
>OPLA_RAT (P97608) 5-oxoprolinase (EC 3.5.2.9) (5-oxo-L-prolinase)| (Pyroglutamase) (5-OPase) Length = 1288 Score = 230 bits (587), Expect = 3e-60 Identities = 113/190 (59%), Positives = 133/190 (70%) Frame = -3 Query: 701 LSPSDKAAVVGGNVLTSQRVTDVVLMAFEACACSQGCMNNLTFGEDTFGYYETIGGGCGA 522 L PS +AAVVGGNVLTSQRV DV+L AF AC+ SQGCMNN+T G GYYET+ GG GA Sbjct: 1067 LDPSPEAAVVGGNVLTSQRVVDVILGAFGACSASQGCMNNVTLGNARMGYYETVAGGAGA 1126 Query: 521 GPTWNGTSGVQCHMTNTRMTDPEIFEQRYPVLLHRFSIXXXXXXXXXXXXXXXLVREIEF 342 GP W+G SGV HMTNTR+TDPEI E RYPV+L RF + +VRE+ F Sbjct: 1127 GPGWHGRSGVHSHMTNTRITDPEILESRYPVILRRFELRPGSGGRGRFRGGDGVVRELVF 1186 Query: 341 RRPVVVSILSERRVHAPRGLKGGENGARGANYLVRKDGRRVYLGGKNTVTVNAGEVLQIL 162 R ++S+L+ERR P GL GGE GARG N L+RKDGR V LGGK +VTV G+V + Sbjct: 1187 REEALLSVLTERRAFQPYGLHGGEPGARGLNLLIRKDGRTVNLGGKTSVTVYPGDVFCLH 1246 Query: 161 TPGGGGFGSP 132 TPGGGG+G P Sbjct: 1247 TPGGGGYGDP 1256
>OPLA_HUMAN (O14841) 5-oxoprolinase (EC 3.5.2.9) (5-oxo-L-prolinase)| (Pyroglutamase) (5-OPase) Length = 1288 Score = 229 bits (583), Expect = 8e-60 Identities = 112/190 (58%), Positives = 133/190 (70%) Frame = -3 Query: 701 LSPSDKAAVVGGNVLTSQRVTDVVLMAFEACACSQGCMNNLTFGEDTFGYYETIGGGCGA 522 L PS +AAVVGGNVLTSQRV DV+L AF ACA SQGCMNN+T G GYYET+ GG GA Sbjct: 1067 LDPSPEAAVVGGNVLTSQRVVDVILGAFGACAASQGCMNNVTLGNAHMGYYETVAGGAGA 1126 Query: 521 GPTWNGTSGVQCHMTNTRMTDPEIFEQRYPVLLHRFSIXXXXXXXXXXXXXXXLVREIEF 342 GP+W+G SGV HMTNTR+TDPEI E RYPV+L RF + + RE+ F Sbjct: 1127 GPSWHGRSGVHSHMTNTRITDPEILESRYPVILRRFELRRGSGGRGRFRGGDGVTRELLF 1186 Query: 341 RRPVVVSILSERRVHAPRGLKGGENGARGANYLVRKDGRRVYLGGKNTVTVNAGEVLQIL 162 R ++S+L+ERR P GL GGE GARG N L+RK+GR V LGGK +VTV G+V + Sbjct: 1187 REEALLSVLTERRAFRPYGLHGGEPGARGLNLLIRKNGRTVNLGGKTSVTVYPGDVFCLH 1246 Query: 161 TPGGGGFGSP 132 TPGGGG+G P Sbjct: 1247 TPGGGGYGDP 1256
>OPLA_MOUSE (Q8K010) 5-oxoprolinase (EC 3.5.2.9) (5-oxo-L-prolinase)| (Pyroglutamase) (5-OPase) Length = 1288 Score = 228 bits (582), Expect = 1e-59 Identities = 112/190 (58%), Positives = 131/190 (68%) Frame = -3 Query: 701 LSPSDKAAVVGGNVLTSQRVTDVVLMAFEACACSQGCMNNLTFGEDTFGYYETIGGGCGA 522 L PS +AAVVGGNVLTSQRV DV+L AF ACA SQGCMNN+T G GYYET+ GG GA Sbjct: 1067 LDPSPEAAVVGGNVLTSQRVVDVILGAFGACAASQGCMNNVTLGNARMGYYETVAGGAGA 1126 Query: 521 GPTWNGTSGVQCHMTNTRMTDPEIFEQRYPVLLHRFSIXXXXXXXXXXXXXXXLVREIEF 342 GP W+G SGV HMTNTR+TDPEI E RYPV+L RF + +VRE+ F Sbjct: 1127 GPGWHGRSGVHSHMTNTRITDPEILESRYPVILRRFELRPGSGGRGRFRGGDGVVRELVF 1186 Query: 341 RRPVVVSILSERRVHAPRGLKGGENGARGANYLVRKDGRRVYLGGKNTVTVNAGEVLQIL 162 R ++S+L+ERR P GL GGE G RG N L+RKDGR V LGGK +VTV G+ + Sbjct: 1187 REEALLSVLTERRAFQPYGLHGGEPGTRGLNLLIRKDGRTVNLGGKTSVTVYPGDAFCLH 1246 Query: 161 TPGGGGFGSP 132 TPGGGG+G P Sbjct: 1247 TPGGGGYGDP 1256
>OPLA_BOVIN (Q75WB5) 5-oxoprolinase (EC 3.5.2.9) (5-oxo-L-prolinase)| (Pyroglutamase) (5-OPase) Length = 1288 Score = 228 bits (580), Expect = 2e-59 Identities = 112/190 (58%), Positives = 131/190 (68%) Frame = -3 Query: 701 LSPSDKAAVVGGNVLTSQRVTDVVLMAFEACACSQGCMNNLTFGEDTFGYYETIGGGCGA 522 L PS AAVVGGNVLTSQRV DV+L AF ACA SQGCMNN+T G GYYET+ GG GA Sbjct: 1067 LDPSPDAAVVGGNVLTSQRVVDVILGAFGACAASQGCMNNVTLGNAHMGYYETVAGGAGA 1126 Query: 521 GPTWNGTSGVQCHMTNTRMTDPEIFEQRYPVLLHRFSIXXXXXXXXXXXXXXXLVREIEF 342 GP W+G SGV HMTNTR+TDPEI E RYPV+L RF + ++RE+ F Sbjct: 1127 GPGWHGRSGVHSHMTNTRITDPEILESRYPVILRRFELRLGSGGRGRFRGGDGIIRELLF 1186 Query: 341 RRPVVVSILSERRVHAPRGLKGGENGARGANYLVRKDGRRVYLGGKNTVTVNAGEVLQIL 162 R ++S+L+ERR P GL GGE GARG N L+RKDGR V LGGK +V V G+V + Sbjct: 1187 REEALLSVLTERRAFQPYGLMGGEPGARGLNLLIRKDGRTVNLGGKTSVPVYPGDVFCLH 1246 Query: 161 TPGGGGFGSP 132 TPGGGG+G P Sbjct: 1247 TPGGGGYGDP 1256
>YAOE_SCHPO (Q10093) Hypothetical protein C11D3.14c in chromosome I| Length = 1260 Score = 211 bits (538), Expect = 1e-54 Identities = 111/199 (55%), Positives = 132/199 (66%), Gaps = 10/199 (5%) Frame = -3 Query: 701 LSPSDKAAVVGGNVLTSQRVTDVVLMAFEACACSQGCMNNLTFG------EDTFGYYETI 540 L+PS+ AAVVGGNVLTSQR+TDV+L AF CA SQGCMNNLTFG E+ F YETI Sbjct: 1059 LNPSETAAVVGGNVLTSQRITDVILKAFSICAASQGCMNNLTFGYDGENGEEGFAMYETI 1118 Query: 539 GGGCGAGPTWNGTSGVQCHMTNTRMTDPEIFEQRYPVLLHRFSIXXXXXXXXXXXXXXXL 360 GG GAGPTWNGTSGV HMTNTR+TDPE+ E+R PV+L RF + + Sbjct: 1119 AGGAGAGPTWNGTSGVHTHMTNTRITDPEVVERRAPVILRRFCLRENSGGKGEYHGGDGV 1178 Query: 359 VREIEFRRPVVVSILSERRVHAPRGLKGGENGARGANYLVRKDG----RRVYLGGKNTVT 192 +R EFRR + SILSERR AP G+ GGE+GA G N + R V LGGKN V Sbjct: 1179 IRHFEFRRSMHCSILSERRSRAPYGMNGGEDGAMGVNTWIDCSNPDFPRYVNLGGKNHVL 1238 Query: 191 VNAGEVLQILTPGGGGFGS 135 + G+ + I TPGGGG+G+ Sbjct: 1239 MGKGDHIVIETPGGGGYGA 1257
>YAOF_SCHPO (Q10094) Hypothetical protein C11D3.15 in chromosome I| Length = 1317 Score = 199 bits (505), Expect = 9e-51 Identities = 107/209 (51%), Positives = 135/209 (64%), Gaps = 19/209 (9%) Frame = -3 Query: 701 LSPSDKAAVVGGNVLTSQRVTDVVLMAFEACACSQGCMNNLTFG-----------EDTFG 555 L PS+ AAVVGGNVLTSQR+TD +L AF+ACA SQG NNLTFG + FG Sbjct: 1077 LKPSETAAVVGGNVLTSQRITDTILKAFQACAASQGDTNNLTFGIGGKDPETGEVKPGFG 1136 Query: 554 YYETIGGGCGAGPTWNGTSGVQCHMTNTRMTDPEIFEQRYPVLLHRFSIXXXXXXXXXXX 375 YYETI GG GA +GTSGV HMTNTR+TD E+ E+RYPV+L +F I Sbjct: 1137 YYETICGGSGAIDGLDGTSGVHTHMTNTRITDLEVLERRYPVILRKFIIRENSGGAGKYK 1196 Query: 374 XXXXLVREIEFRRPVVVSILSERRVHAPRGLKGGENGARGANYLVRKD--------GRRV 219 ++R+IEFR PV +SILSERR + P G+KGG++ G N +RKD R++ Sbjct: 1197 GGDGVIRDIEFRIPVTLSILSERRAYHPYGMKGGKDAECGKNIWIRKDILPSGEQRVRQI 1256 Query: 218 YLGGKNTVTVNAGEVLQILTPGGGGFGSP 132 +GGKNT + AG+ + I+TPGGGG+G P Sbjct: 1257 NVGGKNTCHMQAGDHIVIMTPGGGGYGPP 1285
>YKV5_YEAST (P28273) Hypothetical 140.4 kDa protein in URA1-DOA1 intergenic| region Length = 1286 Score = 189 bits (481), Expect = 5e-48 Identities = 107/207 (51%), Positives = 125/207 (60%), Gaps = 19/207 (9%) Frame = -3 Query: 701 LSPSDKAAVVGGNVLTSQRVTDVVLMAFEACACSQGCMNNLTFGEDT------------F 558 LSP AAVVGGNVLTSQRVTDV+L F A SQG NN TFG F Sbjct: 1076 LSPRSGAAVVGGNVLTSQRVTDVILKTFNVMADSQGDCNNFTFGTGGNSGNKTDKQIKGF 1135 Query: 557 GYYETIGGGCGAGPT------WNGTSGVQCHMTNTRMTDPEIFEQRYPVLLHRFSIXXXX 396 GYYETI GG GAG WNG+ V +MTNTRMTD E+FE+RYPVLL FSI Sbjct: 1136 GYYETICGGSGAGADSWRGSGWNGSDAVHTNMTNTRMTDTEVFERRYPVLLKEFSIRRGS 1195 Query: 395 XXXXXXXXXXXLVREIEFRRPVVVSILSERRVHAPRGLKGGENGARGANYLVR-KDGRRV 219 +VR+++FR+ V SILSERRV P G+KGG++G+RG N VR G + Sbjct: 1196 GGKGKYTGGNGVVRDVQFRKAVTASILSERRVIGPHGIKGGQDGSRGENLWVRHSTGALI 1255 Query: 218 YLGGKNTVTVNAGEVLQILTPGGGGFG 138 +GGKNT+ G+ I TPGGGGFG Sbjct: 1256 NVGGKNTIYAQPGDRFIIKTPGGGGFG 1282
>Y963_METJA (Q58373) Hypothetical protein MJ0963| Length = 563 Score = 127 bits (320), Expect = 3e-29 Identities = 70/196 (35%), Positives = 110/196 (56%), Gaps = 6/196 (3%) Frame = -3 Query: 701 LSPSDKAAVVGGNVLTSQRVTDVVLMAF------EACACSQGCMNNLTFGEDTFGYYETI 540 ++P A V GNV TSQR+ DV+ A A S G MNN+ G + +YETI Sbjct: 319 VNPKKPAPVSVGNVETSQRIVDVIFKALYHEFPDRVPAASNGSMNNVIIGGRGWAFYETI 378 Query: 539 GGGCGAGPTWNGTSGVQCHMTNTRMTDPEIFEQRYPVLLHRFSIXXXXXXXXXXXXXXXL 360 GGG G +G GV +MTNT T E+ E YP+++ +S+ + Sbjct: 379 GGGFGGRNGKDGVDGVHANMTNTLNTPIEVIENEYPIMILEYSLREDSGGAGKYRGGLGI 438 Query: 359 VREIEFRRPVVVSILSERRVHAPRGLKGGENGARGANYLVRKDGRRVYLGGKNTVTVNAG 180 R + ++SI+++R +P G+ G +GA G +Y++ KDG+++ L GK+T+ ++ G Sbjct: 439 RRVYKMLSDCMLSIIADRIKISPWGVNNGYSGACGEHYVI-KDGKKIPLSGKDTLYLSCG 497 Query: 179 EVLQILTPGGGGFGSP 132 ++++I TPGGGG+GSP Sbjct: 498 DIVEINTPGGGGYGSP 513
>HYUB_PSESN (Q01263) Hydantoin utilization protein B (ORF3)| Length = 592 Score = 47.8 bits (112), Expect = 3e-05 Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 2/148 (1%) Frame = -3 Query: 569 EDTFGYYETIGGGCGAGPTWNGTSGVQCHMTNTRMTDPEIFEQRYPVLLHRFSIXXXXXX 390 E+ + Y + + G G +G V NTR E E YP+ ++R+ + Sbjct: 398 ENYWVYMDIMEGSYGGRYGKDGMDAVDTLYANTRNNPIEDIESHYPLRVNRYELRDNDSA 457 Query: 389 XXXXXXXXXLVREIEFRRPVVVSILSERRVHAPRGLKGGENGARGA-NYLVRKDGRRVYL 213 +RE+ F S+ ++ +AP G G++G G+ + + V L Sbjct: 458 PGKWRGGIGSIREVSFLADGSFSVEADGHKYAPWGFDDGQDGYVGSLSIRDNETNELVQL 517 Query: 212 GGK-NTVTVNAGEVLQILTPGGGGFGSP 132 K +G +Q++ P GGG+G+P Sbjct: 518 PSKLPNRHAQSGSTIQLVGPCGGGYGNP 545
>MYST4_MACFA (Q8WML3) Histone acetyltransferase MYST4 (EC 2.3.1.48) (EC 2.3.1.-)| (MYST protein 4) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein 4) Length = 1784 Score = 32.3 bits (72), Expect = 1.4 Identities = 20/83 (24%), Positives = 37/83 (44%) Frame = +3 Query: 282 QSPGSMHPPLRKNAHNNRPAEFNLPYKAITASVETRASAAVSDAKSVQKNGISLLKDLWI 461 ++P S + + N ++ + Y +T+S T++S AV+ S S+L+ I Sbjct: 1392 ENPSSYDSTMGGSICGNGSSQNSCSYSNLTSSSLTQSSCAVTQQMSNISGSCSMLQQTSI 1451 Query: 462 SHPCVCHVTLNTTCTIPGRPGAT 530 S P C V C + P ++ Sbjct: 1452 SSPPTCSVKSPQGCVVERPPSSS 1474
>MYST4_HUMAN (Q8WYB5) Histone acetyltransferase MYST4 (EC 2.3.1.48) (EC 2.3.1.-)| (MYST protein 4) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein 4) (Histone acetyltransferase MOZ2) (Monocytic leukemia zinc finger protein-related factor) (Histone acetyltransferas Length = 2073 Score = 32.3 bits (72), Expect = 1.4 Identities = 20/83 (24%), Positives = 37/83 (44%) Frame = +3 Query: 282 QSPGSMHPPLRKNAHNNRPAEFNLPYKAITASVETRASAAVSDAKSVQKNGISLLKDLWI 461 ++P S + + N ++ + Y +T+S T++S AV+ S S+L+ I Sbjct: 1681 ENPSSYDSTMGGSICGNGSSQNSCSYSNLTSSSLTQSSCAVTQQMSNISGSCSMLQQTSI 1740 Query: 462 SHPCVCHVTLNTTCTIPGRPGAT 530 S P C V C + P ++ Sbjct: 1741 SSPPTCSVKSPQGCVVERPPSSS 1763
>MYST4_MOUSE (Q8BRB7) Histone acetyltransferase MYST4 (EC 2.3.1.48) (EC 2.3.1.-)| (MYST protein 4) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein 4) (Querkopf protein) Length = 1872 Score = 32.0 bits (71), Expect = 1.9 Identities = 20/83 (24%), Positives = 37/83 (44%) Frame = +3 Query: 282 QSPGSMHPPLRKNAHNNRPAEFNLPYKAITASVETRASAAVSDAKSVQKNGISLLKDLWI 461 ++P S + + N ++ + Y ++T+S T+ S AV+ S S+L+ I Sbjct: 1480 ENPSSYDSTMGGSICGNGSSQNSCSYSSLTSSNLTQNSCAVTQQMSNISGSCSMLQQTSI 1539 Query: 462 SHPCVCHVTLNTTCTIPGRPGAT 530 S P C V C + P ++ Sbjct: 1540 SSPPTCSVKSPQGCVVERPPSSS 1562
>RPOA1_HALSA (Q9HM79) DNA-directed RNA polymerase subunit A' (EC 2.7.7.6)| Length = 971 Score = 30.8 bits (68), Expect = 4.2 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = -3 Query: 296 APRGLKGGENGARGANYLVRKDGRRV 219 A R ++ G G GANY+ R DGRRV Sbjct: 433 ARRYVRNGPEGHPGANYVTRPDGRRV 458
>MURB_LEGPL (Q5WTI8) UDP-N-acetylenolpyruvoylglucosamine reductase (EC| 1.1.1.158) (UDP-N-acetylmuramate dehydrogenase) Length = 308 Score = 30.0 bits (66), Expect = 7.1 Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 8/59 (13%) Frame = -3 Query: 587 NNLTFGEDTFGYYETIGG------GCGAGPTWNGTSGVQC--HMTNTRMTDPEIFEQRY 435 NNL+ GE G T+GG GC G TW VQ R PE FE Y Sbjct: 117 NNLSGGEFWAGIPGTMGGALRMNAGCHGGETWQSVIEVQTINRRGEIRTRKPEEFEVAY 175
>MURB_LEGPH (Q5ZSA6) UDP-N-acetylenolpyruvoylglucosamine reductase (EC| 1.1.1.158) (UDP-N-acetylmuramate dehydrogenase) Length = 308 Score = 30.0 bits (66), Expect = 7.1 Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 8/59 (13%) Frame = -3 Query: 587 NNLTFGEDTFGYYETIGG------GCGAGPTWNGTSGVQC--HMTNTRMTDPEIFEQRY 435 NNL+ GE G T+GG GC G TW VQ R PE FE Y Sbjct: 117 NNLSGGEFWAGIPGTMGGALRMNAGCHGGETWQSVIEVQTINRRGEIRTRKPEEFEVAY 175
>MURB_LEGPA (Q5X1S7) UDP-N-acetylenolpyruvoylglucosamine reductase (EC| 1.1.1.158) (UDP-N-acetylmuramate dehydrogenase) Length = 303 Score = 30.0 bits (66), Expect = 7.1 Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 8/59 (13%) Frame = -3 Query: 587 NNLTFGEDTFGYYETIGG------GCGAGPTWNGTSGVQC--HMTNTRMTDPEIFEQRY 435 NNL+ GE G T+GG GC G TW VQ R PE FE Y Sbjct: 112 NNLSEGEFWAGIPGTMGGALRMNAGCHGGETWQSVIEVQTINRRGEIRTRKPEEFEVAY 170
>CHA2_BOMMO (P08825) Chorion class A protein L12 precursor| Length = 132 Score = 29.6 bits (65), Expect = 9.3 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = -3 Query: 605 CSQGCMNNLTFGEDTFGYYETIGGGCGAGPTWNGTSGV 492 C+Q C+ ++ G Y GGCG G WNG +G+ Sbjct: 10 CAQACLI-----QNVCGLYLGGLGGCGCGGGWNGWNGL 42
>Y3058_BORPA (Q7W669) UPF0078 membrane protein BPP3058| Length = 215 Score = 29.6 bits (65), Expect = 9.3 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -2 Query: 147 RFRFSLMVSVIICLVFYLHRIKLAHTLSGT 58 R L ++VI L+FY HR +A L GT Sbjct: 178 RLEVGLAIAVISALLFYRHRANIARLLKGT 207
>Y3021_BORBR (Q7WI35) UPF0078 membrane protein BB3021| Length = 215 Score = 29.6 bits (65), Expect = 9.3 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -2 Query: 147 RFRFSLMVSVIICLVFYLHRIKLAHTLSGT 58 R L ++VI L+FY HR +A L GT Sbjct: 178 RLEVGLAIAVISALLFYRHRANIARLLKGT 207
>Y1718_BORPE (Q7VXN3) UPF0078 membrane protein BP1718| Length = 215 Score = 29.6 bits (65), Expect = 9.3 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -2 Query: 147 RFRFSLMVSVIICLVFYLHRIKLAHTLSGT 58 R L ++VI L+FY HR +A L GT Sbjct: 178 RLEVGLAIAVISALLFYRHRANIARLLKGT 207 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,904,861 Number of Sequences: 219361 Number of extensions: 1943608 Number of successful extensions: 7029 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 6409 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7004 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7026286028 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
