ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd17o03 |
|---|---|
| Clone Library Name | barley_pub |
>MST2_DROHY (Q08696) Axoneme-associated protein mst101(2)| Length = 1391 Score = 43.9 bits (102), Expect = 5e-04 Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 12/151 (7%) Frame = -2 Query: 669 ANHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQ------------ 526 A K A KKQC +E + + CE + ++ A K+QC + Sbjct: 1004 AKKQKEAAEKKQC-EERAKKLKEAAEQKQCEERAKKLKEAAEKKQCEERAKKLKEAAEQK 1062 Query: 525 QCMRYGLNLDVGXGDDVIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRRE 346 QC L E +E E ++ C+ + + K A KKQC +E ++E Sbjct: 1063 QCEERAKKLKEAAEKKQCEERAKKEKEAAEKK--QCEERAKKLKEAAEKKQC-EERAKKE 1119 Query: 345 HHHPSRAACERKCSHWRDPTRKERCVQTCMR 253 + CE ++ K++C + + Sbjct: 1120 KEAAEKKRCEEAAKREKEAAEKKKCAEAAKK 1150 Score = 43.5 bits (101), Expect = 6e-04 Identities = 30/143 (20%), Positives = 60/143 (41%), Gaps = 5/143 (3%) Frame = -2 Query: 684 RATSSANHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGL 505 + +A K A KK+C +E ++ + CE + ++ A ++QC ++ + Sbjct: 983 KCAEAAKKEKEAATKKKC-EERAKKQKEAAEKKQCEERAKKLKEAAEQKQCEERAKKL-- 1039 Query: 504 NLDVGXGDDVIERPHAEE-----VEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHH 340 + E+ EE E +Q C+ + + K A KKQC +E ++E Sbjct: 1040 -------KEAAEKKQCEERAKKLKEAAEQK--QCEERAKKLKEAAEKKQC-EERAKKEKE 1089 Query: 339 HPSRAACERKCSHWRDPTRKERC 271 + CE + ++ K++C Sbjct: 1090 AAEKKQCEERAKKLKEAAEKKQC 1112 Score = 41.6 bits (96), Expect = 0.002 Identities = 29/135 (21%), Positives = 52/135 (38%) Frame = -2 Query: 657 KVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLNLDVGXGDD 478 K A KKQC +E +E + CE + ++ A K+QC ++ + Sbjct: 1072 KEAAEKKQC-EERAKKEKEAAEKKQCEERAKKLKEAAEKKQCEERAKK------------ 1118 Query: 477 VIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHW 298 E+ AE+ C+ + K A KK+C E ++E + C Sbjct: 1119 --EKEAAEK--------KRCEEAAKREKEAAEKKKCA-EAAKKEKEATEKQKCAEAAKKE 1167 Query: 297 RDPTRKERCVQTCMR 253 ++ K++C + R Sbjct: 1168 KEAAEKKKCAEAAKR 1182 Score = 38.1 bits (87), Expect = 0.026 Identities = 28/139 (20%), Positives = 52/139 (37%) Frame = -2 Query: 669 ANHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLNLDVG 490 A K KK+C +E ++E + CE+ ++ A K++C + Sbjct: 371 AKKKKEADEKKKC-EEAANKEKKAAEKKKCEKAAKERKEAAEKKKCEE------------ 417 Query: 489 XGDDVIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERK 310 A + E + C+ ++ K A KK+C E ++E R CE Sbjct: 418 ----------AAKKEKEAAERKKCEELAKNIKKAAEKKKC-KEAAKKEKEAAERKKCEEL 466 Query: 309 CSHWRDPTRKERCVQTCMR 253 + K++C +T + Sbjct: 467 AKKIKKAAEKKKCEETAKK 485 Score = 37.4 bits (85), Expect = 0.045 Identities = 27/144 (18%), Positives = 52/144 (36%) Frame = -2 Query: 684 RATSSANHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGL 505 + +A K A KK+C +E +E R CE + A K++C + Sbjct: 574 KCEKAAKERKEAAEKKKC-EEAAKKEKEVAERKKCEELAKKIKKAAEKKKCKE------- 625 Query: 504 NLDVGXGDDVIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRA 325 A + E + + C + K A KK+C + ++E + Sbjct: 626 ---------------AAKKEKEAAEREKCGELAKKIKKAAEKKKC-KKLAKKEKETAEKK 669 Query: 324 ACERKCSHWRDPTRKERCVQTCMR 253 CE+ ++ K++C + + Sbjct: 670 KCEKAAKKRKEAAEKKKCAEAAKK 693 Score = 35.4 bits (80), Expect = 0.17 Identities = 27/139 (19%), Positives = 51/139 (36%) Frame = -2 Query: 669 ANHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLNLDVG 490 A K A KK+C ++ + + CE+ ++ A K++C + + Sbjct: 515 AKKEKETAEKKKC-EKAAKKRKEAAEKKKCEKAAKKRKEAAEKKKCEKSAKK-------- 565 Query: 489 XGDDVIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERK 310 R A E + C+ + K A KK+C +E ++E R CE Sbjct: 566 -------RKEAAEKK-------KCEKAAKERKEAAEKKKC-EEAAKKEKEVAERKKCEEL 610 Query: 309 CSHWRDPTRKERCVQTCMR 253 + K++C + + Sbjct: 611 AKKIKKAAEKKKCKEAAKK 629 Score = 35.0 bits (79), Expect = 0.22 Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 4/148 (2%) Frame = -2 Query: 684 RATSSANHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQC--VQQCMRY 511 + +A K A KK+C +E +E R CE + A K++C + + + Sbjct: 686 KCAEAAKKEKEAAEKKKC-EEAAKKEKEAAERKKCEELAKKIKKAAEKKKCKKLAKKKKA 744 Query: 510 GLNLDVGXGDDVIERPHAEEVEVDDQSNDSCDHKCQH--HKVPARKKQCVDECHRREHHH 337 G + G+ ++ E+ KC+ K A KK+C E ++E Sbjct: 745 GEKNKLKKGNKKGKKALKEK------------KKCRELAKKKAAEKKKC-KEAAKKEKEA 791 Query: 336 PSRAACERKCSHWRDPTRKERCVQTCMR 253 + CE+ ++ K++C +T + Sbjct: 792 AEKKKCEKTAKKRKEEAEKKKCEKTAKK 819 Score = 32.0 bits (71), Expect = 1.9 Identities = 24/124 (19%), Positives = 43/124 (34%) Frame = -2 Query: 684 RATSSANHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGL 505 + +A K A+KK+C D +E CE ++ A K++C + Sbjct: 1175 KCAEAAKREKEAAQKKKCADLA-KKEQEPAEMKKCEEAAKKEKEAAEKQKCAK------- 1226 Query: 504 NLDVGXGDDVIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRA 325 A + E + C + + A KK+C E ++E + Sbjct: 1227 ---------------AAKKEKEAAEKKKCAEAAKKEQEAAEKKKCA-EAAKKEKEAEKKR 1270 Query: 324 ACER 313 CE+ Sbjct: 1271 KCEK 1274 Score = 31.2 bits (69), Expect = 3.2 Identities = 25/135 (18%), Positives = 47/135 (34%) Frame = -2 Query: 657 KVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLNLDVGXGDD 478 K A KK+C D + + C ++ K+ C + + D+ Sbjct: 327 KEKALKKKCKD-LGRKMKEEAEKKKCAALAKKQKEEDEKKACKELAKKKK------EADE 379 Query: 477 VIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHW 298 + A E C+ + K A KK+C +E ++E R CE + Sbjct: 380 KKKCEEAANKEKKAAEKKKCEKAAKERKEAAEKKKC-EEAAKKEKEAAERKKCEELAKNI 438 Query: 297 RDPTRKERCVQTCMR 253 + K++C + + Sbjct: 439 KKAAEKKKCKEAAKK 453
>VCLB_GOSHI (P09801) Vicilin C72 precursor (Alpha-globulin B)| Length = 588 Score = 43.1 bits (100), Expect = 8e-04 Identities = 31/127 (24%), Positives = 46/127 (36%), Gaps = 13/127 (10%) Frame = -2 Query: 651 PARKKQCVDECHSREHHHPSRASCERKCSHW------------RDPARK-EQCVQQCMRY 511 P R + C C + CE C DP R+ E+C Q+C + Sbjct: 38 PKRYEDCRRRCEWDTRGQKEQQQCEESCKSQYGEKDQQQRHRPEDPQRRYEECQQECRQQ 97 Query: 510 GLNLDVGXGDDVIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPS 331 ++R E+ + Q + H Q + P RK+QCV EC R +P Sbjct: 98 EERQRPQCQQRCLKRFEQEQQQSQRQFQECQQHCHQQEQRPERKQQCVRECRERYQENPW 157 Query: 330 RAACERK 310 R E + Sbjct: 158 RREREEE 164 Score = 35.0 bits (79), Expect = 0.22 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 9/117 (7%) Frame = -2 Query: 582 CERKCSHWRDPARKEQ--CVQQCM-RYGLNLDVGXGDDVIERPHAEEVEVDDQSNDSCDH 412 C R+C W +KEQ C + C +YG D +R E+ + + + C Sbjct: 44 CRRRCE-WDTRGQKEQQQCEESCKSQYGEK-------DQQQRHRPEDPQ---RRYEECQQ 92 Query: 411 KCQHHKVPARKKQCVDECHRREHHHPSRAA-----CERKCSHWRD-PTRKERCVQTC 259 +C+ + ++ QC C +R ++ C++ C P RK++CV+ C Sbjct: 93 ECRQQE-ERQRPQCQQRCLKRFEQEQQQSQRQFQECQQHCHQQEQRPERKQQCVREC 148
>VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A)| Length = 605 Score = 42.7 bits (99), Expect = 0.001 Identities = 32/134 (23%), Positives = 49/134 (36%), Gaps = 11/134 (8%) Frame = -2 Query: 645 RKKQCVDECHSREHHHPSRASCERKCS---------HWRDPARKEQ-CVQQCMRYGLNLD 496 R + C C + CE + DP R+ Q C Q C + L Sbjct: 40 RYEDCRKRCQLETRGQTEQDKCEDRSETQLKEEQQRDGEDPQRRYQDCRQHCQQEERRLR 99 Query: 495 VGXGDDVIERPHAEEVEVDDQSNDSCDHKCQ-HHKVPARKKQCVDECHRREHHHPSRAAC 319 E+ ++ + D+ C +CQ + P RK+QCV EC + P + Sbjct: 100 PHCEQSCREQYEKQQQQQPDKQFKECQQRCQWQEQRPERKQQCVKECREQYQEDPWKGER 159 Query: 318 ERKCSHWRDPTRKE 277 E K WR+ +E Sbjct: 160 ENK---WREEEEEE 170 Score = 30.8 bits (68), Expect = 4.2 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 7/61 (11%) Frame = -2 Query: 420 CDHKCQHHKVPAR---KKQCVDECHRREHHHPSRA--ACERKCSHWRD--PTRKERCVQT 262 C CQ + R ++ C ++ +++ P + C+++C W++ P RK++CV+ Sbjct: 87 CRQHCQQEERRLRPHCEQSCREQYEKQQQQQPDKQFKECQQRCQ-WQEQRPERKQQCVKE 145 Query: 261 C 259 C Sbjct: 146 C 146 Score = 30.4 bits (67), Expect = 5.5 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = -2 Query: 651 PARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKE 538 P RK+QCV EC + P + E K WR+ +E Sbjct: 136 PERKQQCVKECREQYQEDPWKGERENK---WREEEEEE 170
>MST1_DROHY (Q08695) Axoneme-associated protein mst101(1)| Length = 344 Score = 41.2 bits (95), Expect = 0.003 Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 3/147 (2%) Frame = -2 Query: 684 RATSSANHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGL 505 + +A K A KK+C E +E + C ++ A K++C + + Sbjct: 108 KCAEAAKKEKEAAEKKKCA-EAAKKEKEAAEKKKCAEAAKKEKEAAEKKKCAEAAKKEKE 166 Query: 504 NLDVGXGDDVIERPHAEEVEVDDQS---NDSCDHKCQHHKVPARKKQCVDECHRREHHHP 334 + + ++ E+ +Q C + K A KK+C +E ++E Sbjct: 167 AAEKKKCAEAAQKKKCAELAKKEQEAAEKKKCAEAAKKEKEAAEKKKC-EERAKKEKEAA 225 Query: 333 SRAACERKCSHWRDPTRKERCVQTCMR 253 + CE + ++ K++C + + Sbjct: 226 EKKKCEERAKKEKEAAEKKKCAEAAKK 252
>VCL_THECC (Q43358) Vicilin precursor| Length = 525 Score = 32.3 bits (72), Expect = 1.4 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 1/104 (0%) Frame = -2 Query: 582 CERKC-SHWRDPARKEQCVQQCMRYGLNLDVGXGDDVIERPHAEEVEVDDQSNDSCDHKC 406 C+R+C S + +EQC Q+C ER + E+ + Sbjct: 45 CQRRCESEATEEREQEQCEQRC----------------EREYKEQ------------QRQ 76 Query: 405 QHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKER 274 Q ++ + +QC C ++ + C+RKC W +ER Sbjct: 77 QEEELQRQYQQCQGRCQEQQQGQREQQQCQRKC--WEQYKEQER 118
>GLCAP_SOYBN (P11827) Beta-conglycinin, alpha' chain precursor| Length = 639 Score = 31.6 bits (70), Expect = 2.5 Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 13/113 (11%) Frame = -2 Query: 609 EHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLNLDVGXGDDVIERPHAEEVEVDDQS 430 E +PS C R C+ +D R + C +C + + + I RP + E + Q Sbjct: 29 EKQNPSHNKCLRSCNSEKDSYRNQACHARCNLLKVEEEEECEEGQIPRPRPQHPERERQQ 88 Query: 429 NDSCD-------------HKCQHHKVPARKKQCVDECHRREHHHPSRAACERK 310 + + Q H+ +++ E HR+E H + + E + Sbjct: 89 HGEKEEDEGEQPRPFPFPRPRQPHQEEEHEQKEEHEWHRKEEKHGGKGSEEEQ 141
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 30.8 bits (68), Expect = 4.2 Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 7/107 (6%) Frame = -2 Query: 603 HHPSRASCERKCSHWRDPARK-------EQCVQQCMRYGLNLDVGXGDDVIERPHAEEVE 445 H+ +C+R C + K +C Q C YG D +V R ++ ++ Sbjct: 326 HNTCGGTCDRCCPGFNQQPWKPATANSANEC-QSCNCYGHATDCYYDPEVDRRRASQSLD 384 Query: 444 VDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCS 304 Q C CQHH ++C+ +R +H R+C+ Sbjct: 385 GTYQGGGVCID-CQHHTTGVNCERCLPGFYRSPNHPLDSPHVCRRCN 430
>ATS20_HUMAN (P59510) ADAMTS-20 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 20) (ADAM-TS 20) (ADAM-TS20) Length = 1911 Score = 30.4 bits (67), Expect = 5.5 Identities = 21/81 (25%), Positives = 31/81 (38%) Frame = -2 Query: 549 ARKEQCVQQCMRYGLNLDVGXGDDVIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQC 370 A+K +C QC + LD+ I + V+VDD H C P ++ C Sbjct: 912 AKKSECSSQCGQGYRTLDIHCMKYSIHE--GQTVQVDD-------HYCGDQLKPPTQELC 962 Query: 369 VDECHRREHHHPSRAACERKC 307 C H+ + C R C Sbjct: 963 HGNCVFTRWHYSEWSQCSRSC 983
>ACH91_ONCMY (Q8JFN7) Neuronal acetylcholine receptor protein, alpha-9-I subunit| precursor (Nicotinic acetylcholine receptor subunit alpha 9-I) (NACHR alpha 9-I) Length = 572 Score = 30.4 bits (67), Expect = 5.5 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 8/115 (6%) Frame = -2 Query: 615 SREHHHPSRASCERK--CSHWRDPAR------KEQCVQQCMRYGLNLDVGXGDDVIERPH 460 S ++HH +R+ + R+P R +E+ Q G NL G ++ + P+ Sbjct: 437 SNQNHHSNRSQTSKGEGGEEKREPLRHYHHIGREELDYQAPPPG-NLQNGGLNEPL--PY 493 Query: 459 AEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWR 295 +E ++ S +C C HHK Q + C R + RA C K + W+ Sbjct: 494 PKEKHLNPASAPACSCPCPHHKQVVYNIQYIANCFREQ-----RATC-AKGAEWK 542
>VNCS_PAVPN (P18547) Noncapsid protein NS-1 (Nonstructural protein NS1)| Length = 660 Score = 29.6 bits (65), Expect = 9.4 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -3 Query: 416 TTSANIIKFRRGRSSAWTSATDGSIITRAGRLARGSVAI 300 TT A +I +RG ++W ATD + L +G V I Sbjct: 52 TTDAEMINLQRGAETSWDQATDMEWESEIDSLTKGQVLI 90 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,304,138 Number of Sequences: 219361 Number of extensions: 1628110 Number of successful extensions: 5278 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4504 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5251 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7082949625 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
