ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd18c18 |
|---|---|
| Clone Library Name | barley_pub |
>SAHH2_MOUSE (Q80SW1) Putative adenosylhomocysteinase 2 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 2) (AdoHcyase 2) (S-adenosylhomocysteine hydrolase-like 1) (IP3R-binding protein released with inositol 1,4,5-trisphosphate) Length = 530 Score = 32.7 bits (73), Expect = 0.23 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Frame = +2 Query: 188 AATARKEIAGLLWSG-----WWWWCR*CEEADGWQKGGRRWDGPQLTSFLWRR 331 AA A +A W G +WW C DGWQ DG LT +++++ Sbjct: 188 AALAEAGVAVFAWKGESEDDFWWCIDRCVNMDGWQANMILDDGGDLTHWVYKK 240
>SAHH2_HUMAN (O43865) Putative adenosylhomocysteinase 2 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 2) (AdoHcyase 2) (S-adenosylhomocysteine hydrolase-like 1) (DC-expressed AHCY-like molecule) Length = 530 Score = 32.7 bits (73), Expect = 0.23 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Frame = +2 Query: 188 AATARKEIAGLLWSG-----WWWWCR*CEEADGWQKGGRRWDGPQLTSFLWRR 331 AA A +A W G +WW C DGWQ DG LT +++++ Sbjct: 188 AALAEAGVAVFAWKGESEDDFWWCIDRCVNMDGWQANMILDDGGDLTHWVYKK 240
>SYFB_VIBVY (Q7MK40) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 795 Score = 30.0 bits (66), Expect = 1.5 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Frame = -2 Query: 170 FIACVVIENKIQSPPVLASHCSG-ESEEHCCVSFGLSSVRNLDDDIYALCYLCARPK 3 FI C EN ++ P+LA +G SEEH + +L D+ A+ L A K Sbjct: 576 FIPCDTAENGMRQEPMLAGVIAGTRSEEHWNIDTNTVDFFDLKGDVEAILELSANDK 632
>SYFB_VIBVU (Q8DA39) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 795 Score = 30.0 bits (66), Expect = 1.5 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Frame = -2 Query: 170 FIACVVIENKIQSPPVLASHCSG-ESEEHCCVSFGLSSVRNLDDDIYALCYLCARPK 3 FI C EN ++ P+LA +G SEEH + +L D+ A+ L A K Sbjct: 576 FIPCDTAENGMRQEPMLAGVIAGTRSEEHWNIDTNTVDFFDLKGDVEAILELSANDK 632
>WNT5B_EUMSK (P28118) Protein Wnt-5b (Fragment)| Length = 116 Score = 29.6 bits (65), Expect = 1.9 Identities = 19/60 (31%), Positives = 28/60 (46%) Frame = +3 Query: 45 VQVSDTRKPKGNTAVLFTLPAAMRSEDRGRLDFIFNHNTSDERETQTWQRPPGRRSPDYC 224 +Q++D RK + AAMR +G+L+ + N S E + P SPDYC Sbjct: 11 LQLADFRKVGDLLKEKYDSAAAMRISRKGKLELVNNRFNSPTPEDLVYVDP----SPDYC 66
>RPOC_SYMTH (Q67JT4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1179 Score = 29.6 bits (65), Expect = 1.9 Identities = 18/63 (28%), Positives = 31/63 (49%) Frame = +3 Query: 21 ITQSIYIIVQVSDTRKPKGNTAVLFTLPAAMRSEDRGRLDFIFNHNTSDERETQTWQRPP 200 ITQ + + ++ + RKPKG + +E +GR + TS++ E+ T+ P Sbjct: 928 ITQGLPRVEELFEARKPKGQAIIAELDGEVSITEQKGRREITI---TSEDGESVTYSIPY 984 Query: 201 GRR 209 G R Sbjct: 985 GAR 987
>SAHH3_HUMAN (Q96HN2) Putative adenosylhomocysteinase 3 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 3) (AdoHcyase 3) Length = 611 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 5/53 (9%) Frame = +2 Query: 188 AATARKEIAGLLWSG-----WWWWCR*CEEADGWQKGGRRWDGPQLTSFLWRR 331 AA A W G +WW C +GWQ DG LT +++++ Sbjct: 269 AALAESGFPVFAWKGESEDDFWWCIDRCVNVEGWQPNMILDDGGDLTHWIYKK 321
>SAHH3_MOUSE (Q68FL4) Putative adenosylhomocysteinase 3 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 3) (AdoHcyase 3) Length = 613 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 5/53 (9%) Frame = +2 Query: 188 AATARKEIAGLLWSG-----WWWWCR*CEEADGWQKGGRRWDGPQLTSFLWRR 331 AA A W G +WW C +GWQ DG LT +++++ Sbjct: 271 AALAESGFPVFAWKGESEDDFWWCIDRCVNVEGWQPNMILDDGGDLTHWIYKK 323
>SAHH3_PONPY (Q5R889) Putative adenosylhomocysteinase 3 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 3) (AdoHcyase 3) Length = 508 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 5/53 (9%) Frame = +2 Query: 188 AATARKEIAGLLWSG-----WWWWCR*CEEADGWQKGGRRWDGPQLTSFLWRR 331 AA A W G +WW C +GWQ DG LT +++++ Sbjct: 166 AALAESGFPVFAWKGESEDDFWWCIDRCVNVEGWQPNMILDDGGDLTHWIYKK 218
>CSW_DROSI (Q8ISC9) Tyrosine-protein phosphatase corkscrew (EC 3.1.3.48)| (Fragment) Length = 555 Score = 29.3 bits (64), Expect = 2.5 Identities = 20/54 (37%), Positives = 25/54 (46%) Frame = +2 Query: 62 SKAQRKHSSALHSPRCNAKRGPGETGFYFQSQHKR*KRDTNLAATARKEIAGLL 223 SK +R SSA SP + GPG +G S TNL + +AGLL Sbjct: 72 SKHKRSESSASSSPSSGSGSGPGSSGTSGVSSVNGPGTPTNLTSGTAGCLAGLL 125
>WNT5B_PONPY (Q5NVK2) Protein Wnt-5b precursor| Length = 359 Score = 28.5 bits (62), Expect = 4.3 Identities = 18/60 (30%), Positives = 28/60 (46%) Frame = +3 Query: 45 VQVSDTRKPKGNTAVLFTLPAAMRSEDRGRLDFIFNHNTSDERETQTWQRPPGRRSPDYC 224 +Q+++ RK + AAMR +GRL+ + + T E + P SPDYC Sbjct: 233 LQLAEFRKVGDRLKEKYDSAAAMRVTRKGRLELVNSRFTQPTPEDLVYVDP----SPDYC 288
>WNT5B_HUMAN (Q9H1J7) Protein Wnt-5b precursor| Length = 359 Score = 28.5 bits (62), Expect = 4.3 Identities = 18/60 (30%), Positives = 28/60 (46%) Frame = +3 Query: 45 VQVSDTRKPKGNTAVLFTLPAAMRSEDRGRLDFIFNHNTSDERETQTWQRPPGRRSPDYC 224 +Q+++ RK + AAMR +GRL+ + + T E + P SPDYC Sbjct: 233 LQLAEFRKVGDRLKEKYDSAAAMRVTRKGRLELVNSRFTQPTPEDLVYVDP----SPDYC 288
>KCNH7_MOUSE (Q9ER47) Potassium voltage-gated channel subfamily H member 7| (Voltage-gated potassium channel subunit Kv11.3) (Ether-a-go-go-related gene potassium channel 3) (Ether-a-go-go-related protein 3) (Eag-related protein 3) Length = 1195 Score = 28.5 bits (62), Expect = 4.3 Identities = 9/25 (36%), Positives = 15/25 (60%) Frame = +3 Query: 150 NHNTSDERETQTWQRPPGRRSPDYC 224 +H+ D +T +W+R P R P+ C Sbjct: 982 SHSCRDITDTHSWEREPARAQPEEC 1006
>YCW6_YEAST (P25659) Hypothetical 26.8 kDa protein in ERS1-PAT1 intergenic| region Length = 250 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/50 (26%), Positives = 24/50 (48%) Frame = +3 Query: 15 TQITQSIYIIVQVSDTRKPKGNTAVLFTLPAAMRSEDRGRLDFIFNHNTS 164 T+ T+S + ++ D+ KG+T+ L L +D + + H TS Sbjct: 27 TEGTKSCQVSFRIKDSPSEKGSTSFLSELVVIQTLDDNDKYTVVIRHGTS 76
>CAC1B_RAT (Q02294) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2336 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -2 Query: 170 FIACVVIENKIQSPPVLASHCSGESEEHCCVSFGLSS 60 F+A ++I + Q V+ S CS E E C+ F +S+ Sbjct: 1413 FVALIIITFQEQGDKVM-SECSLEKNERACIDFAISA 1448
>CAC1B_RABIT (Q05152) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2339 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -2 Query: 170 FIACVVIENKIQSPPVLASHCSGESEEHCCVSFGLSS 60 F+A ++I + Q V+ S CS E E C+ F +S+ Sbjct: 1416 FVALIIITFQEQGDKVM-SECSLEKNERACIDFAISA 1451
>CAC1B_HUMAN (Q00975) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2339 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -2 Query: 170 FIACVVIENKIQSPPVLASHCSGESEEHCCVSFGLSS 60 F+A ++I + Q V+ S CS E E C+ F +S+ Sbjct: 1411 FVALIIITFQEQGDKVM-SECSLEKNERACIDFAISA 1446
>CAC1B_MOUSE (O55017) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2327 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -2 Query: 170 FIACVVIENKIQSPPVLASHCSGESEEHCCVSFGLSS 60 F+A ++I + Q V+ S CS E E C+ F +S+ Sbjct: 1404 FVALIIITFQEQGDKVM-SECSLEKNERACIDFAISA 1439
>UTX_HUMAN (O15550) Ubiquitously transcribed X chromosome tetratricopeptide| repeat protein (Ubiquitously transcribed TPR protein on the X chromosome) Length = 1401 Score = 27.7 bits (60), Expect = 7.4 Identities = 17/59 (28%), Positives = 25/59 (42%) Frame = +3 Query: 45 VQVSDTRKPKGNTAVLFTLPAAMRSEDRGRLDFIFNHNTSDERETQTWQRPPGRRSPDY 221 + +SD +K K L LPA +R G L H Q + + PG R+P + Sbjct: 1088 IDLSDDKKWKLQLHELTKLPAFVRVVSAGNLLSHVGHTILGMNTVQLYMKVPGSRTPGH 1146
>CSW_DROME (P29349) Tyrosine-protein phosphatase corkscrew (EC 3.1.3.48)| Length = 845 Score = 27.7 bits (60), Expect = 7.4 Identities = 19/54 (35%), Positives = 24/54 (44%) Frame = +2 Query: 62 SKAQRKHSSALHSPRCNAKRGPGETGFYFQSQHKR*KRDTNLAATARKEIAGLL 223 SK +R SSA SP + GPG +G S TNL + + GLL Sbjct: 362 SKHKRSESSASSSPSSGSGSGPGSSGTSGVSSVNGPGTPTNLTSGTAGCLVGLL 415
>CAC1B_DISOM (P56698) Probable voltage-dependent N-type calcium channel alpha-1B| subunit (Voltage-gated calcium channel alpha subunit Cav2.2) (DOE-4) Length = 2326 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -2 Query: 170 FIACVVIENKIQSPPVLASHCSGESEEHCCVSFGLSS 60 F+A ++I + Q V+ S CS E E C+ F +S+ Sbjct: 1408 FVALIIITFQEQGDKVM-SDCSLEKNERACIDFAISA 1443
>UTX_MOUSE (O70546) Ubiquitously transcribed X chromosome tetratricopeptide| repeat protein (Ubiquitously transcribed TPR protein on the X chromosome) (Fragment) Length = 1333 Score = 27.7 bits (60), Expect = 7.4 Identities = 17/59 (28%), Positives = 25/59 (42%) Frame = +3 Query: 45 VQVSDTRKPKGNTAVLFTLPAAMRSEDRGRLDFIFNHNTSDERETQTWQRPPGRRSPDY 221 + +SD +K K L LPA +R G L H Q + + PG R+P + Sbjct: 1020 IDLSDDKKWKLQLHELTKLPAFVRVVSAGNLLSHVGHTILGMNTVQLYMKVPGSRTPGH 1078
>SYFB_VIBPA (Q87Q59) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 801 Score = 27.3 bits (59), Expect = 9.6 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Frame = -2 Query: 170 FIACVVIENKIQSPPVLASHCSG-ESEEHCCVSFGLSSVRNLDDDIYALCYLCARPK 3 FI C EN ++ P+LA +G EEH + +L D+ A+ L A K Sbjct: 576 FIPCESAENGMRQEPMLAGVIAGTRGEEHWDIETNTVDFFDLKGDLEAVLELSANEK 632
>MARH4_HUMAN (Q9P2E8) Membrane-associated RING finger protein 4| (Membrane-associated RING-CH protein IV) (MARCH-IV) (RING finger protein 174) Length = 410 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/34 (41%), Positives = 16/34 (47%) Frame = +2 Query: 209 IAGLLWSGWWWWCR*CEEADGWQKGGRRWDGPQL 310 + GLLW WWWC C GW G PQ+ Sbjct: 5 LCGLLW---WWWC--C--CSGWYCYGLCAPAPQM 31
>UTY_HUMAN (O14607) Ubiquitously transcribed Y chromosome tetratricopeptide| repeat protein (Ubiquitously transcribed TPR protein on the Y chromosome) Length = 1347 Score = 27.3 bits (59), Expect = 9.6 Identities = 17/59 (28%), Positives = 24/59 (40%) Frame = +3 Query: 45 VQVSDTRKPKGNTAVLFTLPAAMRSEDRGRLDFIFNHNTSDERETQTWQRPPGRRSPDY 221 + +SD +K K L LPA R G L H Q + + PG R+P + Sbjct: 1035 IDLSDNKKWKLQLHELTKLPAFARVVSAGNLLTHVGHTILGMNTVQLYMKVPGSRTPGH 1093 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,514,707 Number of Sequences: 219361 Number of extensions: 799022 Number of successful extensions: 2054 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2032 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2054 length of database: 80,573,946 effective HSP length: 89 effective length of database: 61,050,817 effective search space used: 1465219608 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
