>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D)
          Length = 1323

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 28/92 (30%), Positives = 31/92 (33%), Gaps = 11/92 (11%)
 Frame = -2

Query: 624  PLRPAHQGQIRRAPKHPWLHLRDDPDGPLHVLHERDAGWWQ-----PMPRRGKRHGRCPQ 460
            P R A  G  R  P  P    R     P H  H R AG W      P  R  +    CP+
Sbjct: 1208 PRRRARCGCPRPHPHRPRASHRAPAAAPHHHRHRRAAGGWDFPPPAPTSRSLEDLSSCPR 1267

Query: 459  RXXXXXXXSARPTR------AHAPRCARSPRW 382
                     A PTR       HA RC  +  W
Sbjct: 1268 ---------AAPTRRLTGPSRHARRCPHAAHW 1290

>LEU2_AQUAE (O67078) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 432

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 597 IRRAPKHPWLHLRDDPDGPLHVLHERDAGWWQPM 496
           +++  K PW   + DPD   H ++E DA   +P+
Sbjct: 237 VKQRAKRPWKVYQSDPDAEYHSVYEWDASQIEPL 270

>PGCA_CANFA (Q28343) Aggrecan core protein precursor (Cartilage-specific|
            proteoglycan core protein) (CSPCP)
          Length = 2333

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +3

Query: 375  SPAISVTGRTSAHELLSALPTLITTTWSSAGTFHASFPSL 494
            S A  V+G +S  E+ S+LP+    T+  +G FH +FP++
Sbjct: 1698 SGAAEVSGESSGAEVGSSLPS---GTYEGSGNFHPAFPTV 1734


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,766,409
Number of Sequences: 219361
Number of extensions: 1456677
Number of successful extensions: 3937
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3937
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5767334219
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)