ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17n06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009545.1| Triticum aestivum clone wr1.pk148.e12:fis, full i... 238 1e-59
2gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putativ... 82 2e-12
3ref|XM_470137.1| Oryza sativa (japonica cultivar-group), mRNA 72 2e-09
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 72 2e-09
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
6gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic ... 72 2e-09
7emb|X80820.1|ZMABP1F Z.mays ABP1 mRNA for actin-depolymerizing f... 68 3e-08
8gb|AY104025.1| Zea mays PCO095832 mRNA sequence 68 3e-08
9emb|X97725.1|ZMABP2 Z.mays ZmABP2 mRNA for actin depolymerizing ... 66 1e-07
10ref|XM_473455.1| Oryza sativa (japonica cultivar-group), predic... 56 1e-04
11emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4,... 56 1e-04
12dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
13dbj|AK069329.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
14gb|AY112267.1| Zea mays CL5157_2 mRNA sequence 56 1e-04
15ref|XM_478113.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.002
16dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
17dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
18dbj|AK072662.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
19dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.094
20dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.094
21dbj|AK069605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.094
22gb|U58278.1|TAU58278 Triticum aestivum actin-binding protein WCO... 46 0.094
23gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 44 0.37
24gb|AC135102.16| Medicago truncatula clone mth2-8m3, complete seq... 44 0.37
25gb|AY109068.1| Zea mays PCO068743 mRNA sequence 42 1.5
26gb|AC106374.6| Rattus norvegicus 4 BAC CH230-112C2 (Children's H... 40 5.8
27gb|AC090208.4| Homo sapiens chromosome 18, clone RP11-660C14, co... 40 5.8
28gb|AC090340.6| Homo sapiens chromosome 18, clone RP11-714M23, co... 40 5.8
29gb|AC005297.1| Homo sapiens X BAC GS1-466O4 (Roswell Park Cancer... 40 5.8
30gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 5.8
31emb|BX072552.10| Mouse DNA sequence from clone RP23-147I24 on ch... 40 5.8
32emb|BX004970.8| Zebrafish DNA sequence from clone DKEY-9I4, comp... 40 5.8
33emb|AL954307.7| Zebrafish DNA sequence from clone CH211-201C19, ... 40 5.8
34gb|AC004056.1|AC004056 Homo sapiens chromosome 4 clone B227H22 m... 40 5.8
35gb|AC003971.1|AC003971 Human BAC 367D17 from chromosome 18, comp... 40 5.8 
>gb|BT009545.1| Triticum aestivum clone wr1.pk148.e12:fis, full insert mRNA
           sequence
          Length = 2114

 Score =  238 bits (120), Expect = 1e-59
 Identities = 137/143 (95%)
 Strand = Plus / Plus

                                                                       
Query: 281 tagtgtgcgcgctccttgatcacgtccaggctgatttcgctggggtcggtggcctgcatc 340
           ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 288 tagtgcgcgcgctccttgatcacgtcgaggctcatttcgctggggtcggtggcctgcatc 347

                                                                       
Query: 341 tcgatctggatgccgtccanggtcctcttgaacttctcgttggtgcttgcgtacgtcatc 400
           ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 348 tcgatctggatgccgtccagggtcctcttgaacttctcgttggtgctcgcgtacgtcatc 407

                                  
Query: 401 ttgctcctcacctttgcggtgtc 423
           ||||||||||||||||| |||||
Sbjct: 408 ttgctcctcacctttgccgtgtc 430



 Score =  145 bits (73), Expect = 1e-31
 Identities = 76/77 (98%)
 Strand = Plus / Plus

                                                                       
Query: 139 ctttcgacacggtaacaaagccacaaatcatcaagaaagtttcaagagtcacaccgccaa 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ctttcgacacggtaacaaagccacaaatcatcaagaaagtttcaagagtcacaccgccaa 237

                            
Query: 199 atctataattgacataa 215
           ||||||| |||||||||
Sbjct: 238 atctatatttgacataa 254



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 89/104 (85%), Gaps = 6/104 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttaattatttataaccagaacttggaagaa-----cagtgcagcagcataacgcccg 55
           |||||||||||||||||||  ||||||||||||     |||||||||||||||| |||||
Sbjct: 36  catttaattatttataaccgtaacttggaagaacagtgcagtgcagcagcataaggcccg 95

                                                       
Query: 56  gcatataaatgggcagcggaagaaggaacggattacatgataga 99
           |||||| ||||||||   ||| || |||| ||||||||||||||
Sbjct: 96  gcatatcaatgggcacaagaa-aaagaacagattacatgataga 138
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>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier,
              hypothetical protein, putative NAM protein, putative
              cis-zeatin O-glucosyltransferases, putative small nuclear
              ribonucleoprotein, putative cis-zeatin
              O-glucosyltransferase, putative glutathione peroxidase,
              putative copper-exporting ATPases, putative
              serine/threonine dehydratase, and putative actin
              depolymerizing factor genes, complete cds; and hypothetical
              protein gene, partial cds
          Length = 157237

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 100/120 (83%)
 Strand = Plus / Minus

                                                                          
Query: 304    gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccanggt 363
              ||||| ||| || |||||||||||||||||||||| ||| | ||||||||||||||    
Sbjct: 148416 gtccatgctcatctcgctggggtcggtggcctgcagctccacctggatgccgtccagctc 148357

                                                                          
Query: 364    cctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctttgcggtgtc 423
              ||||||||||   || |||| ||| ||||||  |||||||||||||||||| | ||||||
Sbjct: 148356 cctcttgaaccggtccttggagctcgcgtacagcatcttgctcctcaccttcgaggtgtc 148297
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>ref|XM_470137.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 703

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 98/119 (82%)
 Strand = Plus / Minus

                                                                       
Query: 293 tccttgatcacgtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatg 352
           ||||||| |||||| ||| |||  ||||||||||||||||||||||  |||||||||| |
Sbjct: 533 tccttgagcacgtcgagggtgagctcgctggggtcggtggcctgcaggtcgatctggacg 474

                                                                      
Query: 353 ccgtccanggtcctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcac 411
           ||||| |    | ||||||||   ||||||| ||| ||||||  |||||||||||||||
Sbjct: 473 ccgtcgagctccttcttgaacccttcgttggagctcgcgtacaccatcttgctcctcac 415
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 98/119 (82%)
 Strand = Plus / Minus

                                                                            
Query: 293      tccttgatcacgtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatg 352
                ||||||| |||||| ||| |||  ||||||||||||||||||||||  |||||||||| |
Sbjct: 34127301 tccttgagcacgtcgagggtgagctcgctggggtcggtggcctgcaggtcgatctggacg 34127242

                                                                           
Query: 353      ccgtccanggtcctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcac 411
                ||||| |    | ||||||||   ||||||| ||| ||||||  |||||||||||||||
Sbjct: 34127241 ccgtcgagctccttcttgaacccttcgttggagctcgcgtacaccatcttgctcctcac 34127183
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 98/119 (82%)
 Strand = Plus / Minus

                                                                            
Query: 293      tccttgatcacgtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatg 352
                ||||||| |||||| ||| |||  ||||||||||||||||||||||  |||||||||| |
Sbjct: 34217773 tccttgagcacgtcgagggtgagctcgctggggtcggtggcctgcaggtcgatctggacg 34217714

                                                                           
Query: 353      ccgtccanggtcctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcac 411
                ||||| |    | ||||||||   ||||||| ||| ||||||  |||||||||||||||
Sbjct: 34217713 ccgtcgagctccttcttgaacccttcgttggagctcgcgtacaccatcttgctcctcac 34217655
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>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete
             sequence
          Length = 163828

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 98/119 (82%)
 Strand = Plus / Minus

                                                                         
Query: 293   tccttgatcacgtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatg 352
             ||||||| |||||| ||| |||  ||||||||||||||||||||||  |||||||||| |
Sbjct: 91113 tccttgagcacgtcgagggtgagctcgctggggtcggtggcctgcaggtcgatctggacg 91054

                                                                        
Query: 353   ccgtccanggtcctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcac 411
             ||||| |    | ||||||||   ||||||| ||| ||||||  |||||||||||||||
Sbjct: 91053 ccgtcgagctccttcttgaacccttcgttggagctcgcgtacaccatcttgctcctcac 90995
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>emb|X80820.1|ZMABP1F Z.mays ABP1 mRNA for actin-depolymerizing factor
          Length = 589

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 84/101 (83%)
 Strand = Plus / Minus

                                                                       
Query: 308 aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccanggtcctc 367
           ||||| || |||||||||||||||||||| ||||||  ||||||||||||||    ||||
Sbjct: 474 aggctcatctcgctggggtcggtggcctggatctcgcactggatgccgtccagctccctc 415

                                                    
Query: 368 ttgaacttctcgttggtgcttgcgtacgtcatcttgctcct 408
            ||||| | || |||| ||| ||||||  ||||||||||||
Sbjct: 414 ctgaacctgtccttggagctggcgtacagcatcttgctcct 374
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>gb|AY104025.1| Zea mays PCO095832 mRNA sequence
          Length = 894

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 84/101 (83%)
 Strand = Plus / Minus

                                                                       
Query: 308 aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccanggtcctc 367
           ||||| || |||||||||||||||||||| ||||||  ||||||||||||||    ||||
Sbjct: 460 aggctcatctcgctggggtcggtggcctggatctcgcactggatgccgtccagctccctc 401

                                                    
Query: 368 ttgaacttctcgttggtgcttgcgtacgtcatcttgctcct 408
            ||||| | || |||| ||| ||||||  ||||||||||||
Sbjct: 400 ctgaacctgtccttggagctggcgtacagcatcttgctcct 360
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>emb|X97725.1|ZMABP2 Z.mays ZmABP2 mRNA for actin depolymerizing factor
          Length = 546

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 83/100 (83%)
 Strand = Plus / Minus

                                                                       
Query: 308 aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccanggtcctc 367
           ||||| || |||||||||||||||||||| ||||||  ||||||||||||||    ||||
Sbjct: 411 aggctcatctcgctggggtcggtggcctggatctcgcactggatgccgtccagctccctc 352

                                                   
Query: 368 ttgaacttctcgttggtgcttgcgtacgtcatcttgctcc 407
            ||||| | || |||| ||| ||||||  |||||||||||
Sbjct: 351 ctgaacctgtccttggagctggcgtacagcatcttgctcc 312
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>ref|XM_473455.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 420

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 90/111 (81%)
 Strand = Plus / Minus

                                                                       
Query: 304 gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccanggt 363
           ||||| ||| || |||||||| ||||| ||||||| ||| | |||||| |||||||    
Sbjct: 396 gtccatgctcatctcgctgggatcggtcgcctgcagctccacctggatcccgtccagctc 337

                                                              
Query: 364 cctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctt 414
           ||||||||||   || |||| ||| ||||||  ||||||||||||||||||
Sbjct: 336 cctcttgaaccggtccttggagctcgcgtacagcatcttgctcctcacctt 286
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>emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24,
             complete sequence
          Length = 127506

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 90/111 (81%)
 Strand = Plus / Plus

                                                                         
Query: 304   gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccanggt 363
             ||||| ||| || |||||||| ||||| ||||||| ||| | |||||| |||||||    
Sbjct: 61399 gtccatgctcatctcgctgggatcggtcgcctgcagctccacctggatcccgtccagctc 61458

                                                                
Query: 364   cctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctt 414
             ||||||||||   || |||| ||| ||||||  ||||||||||||||||||
Sbjct: 61459 cctcttgaaccggtccttggagctcgcgtacagcatcttgctcctcacctt 61509
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 90/111 (81%)
 Strand = Plus / Plus

                                                                            
Query: 304      gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccanggt 363
                ||||| ||| || |||||||| ||||| ||||||| ||| | |||||| |||||||    
Sbjct: 27792729 gtccatgctcatctcgctgggatcggtcgcctgcagctccacctggatcccgtccagctc 27792788

                                                                   
Query: 364      cctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctt 414
                ||||||||||   || |||| ||| ||||||  ||||||||||||||||||
Sbjct: 27792789 cctcttgaaccggtccttggagctcgcgtacagcatcttgctcctcacctt 27792839
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>dbj|AK069329.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018P16, full
           insert sequence
          Length = 778

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 90/111 (81%)
 Strand = Plus / Minus

                                                                       
Query: 304 gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccanggt 363
           ||||| ||| || |||||||| ||||| ||||||| ||| | |||||| |||||||    
Sbjct: 482 gtccatgctcatctcgctgggatcggtcgcctgcagctccacctggatcccgtccagctc 423

                                                              
Query: 364 cctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctt 414
           ||||||||||   || |||| ||| ||||||  ||||||||||||||||||
Sbjct: 422 cctcttgaaccggtccttggagctcgcgtacagcatcttgctcctcacctt 372
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>gb|AY112267.1| Zea mays CL5157_2 mRNA sequence
          Length = 779

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                   
Query: 304 gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtcca 359
           ||||| ||| || |||||||||||||||||||||| ||| | ||||||||| ||||
Sbjct: 421 gtccatgctcatctcgctggggtcggtggcctgcagctccagctggatgccctcca 476
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>ref|XM_478113.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 884

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 82/101 (81%)
 Strand = Plus / Minus

                                                                       
Query: 308 aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccanggtcctc 367
           ||||| || ||||||||||| |||||||| ||||||  |||||| |||||||    ||||
Sbjct: 463 aggctcatctcgctggggtctgtggcctgaatctcgcactggattccgtccagctccctc 404

                                                    
Query: 368 ttgaacttctcgttggtgcttgcgtacgtcatcttgctcct 408
            ||||| | || |||| ||| ||||||  ||||||||||||
Sbjct: 403 ctgaacctgtccttggagctcgcgtacagcatcttgctcct 363
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 82/101 (81%)
 Strand = Plus / Minus

                                                                            
Query: 308      aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccanggtcctc 367
                ||||| || ||||||||||| |||||||| ||||||  |||||| |||||||    ||||
Sbjct: 17688290 aggctcatctcgctggggtctgtggcctgaatctcgcactggattccgtccagctccctc 17688231

                                                         
Query: 368      ttgaacttctcgttggtgcttgcgtacgtcatcttgctcct 408
                 ||||| | || |||| ||| ||||||  ||||||||||||
Sbjct: 17688230 ctgaacctgtccttggagctcgcgtacagcatcttgctcct 17688190
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>dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1136_F08
          Length = 134988

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 82/101 (81%)
 Strand = Plus / Minus

                                                                         
Query: 308   aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccanggtcctc 367
             ||||| || ||||||||||| |||||||| ||||||  |||||| |||||||    ||||
Sbjct: 92323 aggctcatctcgctggggtctgtggcctgaatctcgcactggattccgtccagctccctc 92264

                                                      
Query: 368   ttgaacttctcgttggtgcttgcgtacgtcatcttgctcct 408
              ||||| | || |||| ||| ||||||  ||||||||||||
Sbjct: 92263 ctgaacctgtccttggagctcgcgtacagcatcttgctcct 92223
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>dbj|AK072662.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134C12, full
           insert sequence
          Length = 884

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 82/101 (81%)
 Strand = Plus / Minus

                                                                       
Query: 308 aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccanggtcctc 367
           ||||| || ||||||||||| |||||||| ||||||  |||||| |||||||    ||||
Sbjct: 463 aggctcatctcgctggggtctgtggcctgaatctcgcactggattccgtccagctccctc 404

                                                    
Query: 368 ttgaacttctcgttggtgcttgcgtacgtcatcttgctcct 408
            ||||| | || |||| ||| ||||||  ||||||||||||
Sbjct: 403 ctgaacctgtccttggagctcgcgtacagcatcttgctcct 363
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 73/90 (81%)
 Strand = Plus / Plus

                                                                            
Query: 323      gggtcggtggcctgcatctcgatctggatgccgtccanggtcctcttgaacttctcgttg 382
                ||||| |||||||||| ||| | ||||||||||||||    ||||||||||   || |||
Sbjct: 26938807 gggtcagtggcctgcagctccacctggatgccgtccagctccctcttgaaccgatccttg 26938866

                                              
Query: 383      gtgcttgcgtacgtcatcttgctcctcacc 412
                | ||| || |||  ||||||||||||||||
Sbjct: 26938867 gagctagcatacagcatcttgctcctcacc 26938896
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>dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1001_D02
          Length = 129081

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 73/90 (81%)
 Strand = Plus / Plus

                                                                          
Query: 323    gggtcggtggcctgcatctcgatctggatgccgtccanggtcctcttgaacttctcgttg 382
              ||||| |||||||||| ||| | ||||||||||||||    ||||||||||   || |||
Sbjct: 117350 gggtcagtggcctgcagctccacctggatgccgtccagctccctcttgaaccgatccttg 117409

                                            
Query: 383    gtgcttgcgtacgtcatcttgctcctcacc 412
              | ||| || |||  ||||||||||||||||
Sbjct: 117410 gagctagcatacagcatcttgctcctcacc 117439
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>dbj|AK069605.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023024H08, full
           insert sequence
          Length = 914

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 73/90 (81%)
 Strand = Plus / Minus

                                                                       
Query: 323 gggtcggtggcctgcatctcgatctggatgccgtccanggtcctcttgaacttctcgttg 382
           ||||| |||||||||| ||| | ||||||||||||||    ||||||||||   || |||
Sbjct: 506 gggtcagtggcctgcagctccacctggatgccgtccagctccctcttgaaccgatccttg 447

                                         
Query: 383 gtgcttgcgtacgtcatcttgctcctcacc 412
           | ||| || |||  ||||||||||||||||
Sbjct: 446 gagctagcatacagcatcttgctcctcacc 417
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>gb|U58278.1|TAU58278 Triticum aestivum actin-binding protein WCOR719 (Wcor719) mRNA,
           complete cds
          Length = 648

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 317 tcgctggggtcggtggcctgcatctcgatctggatgccgtcca 359
           ||||||| ||||||||||||||  |||||||| | ||||||||
Sbjct: 470 tcgctggcgtcggtggcctgcacgtcgatctgcacgccgtcca 428
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 304     gtccaggctgatttcgctggggtcgg 329
               |||| |||||||||||||||||||||
Sbjct: 4866116 gtcccggctgatttcgctggggtcgg 4866091
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>gb|AC135102.16| Medicago truncatula clone mth2-8m3, complete sequence
          Length = 144042

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                   
Query: 364   cctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctttgc 417
             |||||||||| | || ||||||||||| ||  |||||||||| |||||| ||||
Sbjct: 67112 cctcttgaacctttctttggtgcttgcataaatcatcttgcttctcacccttgc 67059
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>gb|AY109068.1| Zea mays PCO068743 mRNA sequence
          Length = 731

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                        
Query: 367 cttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcac 411
           ||||||| |||| |||| ||| |||||  ||||||||||||||||
Sbjct: 460 cttgaacctctccttggagctggcgtagatcatcttgctcctcac 416
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>gb|AC106374.6| Rattus norvegicus 4 BAC CH230-112C2 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 163448

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     catttaattatttataacca 20
             ||||||||||||||||||||
Sbjct: 12305 catttaattatttataacca 12286
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>gb|AC090208.4| Homo sapiens chromosome 18, clone RP11-660C14, complete sequence
          Length = 200979

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 201    ctataattgacataataaat 220
              ||||||||||||||||||||
Sbjct: 200019 ctataattgacataataaat 200000
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>gb|AC090340.6| Homo sapiens chromosome 18, clone RP11-714M23, complete sequence
          Length = 170969

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 201    ctataattgacataataaat 220
              ||||||||||||||||||||
Sbjct: 127777 ctataattgacataataaat 127796
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>gb|AC005297.1| Homo sapiens X BAC GS1-466O4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 177503

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 197    aaatctataattgacataataaat 220
              |||||||||||||||||| |||||
Sbjct: 150960 aaatctataattgacatactaaat 150937
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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 197     aaatctataattgacataataaat 220
               |||||||||||||| |||||||||
Sbjct: 2915373 aaatctataattgaaataataaat 2915396
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>emb|BX072552.10| Mouse DNA sequence from clone RP23-147I24 on chromosome X, complete
             sequence
          Length = 160230

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   caaatctataattgacataa 215
             ||||||||||||||||||||
Sbjct: 31926 caaatctataattgacataa 31945
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>emb|BX004970.8| Zebrafish DNA sequence from clone DKEY-9I4, complete sequence
          Length = 246777

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   ttggatggatggttggtttg 274
             ||||||||||||||||||||
Sbjct: 93043 ttggatggatggttggtttg 93024
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>emb|AL954307.7| Zebrafish DNA sequence from clone CH211-201C19, complete sequence
          Length = 175575

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    tggatggatggttggtttgc 275
              ||||||||||||||||||||
Sbjct: 130295 tggatggatggttggtttgc 130314
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>gb|AC004056.1|AC004056 Homo sapiens chromosome 4 clone B227H22 map 4q25, complete sequence
          Length = 138799

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    ataaccagaacttggaagaa 33
             ||||||||||||||||||||
Sbjct: 79973 ataaccagaacttggaagaa 79992
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>gb|AC003971.1|AC003971 Human BAC 367D17 from chromosome 18, complete sequence
          Length = 87978

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   ctataattgacataataaat 220
             ||||||||||||||||||||
Sbjct: 26898 ctataattgacataataaat 26917


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,617,140
Number of Sequences: 3902068
Number of extensions: 3617140
Number of successful extensions: 69359
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 69142
Number of HSP's gapped (non-prelim): 213
length of query: 432
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 410
effective length of database: 17,147,199,772
effective search space: 7030351906520
effective search space used: 7030351906520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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