>emb|X92402.1|HVALEVDEH H.vulgare mRNA for aminolevulinate dehydratase
          Length = 1815

 Score =  248 bits (125), Expect = 6e-63
 Identities = 198/215 (92%), Gaps = 7/215 (3%)
 Strand = Plus / Minus

                                                                        
Query: 1    ctgatggcatggcggat-att-atgtncttagggtcaa-cgtcaaggcca-canctcaag 56
            ||||||||||||||||| ||| | || ||||||||||| ||||||||||| || ||||||
Sbjct: 1734 ctgatggcatggcggattattcaagtgcttagggtcaaacgtcaaggccaacaactcaag 1675

                                                                        
Query: 57   cccattggctcctcggctgagctctacntctcaaatctttaatcacaggggggtcngacc 116
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||
Sbjct: 1674 cccattggctcctcggctgagctctacatctcaaatctttaatcacaggggggt-tgacc 1616

                                                                        
Query: 117  ggttgatccggtctacgtaccagnacttctacttggcggatcccatgccgcagaggacgg 176
            |||||||||| |||||||||||| |||||||||||||||  |||||||||||||||||||
Sbjct: 1615 ggttgatccgatctacgtaccagtacttctacttggcggtacccatgccgcagaggacgg 1556

                                               
Query: 177  c-ggcggcctggcggncgaagtaggtgaggatgac 210
            | |||||| |||||| |||||||||||||||||||
Sbjct: 1555 ccggcggc-tggcgggcgaagtaggtgaggatgac 1522

>gb|AY106833.1| Zea mays PCO065721 mRNA sequence
          Length = 1186

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 158 cccatgccgcagaggacggcggcggcctggcggncgaagtaggtgaggatgac 210
           ||||||||||| || || |||||||| || ||| |||||||||| ||||||||
Sbjct: 981 cccatgccgcacagcaccgcggcggcgtgacgggcgaagtaggtcaggatgac 929

>gb|AC163622.4| Mus musculus BAC clone RP24-566G6 from chromosome y, complete sequence
          Length = 166756

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 86     ctcaaatctttaatcacaggg 106
              |||||||||||||||||||||
Sbjct: 118632 ctcaaatctttaatcacaggg 118652

>gb|AC140187.3| Mus musculus BAC clone RP24-364N20 from chromosome Y, complete sequence
          Length = 151358

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 86     ctcaaatctttaatcacaggg 106
              |||||||||||||||||||||
Sbjct: 138039 ctcaaatctttaatcacaggg 138019

>emb|AJ310901.1|CPA310901 Cyanophora paradoxa mRNA for ALA dehydratase (hemB gene)
          Length = 1398

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 186  ggcggncgaagtaggtgaggatga 209
            ||||| ||||||||||||||||||
Sbjct: 1231 ggcgggcgaagtaggtgaggatga 1208

>gb|AC151827.5| Mus musculus BAC clone RP24-453P17 from chromosome y, complete sequence
          Length = 166980

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 86    ctcaaatctttaatcacaggg 106
             |||||||||||||||||||||
Sbjct: 21976 ctcaaatctttaatcacaggg 21996

>gb|AC069018.17|AC069018 Mus musculus  BAC MGS3-563C15 (Genome Systems Mouse BAC Library)
             complete sequence
          Length = 157665

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 86    ctcaaatctttaatcacaggg 106
             |||||||||||||||||||||
Sbjct: 41387 ctcaaatctttaatcacaggg 41407

>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 159     ccatgccgcagaggacggcggcgg 182
               |||||||| |||||||||||||||
Sbjct: 3594063 ccatgccggagaggacggcggcgg 3594040

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 45/53 (84%), Gaps = 3/53 (5%)
 Strand = Plus / Minus

                                                                    
Query: 160     catgccgcagaggacggcggcggcctggcggncg---aagtaggtgaggatga 209
               ||||||| |||||| |  ||||||||||||| ||   ||||||||||||||||
Sbjct: 2017147 catgccggagaggaggttggcggcctggcggccggcgaagtaggtgaggatga 2017095

>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0026E05
          Length = 159860

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 45/53 (84%), Gaps = 3/53 (5%)
 Strand = Plus / Minus

                                                                  
Query: 160   catgccgcagaggacggcggcggcctggcggncg---aagtaggtgaggatga 209
             ||||||| |||||| |  ||||||||||||| ||   ||||||||||||||||
Sbjct: 67355 catgccggagaggaggttggcggcctggcggccggcgaagtaggtgaggatga 67303

>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                          
Query: 183     cctggcggncgaagtaggtgaggatga 209
               |||||| | ||||||||||||||||||
Sbjct: 5417755 cctggccgccgaagtaggtgaggatga 5417729

>dbj|AB071808.1| Oryza sativa (japonica cultivar-group) mRNA for transcription
           factor PCF8, partial cds
          Length = 1403

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 172 gacggcggcggcctggcggncga 194
           ||||||||||||||||||| |||
Sbjct: 243 gacggcggcggcctggcggacga 265


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 890,907
Number of Sequences: 3902068
Number of extensions: 890907
Number of successful extensions: 67638
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 67502
Number of HSP's gapped (non-prelim): 133
length of query: 210
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 188
effective length of database: 17,147,199,772
effective search space: 3223673557136
effective search space used: 3223673557136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)