ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18c03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 224 3e-55
2gb|AC132214.1| Genomic sequence for Oryza sativa, Nipponbare str... 224 3e-55
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 224 3e-55
4gb|AC105928.2| Oryza sativa (japonica cultivar-group) chromosome... 224 3e-55
5dbj|AK108941.1| Oryza sativa (japonica cultivar-group) cDNA clon... 224 3e-55
6gb|BT017091.1| Zea mays clone EL01N0361C01.c mRNA sequence 168 2e-38
7dbj|AB108118.1| Phleum pratense DNA, SSR, microsatellite A03-C08 54 6e-04
8emb|AL354916.16| Human DNA sequence from clone RP11-26K22 on chr... 46 0.15
9ref|XM_597200.2| PREDICTED: Bos taurus similar to Tyrosine-prote... 44 0.59
10gb|BT014409.1| Lycopersicon esculentum clone 133715F, mRNA sequence 42 2.3
11dbj|BS000101.1| Pan troglodytes chromosome 22 clone:PTB-115B20, ... 42 2.3
12emb|AL626767.15| Mouse DNA sequence from clone RP23-421C7 on chr... 42 2.3
13dbj|AP001693.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 42 2.3
14gb|AC118223.11| Mus musculus chromosome 7, clone RP23-337G6, com... 42 2.3
15gb|AC113471.9| Mus musculus chromosome 7, clone RP23-268E17, com... 42 2.3
16gb|AC005544.1|AC005544 Homo sapiens chromosome 17, clone hRPK.34... 42 2.3
17dbj|AP001341.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 42 2.3
18gb|AC123658.9| Mus musculus chromosome 15, clone RP23-192C13, co... 40 9.2
19ref|XM_587891.2| PREDICTED: Bos taurus similar to FERM domain co... 40 9.2
20gb|AC161800.8| Mus musculus chromosome 7, clone RP23-340E19, com... 40 9.2
21gb|AC158617.9| Mus musculus 10 BAC RP23-283O2 (Roswell Park Canc... 40 9.2
22gb|AC132249.3| Mus musculus BAC clone RP24-434O21 from chromosom... 40 9.2
23emb|AL513123.10| Human DNA sequence from clone RP11-346D19 on ch... 40 9.2
24emb|CR376763.9| Zebrafish DNA sequence from clone CH211-10L22 in... 40 9.2
25emb|BX248360.1| Corynebacterium diphtheriae gravis NCTC13129, co... 40 9.2
26emb|AL645967.20| Mouse DNA sequence from clone RP23-82J18 on chr... 40 9.2
27gb|AC183387.3| Pan troglodytes BAC clone CH251-113M12 from chrom... 40 9.2
28dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
29gb|AC016955.15| Homo sapiens 3 BAC RP11-21I16 (Roswell Park Canc... 40 9.2
30gb|AC116898.11| Mus musculus chromosome 7, clone RP24-531E8, com... 40 9.2
31dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
32gb|AC115853.8| Mus musculus chromosome 5, clone RP24-273B9, comp... 40 9.2
33gb|AC013622.12| Mus musculus chromosome 5, clone RP23-232H18, co... 40 9.2
34gb|AC163697.3| Gallus gallus BAC clone CH261-186A14 from chromos... 40 9.2
35gb|AC159009.2| Gallus gallus BAC clone CH261-189M12 from chromos... 40 9.2
36gb|AC102003.5| Mus musculus chromosome 7, clone RP24-488I10, com... 40 9.2
37emb|CR376779.18| Zebrafish DNA sequence from clone CH211-236N18 ... 40 9.2
38gb|AC171405.1| Mus musculus BAC clone RP23-103K10 from chromosom... 40 9.2
39gb|AC153573.3| Mus musculus 10 BAC RP23-167K15 (Roswell Park Can... 40 9.2 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  224 bits (113), Expect = 3e-55
 Identities = 200/229 (87%)
 Strand = Plus / Minus

                                                                           
Query: 175     gtatgtttgttcgacaatatgggcagtctgcgcatttccgtacccatggctccaagcaag 234
               ||||||||||||||||||||||||| || || |||||||||||||||||||||| |||| 
Sbjct: 5564103 gtatgtttgttcgacaatatgggcaatcagcacatttccgtacccatggctccaggcaat 5564044

                                                                           
Query: 235     ttgagtggaacctgtgcccgcagcgcagcctgatcagctcgtctccatcgtagaaaccat 294
               | ||||| ||||||||||| || || ||| | || ||||| ||||| || ||||| ||||
Sbjct: 5564043 tcgagtgaaacctgtgcccacaacgtagctttatgagctcatctccgtcatagaatccat 5563984

                                                                           
Query: 295     cgagacaaatcgagcattctggtgatgcctccctgttgtcatctttcttagcctcaaaga 354
               | || |||||||||||||||||||||||||||||||||||||||||  | |||||||| |
Sbjct: 5563983 caaggcaaatcgagcattctggtgatgcctccctgttgtcatctttgcttgcctcaaaaa 5563924

                                                                
Query: 355     tctctatctgcagccgaagaaaggcagacttgctcagtccaggtgatct 403
               |||||||||| |||||||| ||||| | ||||||||| ||| |||||||
Sbjct: 5563923 tctctatctgtagccgaaggaaggccgccttgctcagcccacgtgatct 5563875



 Score =  167 bits (84), Expect = 6e-38
 Identities = 141/160 (88%)
 Strand = Plus / Minus

                                                                           
Query: 516     ccgaagtcgatgatcctaaacacgtccgtagctgaaaactcatccaatgtgatggatggc 575
               |||||||| ||||| |||||||| || ||||||||||| |||||||||||||| ||||||
Sbjct: 5563768 ccgaagtcaatgattctaaacacatcagtagctgaaaattcatccaatgtgatagatggc 5563709

                                                                           
Query: 576     ctggaggtagatgatccgatagaaacacctctcagtctctctagaacacgtgcctgagct 635
               || ||   |||||| || |||||||  |||||||||||||||||||||||||| || |||
Sbjct: 5563708 cttgacacagatgaaccaatagaaatgcctctcagtctctctagaacacgtgcttgtgct 5563649

                                                       
Query: 636     tgcagtacggcaccgggaagccgctcatttgttcggaaca 675
               |||||||| ||||| ||||||||||||||||||| |||||
Sbjct: 5563648 tgcagtacagcaccaggaagccgctcatttgttctgaaca 5563609
to top
>gb|AC132214.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0040M05, from chromosome 3, complete sequence
          Length = 153126

 Score =  224 bits (113), Expect = 3e-55
 Identities = 200/229 (87%)
 Strand = Plus / Minus

                                                                          
Query: 175    gtatgtttgttcgacaatatgggcagtctgcgcatttccgtacccatggctccaagcaag 234
              ||||||||||||||||||||||||| || || |||||||||||||||||||||| |||| 
Sbjct: 107635 gtatgtttgttcgacaatatgggcaatcagcacatttccgtacccatggctccaggcaat 107576

                                                                          
Query: 235    ttgagtggaacctgtgcccgcagcgcagcctgatcagctcgtctccatcgtagaaaccat 294
              | ||||| ||||||||||| || || ||| | || ||||| ||||| || ||||| ||||
Sbjct: 107575 tcgagtgaaacctgtgcccacaacgtagctttatgagctcatctccgtcatagaatccat 107516

                                                                          
Query: 295    cgagacaaatcgagcattctggtgatgcctccctgttgtcatctttcttagcctcaaaga 354
              | || |||||||||||||||||||||||||||||||||||||||||  | |||||||| |
Sbjct: 107515 caaggcaaatcgagcattctggtgatgcctccctgttgtcatctttgcttgcctcaaaaa 107456

                                                               
Query: 355    tctctatctgcagccgaagaaaggcagacttgctcagtccaggtgatct 403
              |||||||||| |||||||| ||||| | ||||||||| ||| |||||||
Sbjct: 107455 tctctatctgtagccgaaggaaggccgccttgctcagcccacgtgatct 107407



 Score =  167 bits (84), Expect = 6e-38
 Identities = 141/160 (88%)
 Strand = Plus / Minus

                                                                          
Query: 516    ccgaagtcgatgatcctaaacacgtccgtagctgaaaactcatccaatgtgatggatggc 575
              |||||||| ||||| |||||||| || ||||||||||| |||||||||||||| ||||||
Sbjct: 107300 ccgaagtcaatgattctaaacacatcagtagctgaaaattcatccaatgtgatagatggc 107241

                                                                          
Query: 576    ctggaggtagatgatccgatagaaacacctctcagtctctctagaacacgtgcctgagct 635
              || ||   |||||| || |||||||  |||||||||||||||||||||||||| || |||
Sbjct: 107240 cttgacacagatgaaccaatagaaatgcctctcagtctctctagaacacgtgcttgtgct 107181

                                                      
Query: 636    tgcagtacggcaccgggaagccgctcatttgttcggaaca 675
              |||||||| ||||| ||||||||||||||||||| |||||
Sbjct: 107180 tgcagtacagcaccaggaagccgctcatttgttctgaaca 107141
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  224 bits (113), Expect = 3e-55
 Identities = 200/229 (87%)
 Strand = Plus / Minus

                                                                           
Query: 175     gtatgtttgttcgacaatatgggcagtctgcgcatttccgtacccatggctccaagcaag 234
               ||||||||||||||||||||||||| || || |||||||||||||||||||||| |||| 
Sbjct: 5563318 gtatgtttgttcgacaatatgggcaatcagcacatttccgtacccatggctccaggcaat 5563259

                                                                           
Query: 235     ttgagtggaacctgtgcccgcagcgcagcctgatcagctcgtctccatcgtagaaaccat 294
               | ||||| ||||||||||| || || ||| | || ||||| ||||| || ||||| ||||
Sbjct: 5563258 tcgagtgaaacctgtgcccacaacgtagctttatgagctcatctccgtcatagaatccat 5563199

                                                                           
Query: 295     cgagacaaatcgagcattctggtgatgcctccctgttgtcatctttcttagcctcaaaga 354
               | || |||||||||||||||||||||||||||||||||||||||||  | |||||||| |
Sbjct: 5563198 caaggcaaatcgagcattctggtgatgcctccctgttgtcatctttgcttgcctcaaaaa 5563139

                                                                
Query: 355     tctctatctgcagccgaagaaaggcagacttgctcagtccaggtgatct 403
               |||||||||| |||||||| ||||| | ||||||||| ||| |||||||
Sbjct: 5563138 tctctatctgtagccgaaggaaggccgccttgctcagcccacgtgatct 5563090



 Score =  167 bits (84), Expect = 6e-38
 Identities = 141/160 (88%)
 Strand = Plus / Minus

                                                                           
Query: 516     ccgaagtcgatgatcctaaacacgtccgtagctgaaaactcatccaatgtgatggatggc 575
               |||||||| ||||| |||||||| || ||||||||||| |||||||||||||| ||||||
Sbjct: 5562983 ccgaagtcaatgattctaaacacatcagtagctgaaaattcatccaatgtgatagatggc 5562924

                                                                           
Query: 576     ctggaggtagatgatccgatagaaacacctctcagtctctctagaacacgtgcctgagct 635
               || ||   |||||| || |||||||  |||||||||||||||||||||||||| || |||
Sbjct: 5562923 cttgacacagatgaaccaatagaaatgcctctcagtctctctagaacacgtgcttgtgct 5562864

                                                       
Query: 636     tgcagtacggcaccgggaagccgctcatttgttcggaaca 675
               |||||||| ||||| ||||||||||||||||||| |||||
Sbjct: 5562863 tgcagtacagcaccaggaagccgctcatttgttctgaaca 5562824
to top
>gb|AC105928.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0014O06, complete sequence
          Length = 168031

 Score =  224 bits (113), Expect = 3e-55
 Identities = 200/229 (87%)
 Strand = Plus / Minus

                                                                         
Query: 175   gtatgtttgttcgacaatatgggcagtctgcgcatttccgtacccatggctccaagcaag 234
             ||||||||||||||||||||||||| || || |||||||||||||||||||||| |||| 
Sbjct: 27802 gtatgtttgttcgacaatatgggcaatcagcacatttccgtacccatggctccaggcaat 27743

                                                                         
Query: 235   ttgagtggaacctgtgcccgcagcgcagcctgatcagctcgtctccatcgtagaaaccat 294
             | ||||| ||||||||||| || || ||| | || ||||| ||||| || ||||| ||||
Sbjct: 27742 tcgagtgaaacctgtgcccacaacgtagctttatgagctcatctccgtcatagaatccat 27683

                                                                         
Query: 295   cgagacaaatcgagcattctggtgatgcctccctgttgtcatctttcttagcctcaaaga 354
             | || |||||||||||||||||||||||||||||||||||||||||  | |||||||| |
Sbjct: 27682 caaggcaaatcgagcattctggtgatgcctccctgttgtcatctttgcttgcctcaaaaa 27623

                                                              
Query: 355   tctctatctgcagccgaagaaaggcagacttgctcagtccaggtgatct 403
             |||||||||| |||||||| ||||| | ||||||||| ||| |||||||
Sbjct: 27622 tctctatctgtagccgaaggaaggccgccttgctcagcccacgtgatct 27574



 Score =  167 bits (84), Expect = 6e-38
 Identities = 141/160 (88%)
 Strand = Plus / Minus

                                                                         
Query: 516   ccgaagtcgatgatcctaaacacgtccgtagctgaaaactcatccaatgtgatggatggc 575
             |||||||| ||||| |||||||| || ||||||||||| |||||||||||||| ||||||
Sbjct: 27467 ccgaagtcaatgattctaaacacatcagtagctgaaaattcatccaatgtgatagatggc 27408

                                                                         
Query: 576   ctggaggtagatgatccgatagaaacacctctcagtctctctagaacacgtgcctgagct 635
             || ||   |||||| || |||||||  |||||||||||||||||||||||||| || |||
Sbjct: 27407 cttgacacagatgaaccaatagaaatgcctctcagtctctctagaacacgtgcttgtgct 27348

                                                     
Query: 636   tgcagtacggcaccgggaagccgctcatttgttcggaaca 675
             |||||||| ||||| ||||||||||||||||||| |||||
Sbjct: 27347 tgcagtacagcaccaggaagccgctcatttgttctgaaca 27308
to top
>dbj|AK108941.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-153-B07, full
           insert sequence
          Length = 1052

 Score =  224 bits (113), Expect = 3e-55
 Identities = 200/229 (87%)
 Strand = Plus / Minus

                                                                       
Query: 175 gtatgtttgttcgacaatatgggcagtctgcgcatttccgtacccatggctccaagcaag 234
           ||||||||||||||||||||||||| || || |||||||||||||||||||||| |||| 
Sbjct: 880 gtatgtttgttcgacaatatgggcaatcagcacatttccgtacccatggctccaggcaat 821

                                                                       
Query: 235 ttgagtggaacctgtgcccgcagcgcagcctgatcagctcgtctccatcgtagaaaccat 294
           | ||||| ||||||||||| || || ||| | || ||||| ||||| || ||||| ||||
Sbjct: 820 tcgagtgaaacctgtgcccacaacgtagctttatgagctcatctccgtcatagaatccat 761

                                                                       
Query: 295 cgagacaaatcgagcattctggtgatgcctccctgttgtcatctttcttagcctcaaaga 354
           | || |||||||||||||||||||||||||||||||||||||||||  | |||||||| |
Sbjct: 760 caaggcaaatcgagcattctggtgatgcctccctgttgtcatctttgcttgcctcaaaaa 701

                                                            
Query: 355 tctctatctgcagccgaagaaaggcagacttgctcagtccaggtgatct 403
           |||||||||| |||||||| ||||| | ||||||||| ||| |||||||
Sbjct: 700 tctctatctgtagccgaaggaaggccgccttgctcagcccacgtgatct 652



 Score =  167 bits (84), Expect = 6e-38
 Identities = 141/160 (88%)
 Strand = Plus / Minus

                                                                       
Query: 516 ccgaagtcgatgatcctaaacacgtccgtagctgaaaactcatccaatgtgatggatggc 575
           |||||||| ||||| |||||||| || ||||||||||| |||||||||||||| ||||||
Sbjct: 545 ccgaagtcaatgattctaaacacatcagtagctgaaaattcatccaatgtgatagatggc 486

                                                                       
Query: 576 ctggaggtagatgatccgatagaaacacctctcagtctctctagaacacgtgcctgagct 635
           || ||   |||||| || |||||||  |||||||||||||||||||||||||| || |||
Sbjct: 485 cttgacacagatgaaccaatagaaatgcctctcagtctctctagaacacgtgcttgtgct 426

                                                   
Query: 636 tgcagtacggcaccgggaagccgctcatttgttcggaaca 675
           |||||||| ||||| ||||||||||||||||||| |||||
Sbjct: 425 tgcagtacagcaccaggaagccgctcatttgttctgaaca 386
to top
>gb|BT017091.1| Zea mays clone EL01N0361C01.c mRNA sequence
          Length = 1120

 Score =  168 bits (85), Expect = 2e-38
 Identities = 169/197 (85%)
 Strand = Plus / Minus

                                                                       
Query: 171 gaccgtatgtttgttcgacaatatgggcagtctgcgcatttccgtacccatggctccaag 230
           ||||||||||| |||||||| || ||||||||||| ||||||||  ||||||||||||||
Sbjct: 723 gaccgtatgttcgttcgacagtacgggcagtctgcacatttccgcgcccatggctccaag 664

                                                                       
Query: 231 caagttgagtggaacctgtgcccgcagcgcagcctgatcagctcgtctccatcgtagaaa 290
           || || ||||||||||||||||| ||||||| ||| |||||||| ||||||||||| || 
Sbjct: 663 catgtcgagtggaacctgtgcccacagcgcaaccttatcagctcatctccatcgtaaaat 604

                                                                       
Query: 291 ccatcgagacaaatcgagcattctggtgatgcctccctgttgtcatctttcttagcctca 350
           ||||| || ||||| || ||||| || |||||||| ||| | ||||||||  ||||||||
Sbjct: 603 ccatcaaggcaaatagaacattcaggcgatgcctctctgctatcatctttgctagcctca 544

                            
Query: 351 aagatctctatctgcag 367
           || ||||| | ||||||
Sbjct: 543 aaaatctcgacctgcag 527



 Score =  111 bits (56), Expect = 3e-21
 Identities = 137/164 (83%)
 Strand = Plus / Minus

                                                                       
Query: 504 gcttctctgcttccgaagtcgatgatcctaaacacgtccgtagctgaaaactcatccaat 563
           ||||| ||| ||| |||||||||||| || || || ||  |||||||||| ||||| |||
Sbjct: 396 gcttccctgtttctgaagtcgatgattctgaatacatcgctagctgaaaattcatctaat 337

                                                                       
Query: 564 gtgatggatggcctggaggtagatgatccgatagaaacacctctcagtctctctagaaca 623
           | ||||||||||||||| | |||||| || | |||||  ||||| |||||||| || |||
Sbjct: 336 gagatggatggcctggacgcagatgaaccaagagaaatgcctctgagtctctccaggaca 277

                                                       
Query: 624 cgtgcctgagcttgcagtacggcaccgggaagccgctcatttgt 667
           || || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 276 cgcgcttgtgcttgcagtacagcaccaggaagccgctcatttgt 233
to top
>dbj|AB108118.1| Phleum pratense DNA, SSR, microsatellite A03-C08
          Length = 659

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 54/62 (87%), Gaps = 1/62 (1%)
 Strand = Plus / Minus

                                                                       
Query: 603 cctctcagtctctctagaacacgtgcctgagcttgcagtacggcaccgggaagccgctca 662
           |||||||| |||| ||| ||||| || || ||||||||||| ||||| ||||||||||||
Sbjct: 648 cctctcagcctct-tagnacacgcgcttgtgcttgcagtacagcaccaggaagccgctca 590

             
Query: 663 tt 664
           ||
Sbjct: 589 tt 588
to top
>emb|AL354916.16| Human DNA sequence from clone RP11-26K22 on chromosome 10 Contains a
             CpG island, complete sequence
          Length = 140148

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 18    aattgaaactaagagatgatgcc 40
             |||||||||||||||||||||||
Sbjct: 73613 aattgaaactaagagatgatgcc 73635
to top
>ref|XM_597200.2| PREDICTED: Bos taurus similar to Tyrosine-protein phosphatase,
           non-receptor type 22 (Hematopoietic cell
           protein-tyrosine phosphatase 70Z-PEP) (Lymphoid
           phosphatase) (LyP) (LOC518992), mRNA
          Length = 2199

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 322 cctccctgttgtcatctttctt 343
           ||||||||||||||||||||||
Sbjct: 73  cctccctgttgtcatctttctt 94
to top
>gb|BT014409.1| Lycopersicon esculentum clone 133715F, mRNA sequence
          Length = 1312

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 185 tcgacaatatgggcagtctgcgcatttccgtacccatggctccaagcaa 233
           ||||||||||||||||||  | ||  | ||||||||||| |||||||||
Sbjct: 931 tcgacaatatgggcagtccccacaagttcgtacccatggttccaagcaa 883
to top
>dbj|BS000101.1| Pan troglodytes chromosome 22 clone:PTB-115B20, map 22, complete
              sequences
          Length = 191901

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 418    tgatgagtggattctctaagttctc 442
              |||||| ||||||||||||||||||
Sbjct: 182925 tgatgactggattctctaagttctc 182901
to top
>emb|AL626767.15| Mouse DNA sequence from clone RP23-421C7 on chromosome 4, complete
             sequence
          Length = 199694

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 472   atgatgagctaggccaattggtctc 496
             ||||||| |||||||||||||||||
Sbjct: 49576 atgatgacctaggccaattggtctc 49600
to top
>dbj|AP001693.1| Homo sapiens genomic DNA, chromosome 21q, section 37/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 418   tgatgagtggattctctaagttctc 442
             |||||| ||||||||||||||||||
Sbjct: 31866 tgatgactggattctctaagttctc 31842
to top
>gb|AC118223.11| Mus musculus chromosome 7, clone RP23-337G6, complete sequence
          Length = 196119

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 332   gtcatctttcttagcctcaaa 352
             |||||||||||||||||||||
Sbjct: 17227 gtcatctttcttagcctcaaa 17207
to top
>gb|AC113471.9| Mus musculus chromosome 7, clone RP23-268E17, complete sequence
          Length = 200878

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 332    gtcatctttcttagcctcaaa 352
              |||||||||||||||||||||
Sbjct: 185501 gtcatctttcttagcctcaaa 185481
to top
>gb|AC005544.1|AC005544 Homo sapiens chromosome 17, clone hRPK.349_A_8, complete sequence
          Length = 169045

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 79    gattacaacaacacatcatac 99
             |||||||||||||||||||||
Sbjct: 63995 gattacaacaacacatcatac 63975
to top
>dbj|AP001341.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B266G18,
             LL56-APP region, complete sequence
          Length = 122318

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 418   tgatgagtggattctctaagttctc 442
             |||||| ||||||||||||||||||
Sbjct: 90609 tgatgactggattctctaagttctc 90585
to top
>gb|AC123658.9| Mus musculus chromosome 15, clone RP23-192C13, complete sequence
          Length = 211158

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 335    atctttcttagcctcaaaga 354
              ||||||||||||||||||||
Sbjct: 101105 atctttcttagcctcaaaga 101124
to top
>ref|XM_587891.2| PREDICTED: Bos taurus similar to FERM domain containing 4A
            (LOC510714), mRNA
          Length = 4094

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 547  ctgaaaactcatccaatgtgatgg 570
            ||||||||||| ||||||||||||
Sbjct: 3838 ctgaaaactcacccaatgtgatgg 3861
to top
>gb|AC161800.8| Mus musculus chromosome 7, clone RP23-340E19, complete sequence
          Length = 201173

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 53    gtgtaacagatatgcacaaaacag 76
             ||||| ||||||||||||||||||
Sbjct: 68025 gtgtagcagatatgcacaaaacag 68048
to top
>gb|AC158617.9| Mus musculus 10 BAC RP23-283O2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 240410

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   ttctggtgatgcctccctgt 330
             ||||||||||||||||||||
Sbjct: 55489 ttctggtgatgcctccctgt 55470
to top
>gb|AC132249.3| Mus musculus BAC clone RP24-434O21 from chromosome 6, complete sequence
          Length = 180332

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    taacagatatgcacaaaaca 75
             ||||||||||||||||||||
Sbjct: 91775 taacagatatgcacaaaaca 91756
to top
>emb|AL513123.10| Human DNA sequence from clone RP11-346D19 on chromosome 6, complete
             sequence
          Length = 70339

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 571   atggcctggaggtagatgat 590
             ||||||||||||||||||||
Sbjct: 14437 atggcctggaggtagatgat 14418
to top
>emb|CR376763.9| Zebrafish DNA sequence from clone CH211-10L22 in linkage group 7,
             complete sequence
          Length = 31954

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 57    aacagatatgcacaaaacagtgga 80
             |||||||||| |||||||||||||
Sbjct: 30382 aacagatatgaacaaaacagtgga 30359
to top
>emb|BX248360.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment
              7/8
          Length = 349659

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 251    cccgcagcgcagcctgatca 270
              ||||||||||||||||||||
Sbjct: 335119 cccgcagcgcagcctgatca 335138
to top
>emb|AL645967.20| Mouse DNA sequence from clone RP23-82J18 on chromosome 11 Contains a
              novel pseudogene, complete sequence
          Length = 166549

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 562    atgtgatggatggcctggag 581
              ||||||||||||||||||||
Sbjct: 126447 atgtgatggatggcctggag 126428
to top
>gb|AC183387.3| Pan troglodytes BAC clone CH251-113M12 from chromosome unknown, complete
              sequence
          Length = 175955

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 318    gatgcctccctgttgtcatc 337
              ||||||||||||||||||||
Sbjct: 120096 gatgcctccctgttgtcatc 120077
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 531      ctaaacacgtccgtagctga 550
                ||||||||||||||||||||
Sbjct: 20513838 ctaaacacgtccgtagctga 20513857
to top
>gb|AC016955.15| Homo sapiens 3 BAC RP11-21I16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 169343

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    aaaacagtggattacaacaa 89
             ||||||||||||||||||||
Sbjct: 71746 aaaacagtggattacaacaa 71765
to top
>gb|AC116898.11| Mus musculus chromosome 7, clone RP24-531E8, complete sequence
          Length = 148793

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 214   gtacccatggctccaagcaa 233
             ||||||||||||||||||||
Sbjct: 62523 gtacccatggctccaagcaa 62542
to top
>dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1254_E07
          Length = 124028

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 531   ctaaacacgtccgtagctga 550
             ||||||||||||||||||||
Sbjct: 31485 ctaaacacgtccgtagctga 31504
to top
>gb|AC115853.8| Mus musculus chromosome 5, clone RP24-273B9, complete sequence
          Length = 188562

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 389   cagtccaggtgatctgttgg 408
             ||||||||||||||||||||
Sbjct: 16890 cagtccaggtgatctgttgg 16909
to top
>gb|AC013622.12| Mus musculus chromosome 5, clone RP23-232H18, complete sequence
          Length = 240821

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 389    cagtccaggtgatctgttgg 408
              ||||||||||||||||||||
Sbjct: 223466 cagtccaggtgatctgttgg 223485
to top
>gb|AC163697.3| Gallus gallus BAC clone CH261-186A14 from chromosome unknown, complete
             sequence
          Length = 224517

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    atatgcacaaaacagtggat 81
             ||||||||||||||||||||
Sbjct: 91735 atatgcacaaaacagtggat 91754
to top
>gb|AC159009.2| Gallus gallus BAC clone CH261-189M12 from chromosome unknown, complete
              sequence
          Length = 211745

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 62     atatgcacaaaacagtggat 81
              ||||||||||||||||||||
Sbjct: 176620 atatgcacaaaacagtggat 176639
to top
>gb|AC102003.5| Mus musculus chromosome 7, clone RP24-488I10, complete sequence
          Length = 150428

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 53    gtgtaacagatatgcacaaaacag 76
             ||||| ||||||||||||||||||
Sbjct: 59442 gtgtagcagatatgcacaaaacag 59419
to top
>emb|CR376779.18| Zebrafish DNA sequence from clone CH211-236N18 in linkage group 7,
           complete sequence
          Length = 177160

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 57  aacagatatgcacaaaacagtgga 80
           |||||||||| |||||||||||||
Sbjct: 428 aacagatatgaacaaaacagtgga 405
to top
>gb|AC171405.1| Mus musculus BAC clone RP23-103K10 from chromosome 17, complete
             sequence
          Length = 181342

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    aaattgaaactaagagatga 36
             ||||||||||||||||||||
Sbjct: 21238 aaattgaaactaagagatga 21257
to top
>gb|AC153573.3| Mus musculus 10 BAC RP23-167K15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 200011

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 311    ttctggtgatgcctccctgt 330
              ||||||||||||||||||||
Sbjct: 175589 ttctggtgatgcctccctgt 175570


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,722,170
Number of Sequences: 3902068
Number of extensions: 4722170
Number of successful extensions: 77603
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 77459
Number of HSP's gapped (non-prelim): 144
length of query: 675
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 652
effective length of database: 17,143,297,704
effective search space: 11177430103008
effective search space used: 11177430103008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top