>ALMS1_MOUSE (Q8K4E0) Alstrom syndrome protein 1 homolog|
          Length = 3251

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 270  SLLFLVPKCPVCLHNKEELLPDERTVF 350
            SL+FL PK P+ L   +  LPD +T+F
Sbjct: 2246 SLVFLGPKSPLDLQVAQSSLPDSKTIF 2272

>S45A1_RAT (Q8K4S3) Proton-associated sugar transporter A (PAST-A) (Solute|
           carrier family 45 member 1)
          Length = 751

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 46  NLCLPHLAGWLSFPCQNLSYT 108
           NLC+ H  GWLSF    L YT
Sbjct: 528 NLCVNHFLGWLSFEGMLLFYT 548

>S45A1_MOUSE (Q8BIV7) Proton-associated sugar transporter A (PAST-A) (Solute|
           carrier family 45 member 1) (Deleted in neuroblastoma 5
           protein homolog) (DNb-5 homolog)
          Length = 751

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 46  NLCLPHLAGWLSFPCQNLSYT 108
           NLC+ H  GWLSF    L YT
Sbjct: 528 NLCVNHFLGWLSFEGMLLFYT 548

>PDR15_YEAST (Q04182) ATP-dependent permease PDR15|
          Length = 1529

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -3

Query: 239  KLTDTGQMSQPAFLSLCSPCGFEVLSCWVILFGENS*T*WRHAQVY 102
            KL  TG +S P+   +CS C     + ++  F  +    WR+  ++
Sbjct: 1451 KLAGTGYLSDPSATDICSFCAVSTTNAFLATFSSHYYRRWRNYGIF 1496

>POLN_LORDV (P54634) Non-structural polyprotein [Contains: p48; Helicase|
           (2C-like protein) (P2C); 3A-like protein; Viral
           genome-linked protein (VPg); Thiol protease P3C (EC
           3.4.22.-) (3C-like protease) (3C-pro); RNA-directed RNA
           polymerase (EC 2.7.7.48)]
          Length = 1699

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = +1

Query: 145 KRMTQQDKTSKPQGEHSERKAGCDICP 225
           KRM  QD  SKPQ E +E  A  D CP
Sbjct: 831 KRMNIQDLWSKPQVEDTEDTANKDGCP 857

>SYV_RHIME (Q92Q37) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 947

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
 Frame = -2

Query: 336 RPGEAPPCCEDILDTWGR------ETIATPRNKA*ETEKIDRYWAD--VTTGLPLTVFAL 181
           +PGE     ED+LDTW         T+  P+    ET ++D+Y+    + TG  +  F  
Sbjct: 498 KPGEILTRDEDVLDTWFSSALWPFSTLGWPK----ETPELDKYYQTDVLVTGFDIIFF-- 551

Query: 180 WF*SFILLGHSF 145
           W    +++G  F
Sbjct: 552 WVARMMMMGLHF 563

>SLAP2_HUMAN (Q9H6Q3) Src-like-adapter 2 (Src-like adapter protein 2) (SLAP-2)|
           (Modulator of antigen receptor signaling) (MARS)
          Length = 260

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 77  SQPAKWGRQRFHYVSCCTKGWSXIS 3
           S+PA W R R + + C   GW  IS
Sbjct: 136 SRPASWDRIRHYRIHCLDNGWLYIS 160

>KHSE_THEMA (Q9WZ15) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)|
          Length = 281

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 270 SLLFLVPKCPVCLHNKEELLPDE 338
           SL FLVP  PVC +   ++LP++
Sbjct: 157 SLTFLVPNFPVCTNEMRKILPEK 179

>PTGIS_BOVIN (Q29626) Prostacyclin synthase (EC 5.3.99.4) (Prostaglandin I2|
           synthase)
          Length = 500

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -3

Query: 368 SQIVDHEDGPLVREKLLLVVKTYWTLGDEKQ*RRPEIKHEKLRKLTD 228
           S++  H     + E++  V   ++  GDEK   +P + H++L+ LTD
Sbjct: 92  SRLDFHAYAVFLMERIFDVQLPHYNPGDEKSKMKPTLLHKELQALTD 138

>YNIA_ECOLI (P77739) Hypothetical protein yniA|
          Length = 286

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 118 DMPKYMTDFDMG-RTASQPNGADRDFIMFLAVQRVG 14
           D P++  DFD    T  QPN   R +  F A QR+G
Sbjct: 118 DQPQFGLDFDNALSTTPQPNTWQRRWSTFFAEQRIG 153

>YNIA_ECO57 (P58065) Hypothetical protein yniA|
          Length = 286

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 118 DMPKYMTDFDMG-RTASQPNGADRDFIMFLAVQRVG 14
           D P++  DFD    T  QPN   R +  F A QR+G
Sbjct: 118 DQPQFGLDFDNSLSTTPQPNTWQRRWSTFFAEQRIG 153

>SYV_THEMA (Q9X2D7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 865

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
 Frame = -2

Query: 309 EDILDTWGRE------TIATPRNKA*ETEKIDRYWAD--VTTGLPLTVFALWF*SFILLG 154
           ED+LDTW         T+  P     ETE + RY+    + TG  +  F  W    I++G
Sbjct: 445 EDVLDTWFSSALWPFSTLGWPE----ETEDLKRYYPTDLLVTGFDIIFF--WVARMIMMG 498

Query: 153 HSF 145
           + F
Sbjct: 499 YEF 501

>YG51_YEAST (P50089) Hypothetical 89.2 kDa protein in YHB1-PFK1 intergenic|
           region
          Length = 785

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 190 HSERKAGCDICPVSVNFLSFSCFISGRRYCFSS 288
           +++ K  C      V+    SC+ISGRRY +SS
Sbjct: 320 NTKEKLNCKDKDDDVDLRVVSCYISGRRYTWSS 352

>FA61B_XENTR (Q566L7) Protein FAM61B homolog|
          Length = 382

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/41 (46%), Positives = 24/41 (58%)
 Frame = +2

Query: 218 SAQYLSIFSVSHALFRGVAIVSRPQVSSMSSQQGGASPGRA 340
           SA Y S  SV ++ FRG+   S+   SS+ SQQ  AS G A
Sbjct: 103 SASYQS--SVPYSPFRGMPTYSQLAASSLLSQQYAASLGLA 141

>PTN13_MOUSE (Q64512) Tyrosine-protein phosphatase non-receptor type 13 (EC|
            3.1.3.48) (Protein tyrosine phosphatase PTP-BL)
            (Protein-tyrosine phosphatase RIP) (protein tyrosine
            phosphatase DPZPTP) (PTP36)
          Length = 2453

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
 Frame = +1

Query: 118  LHYV*LFSPKRMTQQDKT-----SKPQGEHSERKAGCDICPVSVNFLSFSCFISGRRYCF 282
            +HYV   S + MT +D       S P       + GC + P +   +S   F        
Sbjct: 1907 IHYVNGVSTQGMTLEDANRALDLSLPSVVLKVTRDGCPVVPTTRAAISAPRFTKANGLTS 1966

Query: 283  SSPSVQYVFTTRRSFSRTSG 342
              PS Q     + SFS+ +G
Sbjct: 1967 MEPSGQPALMPKNSFSKVNG 1986

>CLD9_HUMAN (O95484) Claudin-9|
          Length = 217

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 329 PGRADRLRGPRSGYSIXSR 385
           P + +R RGPR GYSI SR
Sbjct: 187 PPQVERPRGPRLGYSIPSR 205


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,546,591
Number of Sequences: 219361
Number of extensions: 1277934
Number of successful extensions: 3572
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3572
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)