Clone Name | rbasd17m24 |
---|---|
Clone Library Name | barley_pub |
>gb|AY106150.1| Zea mays PCO099943 mRNA sequence Length = 1572 Score = 157 bits (79), Expect = 3e-35 Identities = 90/94 (95%) Strand = Plus / Minus Query: 295 gtccagtatgtcttcacaacaaggaggagcttctcccggacgagcggaccgtcttcgtgg 354 |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct: 1248 gtccagtatgtcttcacagcaaggaggagcttctcccggacgagcggaccatcttcgtga 1189 Query: 355 tccacgatctggctattccatctnatcccgtccg 388 ||||||||||||||||||||||| |||||||||| Sbjct: 1188 tccacgatctggctattccatctcatcccgtccg 1155
>ref|XM_473556.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1941 Score = 123 bits (62), Expect = 4e-25 Identities = 91/101 (90%) Strand = Plus / Minus Query: 286 tccccaagtgtccagtatgtcttcacaacaaggaggagcttctcccggacgagcggaccg 345 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct: 1928 tccccgagtgtccagtatgtctttacaacaaggaggagcttctcccggacgagcgggcca 1869 Query: 346 tcttcgtggtccacgatctggctattccatctnatcccgtc 386 |||||||| || ||||| ||||| |||||||| || ||||| Sbjct: 1868 tcttcgtgatcaacgatttggctgttccatctcataccgtc 1828
>emb|AL607001.4|OSJN00128 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088I22, complete sequence Length = 164572 Score = 123 bits (62), Expect = 4e-25 Identities = 91/101 (90%) Strand = Plus / Minus Query: 286 tccccaagtgtccagtatgtcttcacaacaaggaggagcttctcccggacgagcggaccg 345 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct: 93483 tccccgagtgtccagtatgtctttacaacaaggaggagcttctcccggacgagcgggcca 93424 Query: 346 tcttcgtggtccacgatctggctattccatctnatcccgtc 386 |||||||| || ||||| ||||| |||||||| || ||||| Sbjct: 93423 tcttcgtgatcaacgatttggctgttccatctcataccgtc 93383
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 123 bits (62), Expect = 4e-25 Identities = 91/101 (90%) Strand = Plus / Plus Query: 286 tccccaagtgtccagtatgtcttcacaacaaggaggagcttctcccggacgagcggaccg 345 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct: 28697475 tccccgagtgtccagtatgtctttacaacaaggaggagcttctcccggacgagcgggcca 28697534 Query: 346 tcttcgtggtccacgatctggctattccatctnatcccgtc 386 |||||||| || ||||| ||||| |||||||| || ||||| Sbjct: 28697535 tcttcgtgatcaacgatttggctgttccatctcataccgtc 28697575
>dbj|AK099906.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116A04, full insert sequence Length = 2060 Score = 123 bits (62), Expect = 4e-25 Identities = 91/101 (90%) Strand = Plus / Minus Query: 286 tccccaagtgtccagtatgtcttcacaacaaggaggagcttctcccggacgagcggaccg 345 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct: 2014 tccccgagtgtccagtatgtctttacaacaaggaggagcttctcccggacgagcgggcca 1955 Query: 346 tcttcgtggtccacgatctggctattccatctnatcccgtc 386 |||||||| || ||||| ||||| |||||||| || ||||| Sbjct: 1954 tcttcgtgatcaacgatttggctgttccatctcataccgtc 1914
>dbj|AK069684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031N01, full insert sequence Length = 3063 Score = 123 bits (62), Expect = 4e-25 Identities = 91/101 (90%) Strand = Plus / Minus Query: 286 tccccaagtgtccagtatgtcttcacaacaaggaggagcttctcccggacgagcggaccg 345 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct: 2014 tccccgagtgtccagtatgtctttacaacaaggaggagcttctcccggacgagcgggcca 1955 Query: 346 tcttcgtggtccacgatctggctattccatctnatcccgtc 386 |||||||| || ||||| ||||| |||||||| || ||||| Sbjct: 1954 tcttcgtgatcaacgatttggctgttccatctcataccgtc 1914
>gb|AY111036.1| Zea mays CL1582_4 mRNA sequence Length = 781 Score = 93.7 bits (47), Expect = 4e-16 Identities = 82/94 (87%) Strand = Plus / Plus Query: 295 gtccagtatgtcttcacaacaaggaggagcttctcccggacgagcggaccgtcttcgtgg 354 |||||||| ||||| || || ||||||| |||||||| ||||||||| |||||||||||| Sbjct: 408 gtccagtacgtcttgacgaccaggaggatcttctccctgacgagcgggccgtcttcgtgg 467 Query: 355 tccacgatctggctattccatctnatcccgtccg 388 || ||||||||||| | ||| || |||||||||| Sbjct: 468 tcgacgatctggctctcccacctcatcccgtccg 501
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 87.7 bits (44), Expect = 2e-14 Identities = 82/95 (86%) Strand = Plus / Plus Query: 294 tgtccagtatgtcttcacaacaaggaggagcttctcccggacgagcggaccgtcttcgtg 353 ||||||||| ||||| || || ||||||| |||||||||||||||||| || ||||| || Sbjct: 27549739 tgtccagtacgtcttgacgaccaggaggatcttctcccggacgagcgggccatcttcatg 27549798 Query: 354 gtccacgatctggctattccatctnatcccgtccg 388 ||| ||||||||||| | ||| || |||||||||| Sbjct: 27549799 gtcgacgatctggctgtcccacctcatcccgtccg 27549833
>dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0135D07 Length = 170587 Score = 87.7 bits (44), Expect = 2e-14 Identities = 82/95 (86%) Strand = Plus / Plus Query: 294 tgtccagtatgtcttcacaacaaggaggagcttctcccggacgagcggaccgtcttcgtg 353 ||||||||| ||||| || || ||||||| |||||||||||||||||| || ||||| || Sbjct: 29408 tgtccagtacgtcttgacgaccaggaggatcttctcccggacgagcgggccatcttcatg 29467 Query: 354 gtccacgatctggctattccatctnatcccgtccg 388 ||| ||||||||||| | ||| || |||||||||| Sbjct: 29468 gtcgacgatctggctgtcccacctcatcccgtccg 29502
>dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0657H12 Length = 142688 Score = 87.7 bits (44), Expect = 2e-14 Identities = 82/95 (86%) Strand = Plus / Plus Query: 294 tgtccagtatgtcttcacaacaaggaggagcttctcccggacgagcggaccgtcttcgtg 353 ||||||||| ||||| || || ||||||| |||||||||||||||||| || ||||| || Sbjct: 141461 tgtccagtacgtcttgacgaccaggaggatcttctcccggacgagcgggccatcttcatg 141520 Query: 354 gtccacgatctggctattccatctnatcccgtccg 388 ||| ||||||||||| | ||| || |||||||||| Sbjct: 141521 gtcgacgatctggctgtcccacctcatcccgtccg 141555
>dbj|AK065315.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P05, full insert sequence Length = 2289 Score = 87.7 bits (44), Expect = 2e-14 Identities = 82/95 (86%) Strand = Plus / Minus Query: 294 tgtccagtatgtcttcacaacaaggaggagcttctcccggacgagcggaccgtcttcgtg 353 ||||||||| ||||| || || ||||||| |||||||||||||||||| || ||||| || Sbjct: 2059 tgtccagtacgtcttgacgaccaggaggatcttctcccggacgagcgggccatcttcatg 2000 Query: 354 gtccacgatctggctattccatctnatcccgtccg 388 ||| ||||||||||| | ||| || |||||||||| Sbjct: 1999 gtcgacgatctggctgtcccacctcatcccgtccg 1965
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 46.1 bits (23), Expect = 0.084 Identities = 26/27 (96%) Strand = Plus / Minus Query: 27 acagcaagaaacataatgaaatctctg 53 ||||||| ||||||||||||||||||| Sbjct: 2983165 acagcaaaaaacataatgaaatctctg 2983139
>gb|AC116644.4| Homo sapiens BAC clone RP11-678J5 from 4, complete sequence Length = 75455 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 caagaaacataatgaaatctc 51 ||||||||||||||||||||| Sbjct: 34152 caagaaacataatgaaatctc 34132
>gb|AC093607.3| Homo sapiens BAC clone RP11-654J13 from 4, complete sequence Length = 143993 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 tcaaaatctgtcatatacttg 110 ||||||||||||||||||||| Sbjct: 43619 tcaaaatctgtcatatacttg 43599
>emb|BX678774.7| Mouse DNA sequence from clone RP23-193A4 on chromosome 2, complete sequence Length = 123748 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 tgtgacatctgcccagtatct 231 ||||||||||||||||||||| Sbjct: 26271 tgtgacatctgcccagtatct 26291
>emb|AL672229.12| Mouse DNA sequence from clone RP23-335A6 on chromosome 17, complete sequence Length = 187977 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 64 ttggctggctggctgtccttcccat 88 |||||||||||||||||||| |||| Sbjct: 48113 ttggctggctggctgtcctttccat 48089
>gb|AC168217.2| Mus musculus BAC clone RP24-498P8 from chromosome 9, complete sequence Length = 171426 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ttggctggctggctgtcctt 83 |||||||||||||||||||| Sbjct: 154651 ttggctggctggctgtcctt 154632
>ref|XM_610350.2| PREDICTED: Bos taurus similar to X-linked neuroligin 4 (LOC531847), mRNA Length = 3038 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 ccgtcttcgtggtccacgat 362 |||||||||||||||||||| Sbjct: 1022 ccgtcttcgtggtccacgat 1003
>emb|CT009492.5| M.truncatula DNA sequence from clone MTH2-93A21 on chromosome 3, complete sequence Length = 122557 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 agcaagataaaacttcaaaa 177 |||||||||||||||||||| Sbjct: 66039 agcaagataaaacttcaaaa 66020
>gb|AC147158.3| Pan troglodytes BAC clone CH251-137M10 from Y, complete sequence Length = 167138 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 aacataatgaaatctctgtc 55 |||||||||||||||||||| Sbjct: 47832 aacataatgaaatctctgtc 47813
>gb|AC142354.3| Pan troglodytes BAC clone RP43-21M11 from Y, complete sequence Length = 163480 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 aacataatgaaatctctgtc 55 |||||||||||||||||||| Sbjct: 155852 aacataatgaaatctctgtc 155833
>dbj|BS000641.4| Pan troglodytes chromosome Y clone: PTB-094I22, complete sequence Length = 190308 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 aacataatgaaatctctgtc 55 |||||||||||||||||||| Sbjct: 98334 aacataatgaaatctctgtc 98353
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 aacataatgaaatctctgtc 55 |||||||||||||||||||| Sbjct: 17308124 aacataatgaaatctctgtc 17308105
>dbj|BS000147.1| Pan troglodytes chromosome 22 clone:PTB-072G02, map 22, complete sequences Length = 179346 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 tcaattttctcagtttctca 252 |||||||||||||||||||| Sbjct: 128801 tcaattttctcagtttctca 128782
>dbj|BS000073.1| Pan troglodytes chromosome 22 clone:RP43-040P11, map 22, complete sequences Length = 148593 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 tcaattttctcagtttctca 252 |||||||||||||||||||| Sbjct: 21631 tcaattttctcagtttctca 21612
>dbj|BS000072.1| Pan troglodytes chromosome 22 clone:RP43-156P08, map 22, complete sequences Length = 155118 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 tcaattttctcagtttctca 252 |||||||||||||||||||| Sbjct: 112865 tcaattttctcagtttctca 112846
>gb|AF241725.1|AF241725 Homo sapiens 21 map 21q21 clone B780G18, complete sequence Length = 172663 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 tcaattttctcagtttctca 252 |||||||||||||||||||| Sbjct: 124082 tcaattttctcagtttctca 124063
>dbj|BS000573.1| Pan troglodytes chromosome Y clone:RP43-021M11, complete sequences Length = 163477 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 aacataatgaaatctctgtc 55 |||||||||||||||||||| Sbjct: 7629 aacataatgaaatctctgtc 7648
>gb|AF236874.1|AF236874 Homo sapiens chromosome 21 map 21q21, BAC B242B02, complete sequence Length = 157270 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 tcaattttctcagtttctca 252 |||||||||||||||||||| Sbjct: 45885 tcaattttctcagtttctca 45866
>emb|AL163227.2|HS21C027 Homo sapiens chromosome 21 segment HS21C027 Length = 340000 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 tcaattttctcagtttctca 252 |||||||||||||||||||| Sbjct: 191986 tcaattttctcagtttctca 191967
>gb|AC137678.11| Mus musculus chromosome 9, clone RP24-484G16, complete sequence Length = 172337 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 ttggctggctggctgtcctt 83 |||||||||||||||||||| Sbjct: 133060 ttggctggctggctgtcctt 133079
>dbj|AP000475.4| Homo sapiens genomic DNA, chromosome 21 clone:RP11-44J6, complete sequence Length = 160762 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 tcaattttctcagtttctca 252 |||||||||||||||||||| Sbjct: 6661 tcaattttctcagtttctca 6642
>dbj|AP006638.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT47I16, TM0208c, complete sequence Length = 48081 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 tatctgtcaattttctcagt 246 |||||||||||||||||||| Sbjct: 11997 tatctgtcaattttctcagt 12016
>emb|AL121578.1|HSXKSRPXR Homo sapiens chromosome X sequence from 12 cosmids, map Xp21.1 region DXS709-SRPX, complete sequence Length = 337101 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 gaaatctctgtctgccccat 63 |||||||||||||||||||| Sbjct: 85770 gaaatctctgtctgccccat 85789 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,135,630 Number of Sequences: 3902068 Number of extensions: 4135630 Number of successful extensions: 92229 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92064 Number of HSP's gapped (non-prelim): 165 length of query: 388 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 366 effective length of database: 17,147,199,772 effective search space: 6275875116552 effective search space used: 6275875116552 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)