>TBC13_MOUSE (Q8R3D1) TBC1 domain family member 13|
          Length = 400

 Score = 54.3 bits (129), Expect = 8e-08
 Identities = 29/64 (45%), Positives = 42/64 (65%)
 Frame = -2

Query: 313 IHIWDTLLSDPDGPQXTLXRIXXAMLILVRKRLLAGDFTSNLKLXQSYPPTNIGHLLYVA 134
           I IWD+L +D +     L  +  AMLIL+R++LL GDFT N++L Q YP T++  +L  A
Sbjct: 335 IRIWDSLFADGNRFDFLLL-VCCAMLILIREQLLEGDFTVNMRLLQDYPITDVCQILQKA 393

Query: 133 NKLQ 122
            +LQ
Sbjct: 394 KELQ 397

>TBC13_HUMAN (Q9NVG8) TBC1 domain family member 13|
          Length = 275

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 28/62 (45%), Positives = 41/62 (66%)
 Frame = -2

Query: 307 IWDTLLSDPDGPQXTLXRIXXAMLILVRKRLLAGDFTSNLKLXQSYPPTNIGHLLYVANK 128
           IWD+L +D D     L  +  AML+L+R++LL GDFT N++L Q YP T++  +L  A +
Sbjct: 212 IWDSLFAD-DNRFDFLLLVCCAMLMLIREQLLEGDFTVNMRLLQDYPITDVCQILQKAKE 270

Query: 127 LQ 122
           LQ
Sbjct: 271 LQ 272

>TB22B_MACFA (Q95LL3) TBC1 domain family member 22B|
          Length = 505

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
 Frame = -2

Query: 313 IHIWDTLLSDPDGPQXTLXRIXXAMLILVRKRLL-AGDFTSNLKLXQSYPPTN-----IG 152
           I +WDT  S+P+G       +  A LI  RK +L   DF   L L Q+ P  +     IG
Sbjct: 424 IRLWDTYQSEPEGFSHFHLYVCAAFLIKWRKEILDEEDFQGLLMLLQNLPTIHWGNEEIG 483

Query: 151 HLLYVANKLQ*M 116
            LL  A +L+ M
Sbjct: 484 LLLAEAYRLKYM 495

>TB22B_HUMAN (Q9NU19) TBC1 domain family member 22B|
          Length = 505

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
 Frame = -2

Query: 313 IHIWDTLLSDPDGPQXTLXRIXXAMLILVRKRLL-AGDFTSNLKLXQSYPPTN-----IG 152
           I +WDT  S+P+G       +  A LI  RK +L   DF   L L Q+ P  +     IG
Sbjct: 424 IRLWDTYQSEPEGFSHFHLYVCAAFLIKWRKEILDEEDFQGLLMLLQNLPTIHWGNEEIG 483

Query: 151 HLLYVANKLQ*M 116
            LL  A +L+ M
Sbjct: 484 LLLAEAYRLKYM 495

>TB22A_HUMAN (Q8WUA7) TBC1 domain family member 22A|
          Length = 517

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 313 IHIWDTLLSDPDGPQXTLXRIXXAMLILVRKRLL-AGDFTSNLKLXQSYP 167
           I +WDT  S+PDG       +  A L+  RK +L   DF   L   Q+ P
Sbjct: 436 IRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLP 485

>DNAA_STRRE (Q9ZH76) Chromosomal replication initiator protein dnaA|
          Length = 643

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 236 DPRPETAPCRRFHLQPQAXAELPSDEHRPPP 144
           +PRPE  P  R    P      PS+ HRP P
Sbjct: 137 EPRPEQLPSARPDQLPTVRPAYPSEYHRPEP 167

>TB22A_MACFA (Q95KI1) TBC1 domain family member 22A (Fragment)|
          Length = 497

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 313 IHIWDTLLSDPDGPQXTLXRIXXAMLILVRKRLL-AGDFTSNLKLXQSYP 167
           I +WDT  S+P+G       +  A L+  RK +L   DF   L   Q+ P
Sbjct: 416 IRLWDTYQSEPEGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLP 465

>NU5M_HIPAM (Q9ZZY1) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 594

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -2

Query: 307 IWDTLLSDPDGPQXTLXRIXXAMLILVRKRLLAGDFTSNLKLXQSYPP 164
           I+  LL  P  P  TL      +L+   KRL+AG   +   L  + PP
Sbjct: 427 IFFALLGHPRFPTSTLIHENNPLLLNSLKRLMAGSIFAGFILSHNLPP 474

>TB22A_MOUSE (Q8R5A6) TBC1 domain family member 22A|
          Length = 516

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 313 IHIWDTLLSDPDGPQXTLXRIXXAMLILVRKRLL-AGDFTSNLKLXQSYP 167
           I +WDT  S+P+G       +  A L+  R+ +L   DF   L   Q+ P
Sbjct: 435 IRLWDTYQSEPEGFSHFHLYVCAAFLVRWRREILEERDFQELLLFLQNLP 484


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,147,224
Number of Sequences: 219361
Number of extensions: 563321
Number of successful extensions: 1150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)