Clone Name | rbasd18b22 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK105143.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-B07, full insert sequence Length = 858 Score = 133 bits (67), Expect = 4e-28 Identities = 163/197 (82%) Strand = Plus / Minus Query: 118 ttcactgcagcttgtttgcaacgtagaggaggtggccgatgttcgtcggagggtagctct 177 |||| |||||||||||||| ||||| |||||||||| |||||| || || |||||| ||| Sbjct: 692 ttcagtgcagcttgtttgcgacgtaaaggaggtggctgatgtttgttggggggtagttct 633 Query: 178 gcanaagcttgaggttggaggtgaaatcgccggcaaggagccgtttccggacgaggatca 237 ||| |||||||| ||||| |||||||| || || | || ||||| ||||| || |||| Sbjct: 632 gcaggagcttgagattggaagtgaaatcaccagccaataggcgttttcggacaagaatca 573 Query: 238 gcattgcncancatattctcancaaggttnnctgaggaccatcggggtcacttaacaggg 297 ||||||| || || ||||| | |||||| |||||||||||| || |||||||| || | Sbjct: 572 gcattgcacagcagattctgagcaaggtctcctgaggaccatcaggatcacttaatagtg 513 Query: 298 tgtcccatatatgaata 314 |||||||||| |||||| Sbjct: 512 tgtcccatatgtgaata 496
>dbj|AK072293.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023017P18, full insert sequence Length = 1304 Score = 133 bits (67), Expect = 4e-28 Identities = 163/197 (82%) Strand = Plus / Minus Query: 118 ttcactgcagcttgtttgcaacgtagaggaggtggccgatgttcgtcggagggtagctct 177 |||| |||||||||||||| ||||| |||||||||| |||||| || || |||||| ||| Sbjct: 1138 ttcagtgcagcttgtttgcgacgtaaaggaggtggctgatgtttgttggggggtagttct 1079 Query: 178 gcanaagcttgaggttggaggtgaaatcgccggcaaggagccgtttccggacgaggatca 237 ||| |||||||| ||||| |||||||| || || | || ||||| ||||| || |||| Sbjct: 1078 gcaggagcttgagattggaagtgaaatcaccagccaataggcgttttcggacaagaatca 1019 Query: 238 gcattgcncancatattctcancaaggttnnctgaggaccatcggggtcacttaacaggg 297 ||||||| || || ||||| | |||||| |||||||||||| || |||||||| || | Sbjct: 1018 gcattgcacagcagattctgagcaaggtctcctgaggaccatcaggatcacttaatagtg 959 Query: 298 tgtcccatatatgaata 314 |||||||||| |||||| Sbjct: 958 tgtcccatatgtgaata 942
>dbj|AP003380.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0497A05 Length = 130919 Score = 95.6 bits (48), Expect = 8e-17 Identities = 122/148 (82%) Strand = Plus / Plus Query: 118 ttcactgcagcttgtttgcaacgtagaggaggtggccgatgttcgtcggagggtagctct 177 |||| |||||||||||||| ||||| |||||||||| |||||| || || |||||| ||| Sbjct: 86018 ttcagtgcagcttgtttgcgacgtaaaggaggtggctgatgtttgttggggggtagttct 86077 Query: 178 gcanaagcttgaggttggaggtgaaatcgccggcaaggagccgtttccggacgaggatca 237 ||| |||||||| ||||| |||||||| || || | || ||||| ||||| || |||| Sbjct: 86078 gcaggagcttgagattggaagtgaaatcaccagccaataggcgttttcggacaagaatca 86137 Query: 238 gcattgcncancatattctcancaaggt 265 ||||||| || || ||||| | |||||| Sbjct: 86138 gcattgcacagcagattctgagcaaggt 86165 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Plus Query: 269 ctgaggaccatcggggtcacttaacagggtgtcccatatatgaata 314 |||||||||||| || |||||||| || ||||||||||| |||||| Sbjct: 86251 ctgaggaccatcaggatcacttaatagtgtgtcccatatgtgaata 86296
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 95.6 bits (48), Expect = 8e-17 Identities = 122/148 (82%) Strand = Plus / Plus Query: 118 ttcactgcagcttgtttgcaacgtagaggaggtggccgatgttcgtcggagggtagctct 177 |||| |||||||||||||| ||||| |||||||||| |||||| || || |||||| ||| Sbjct: 39531576 ttcagtgcagcttgtttgcgacgtaaaggaggtggctgatgtttgttggggggtagttct 39531635 Query: 178 gcanaagcttgaggttggaggtgaaatcgccggcaaggagccgtttccggacgaggatca 237 ||| |||||||| ||||| |||||||| || || | || ||||| ||||| || |||| Sbjct: 39531636 gcaggagcttgagattggaagtgaaatcaccagccaataggcgttttcggacaagaatca 39531695 Query: 238 gcattgcncancatattctcancaaggt 265 ||||||| || || ||||| | |||||| Sbjct: 39531696 gcattgcacagcagattctgagcaaggt 39531723 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Plus Query: 269 ctgaggaccatcggggtcacttaacagggtgtcccatatatgaata 314 |||||||||||| || |||||||| || ||||||||||| |||||| Sbjct: 39531809 ctgaggaccatcaggatcacttaatagtgtgtcccatatgtgaata 39531854
>dbj|AP003416.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0456E05 Length = 173699 Score = 95.6 bits (48), Expect = 8e-17 Identities = 122/148 (82%) Strand = Plus / Plus Query: 118 ttcactgcagcttgtttgcaacgtagaggaggtggccgatgttcgtcggagggtagctct 177 |||| |||||||||||||| ||||| |||||||||| |||||| || || |||||| ||| Sbjct: 12532 ttcagtgcagcttgtttgcgacgtaaaggaggtggctgatgtttgttggggggtagttct 12591 Query: 178 gcanaagcttgaggttggaggtgaaatcgccggcaaggagccgtttccggacgaggatca 237 ||| |||||||| ||||| |||||||| || || | || ||||| ||||| || |||| Sbjct: 12592 gcaggagcttgagattggaagtgaaatcaccagccaataggcgttttcggacaagaatca 12651 Query: 238 gcattgcncancatattctcancaaggt 265 ||||||| || || ||||| | |||||| Sbjct: 12652 gcattgcacagcagattctgagcaaggt 12679 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Plus Query: 269 ctgaggaccatcggggtcacttaacagggtgtcccatatatgaata 314 |||||||||||| || |||||||| || ||||||||||| |||||| Sbjct: 12765 ctgaggaccatcaggatcacttaatagtgtgtcccatatgtgaata 12810
>dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1417F08 Length = 155536 Score = 95.6 bits (48), Expect = 8e-17 Identities = 122/148 (82%) Strand = Plus / Plus Query: 118 ttcactgcagcttgtttgcaacgtagaggaggtggccgatgttcgtcggagggtagctct 177 |||| |||||||||||||| ||||| |||||||||| |||||| || || |||||| ||| Sbjct: 106590 ttcagtgcagcttgtttgcgacgtaaaggaggtggctgatgtttgttggggggtagttct 106649 Query: 178 gcanaagcttgaggttggaggtgaaatcgccggcaaggagccgtttccggacgaggatca 237 ||| |||||||| ||||| |||||||| || || | || ||||| ||||| || |||| Sbjct: 106650 gcaggagcttgagattggaagtgaaatcaccagccaataggcgttttcggacaagaatca 106709 Query: 238 gcattgcncancatattctcancaaggt 265 ||||||| || || ||||| | |||||| Sbjct: 106710 gcattgcacagcagattctgagcaaggt 106737 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Plus Query: 269 ctgaggaccatcggggtcacttaacagggtgtcccatatatgaata 314 |||||||||||| || |||||||| || ||||||||||| |||||| Sbjct: 106823 ctgaggaccatcaggatcacttaatagtgtgtcccatatgtgaata 106868
>gb|BT018106.1| Zea mays clone EL01N0553D05.c mRNA sequence Length = 1626 Score = 61.9 bits (31), Expect = 1e-06 Identities = 84/102 (82%) Strand = Plus / Minus Query: 140 gtagaggaggtggccgatgttcgtcggagggtagctctgcanaagcttgaggttggaggt 199 ||||||| |||||| ||||||||| || |||| |||||| |||| |||| ||||||| Sbjct: 1354 gtagaggtggtggctgatgttcgttggcaggtaattctgcaggagctcgaggatggaggt 1295 Query: 200 gaaatcgccggcaaggagccgtttccggacgaggatcagcat 241 |||||||||||| ||| || |||||||| |||| |||||| Sbjct: 1294 gaaatcgccggcccagaggcgcttccggacaaggaacagcat 1253
>ref|XM_463585.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1281 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Minus Query: 269 ctgaggaccatcggggtcacttaacagggtgtcccatatatgaata 314 |||||||||||| || |||||||| || ||||||||||| |||||| Sbjct: 942 ctgaggaccatcaggatcacttaatagtgtgtcccatatgtgaata 897
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 gaggttggaggtgaaatcgc 207 |||||||||||||||||||| Sbjct: 490065 gaggttggaggtgaaatcgc 490084
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 cgtttccggacgaggatcag 238 |||||||||||||||||||| Sbjct: 5065052 cgtttccggacgaggatcag 5065071
>emb|AL513304.27| Human DNA sequence from clone RP11-398B16 on chromosome 10 Contains part of the gene for double-stranded RNA specific adenosine deaminase (ADAR3), a novel gene and two CpG islands, complete sequence Length = 163243 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gcttgaggttggaggtgaaa 203 |||||||||||||||||||| Sbjct: 109183 gcttgaggttggaggtgaaa 109164
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 cgtagaggaggtggccgatg 158 |||||||||||||||||||| Sbjct: 2880922 cgtagaggaggtggccgatg 2880941
>dbj|AP006533.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0085L11 Length = 148142 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 cgtagaggaggtggccgatg 158 |||||||||||||||||||| Sbjct: 124403 cgtagaggaggtggccgatg 124422
>dbj|AP007223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0046E09 Length = 146776 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 cgtagaggaggtggccgatg 158 |||||||||||||||||||| Sbjct: 41068 cgtagaggaggtggccgatg 41087
>gb|AC163702.3| Gallus gallus BAC clone CH261-124A8 from chromosome ul, complete sequence Length = 179537 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 aacagatgagcattcactgc 125 |||||||||||||||||||| Sbjct: 81733 aacagatgagcattcactgc 81714 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,808,944 Number of Sequences: 3902068 Number of extensions: 1808944 Number of successful extensions: 28015 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27939 Number of HSP's gapped (non-prelim): 76 length of query: 314 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 292 effective length of database: 17,147,199,772 effective search space: 5006982333424 effective search space used: 5006982333424 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)