ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd18b15 |
|---|---|
| Clone Library Name | barley_pub |
>FXL14_MOUSE (Q8BID8) F-box/LRR-repeat protein 14 (F-box and leucine-rich repeat| protein 14) Length = 400 Score = 37.4 bits (85), Expect = 0.021 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Frame = -3 Query: 463 ITDAGVKNIKDLKALTXXNLSQNXXLTXKTLXIISGLTSLVSMNLSYYR-VSNAGLHHLR 287 +T + + L+ LT + + L+ K I GLT L +NLS+ +S+AGL HL Sbjct: 193 MTRSAAEGCLGLEQLTLQDCQKLTDLSLK--HISRGLTGLRLLNLSFCGGISDAGLLHLS 250 Query: 286 PLQNLRSLSLDSC 248 + +LRSL+L SC Sbjct: 251 HMGSLRSLNLRSC 263
>FXL14_HUMAN (Q8N1E6) F-box/LRR-repeat protein 14 (F-box and leucine-rich repeat| protein 14) Length = 418 Score = 37.4 bits (85), Expect = 0.021 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Frame = -3 Query: 463 ITDAGVKNIKDLKALTXXNLSQNXXLTXKTLXIISGLTSLVSMNLSYYR-VSNAGLHHLR 287 +T + + L+ LT + + L+ K I GLT L +NLS+ +S+AGL HL Sbjct: 193 MTRSAAEGCLGLEQLTLQDCQKLTDLSLK--HISRGLTGLRLLNLSFCGGISDAGLLHLS 250 Query: 286 PLQNLRSLSLDSC 248 + +LRSL+L SC Sbjct: 251 HMGSLRSLNLRSC 263
>SLIT_DROME (P24014) Protein slit precursor [Contains: Protein slit N-product;| Protein slit C-product] Length = 1504 Score = 34.7 bits (78), Expect = 0.14 Identities = 22/69 (31%), Positives = 38/69 (55%) Frame = -3 Query: 445 KNIKDLKALTXXNLSQNXXLTXKTLXIISGLTSLVSMNLSYYRVSNAGLHHLRPLQNLRS 266 + I+ L++LT +LS N +T + + LT L ++ +SY ++ H L L NLR Sbjct: 784 ERIRHLRSLTRLDLSNNQ-ITILSNYTFANLTKLSTLIISYNKLQCLQRHALSGLNNLRV 842 Query: 265 LSLDSCKVT 239 LSL +++ Sbjct: 843 LSLHGNRIS 851
>FXL13_HUMAN (Q8NEE6) F-box/LRR-repeat protein 13 (F-box and leucine-rich repeat| protein 13) Length = 735 Score = 34.3 bits (77), Expect = 0.18 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Frame = -3 Query: 463 ITDAGVKNIKD-LKALTXXNLSQNXXLTXKTLXIISGLTSLVSMNLSYYRVSNAGLHHLR 287 ++DA V + + L +L LT + + I + SLVS++LS +SN GL+ L Sbjct: 492 LSDASVMKLSERCPNLNYLSLRNCEHLTAQGIGYIVNIFSLVSIDLSGTDISNEGLNVLS 551 Query: 286 PLQNLRSLSLDSC 248 + L+ LS+ C Sbjct: 552 RHKKLKELSVSEC 564
>TLR13_MOUSE (Q6R5N8) Toll-like receptor 13 precursor| Length = 991 Score = 32.7 bits (73), Expect = 0.52 Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 7/110 (6%) Frame = -3 Query: 463 ITDAGVKNIKDLKALTXXNLS--QNXXLTXKTLXII-----SGLTSLVSMNLSYYRVSNA 305 + D G NI+ L T L Q+ L+ L I+ SGLT+L S++L Y +S Sbjct: 496 VLDLGDNNIRTLNHGTFRPLKKLQSLILSHNCLKILEPNSFSGLTNLRSLDLMYNSLSYF 555 Query: 304 GLHHLRPLQNLRSLSLDSCKVTACEVKKLXLAALPNLVSVRPE*SXGNRH 155 H L+ L L L K+T + L L S++ G RH Sbjct: 556 HEHLFSGLEKLLILKLGFNKITYETTRTLQYPPFIKLKSLKQLNLEGQRH 605 Score = 29.3 bits (64), Expect = 5.7 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Frame = -3 Query: 463 ITDA-GVKNIKDLKALTXXNLSQNXXLTXKTLXIISGLTSLVSMNLSYYRVSNAGLHHLR 287 +T+A G+K + L +L QN L + L SL +NL+ ++S Sbjct: 358 VTNAEGIKQLAKCTRLLFLDLGQNSDLIYLNDSEFNALPSLQKLNLNKCQLSFINNRTWS 417 Query: 286 PLQNLRSLSLDSCK 245 LQNL SL L K Sbjct: 418 SLQNLTSLDLSHNK 431
>TLR2_CANFA (Q689D1) Toll-like receptor 2 precursor (CD282 antigen)| Length = 785 Score = 32.3 bits (72), Expect = 0.67 Identities = 23/69 (33%), Positives = 34/69 (49%) Frame = -3 Query: 463 ITDAGVKNIKDLKALTXXNLSQNXXLTXKTLXIISGLTSLVSMNLSYYRVSNAGLHHLRP 284 IT G +++D L L N T + +S L SL ++LSY +SN RP Sbjct: 65 ITYIGNSDLRDCVNLKALRLESNGINTIEEESFLS-LWSLEHLDLSYNLLSNLSSSWFRP 123 Query: 283 LQNLRSLSL 257 L +L+ L+L Sbjct: 124 LSSLKFLNL 132
>CPN2_MOUSE (Q9DBB9) Carboxypeptidase N subunit 2 precursor (Carboxypeptidase N| polypeptide 2) (Carboxypeptidase N 83 kDa chain) (Carboxypeptidase N regulatory subunit) (Carboxypeptidase N large subunit) Length = 547 Score = 31.2 bits (69), Expect = 1.5 Identities = 17/42 (40%), Positives = 26/42 (61%) Frame = -3 Query: 361 SGLTSLVSMNLSYYRVSNAGLHHLRPLQNLRSLSLDSCKVTA 236 + L+ LVS+ LS+ +++ H R L+ L LSLDS +TA Sbjct: 310 TNLSRLVSLTLSHNAITDLPEHVFRNLEQLVKLSLDSNNLTA 351
>INLA_LISMO (P25146) Internalin A precursor| Length = 800 Score = 30.4 bits (67), Expect = 2.6 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 3/91 (3%) Frame = -3 Query: 448 VKNIKDLKALTXXNLSQNXXLTXKTLXIISGLTSLVSMNLSYYRVSNAGLHHLRPLQNLR 269 + +I LK LT N + T + +SGLTSL ++ + L+PL NL Sbjct: 154 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQ------VTDLKPLANLT 207 Query: 268 S---LSLDSCKVTACEVKKLXLAALPNLVSV 185 + L + S KV+ V LA L NL S+ Sbjct: 208 TLERLDISSNKVSDISV----LAKLTNLESL 234
>INLA_LISMF (Q723K6) Internalin A precursor| Length = 800 Score = 30.4 bits (67), Expect = 2.6 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 3/91 (3%) Frame = -3 Query: 448 VKNIKDLKALTXXNLSQNXXLTXKTLXIISGLTSLVSMNLSYYRVSNAGLHHLRPLQNLR 269 + +I LK LT N + T + +SGLTSL ++ + L+PL NL Sbjct: 154 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQ------VTDLKPLANLT 207 Query: 268 S---LSLDSCKVTACEVKKLXLAALPNLVSV 185 + L + S KV+ V LA L NL S+ Sbjct: 208 TLERLDISSNKVSDISV----LAKLTNLESL 234
>AN32A_RAT (P49911) Acidic leucine-rich nuclear phosphoprotein 32 family| member A (Leucine-rich acidic nuclear protein) Length = 247 Score = 30.4 bits (67), Expect = 2.6 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Frame = -3 Query: 448 VKNIKDLKALTXXNLSQNXXLTXKTLXIISGLTSLVSMNLSYYRVSNAG-LHHLRPLQNL 272 + N+ L L LS+N ++ + +L +NLS ++ + + L+ L+NL Sbjct: 57 ISNLPKLNKLKKLELSENR-ISGDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENL 115 Query: 271 RSLSLDSCKVT 239 +SL L +C+VT Sbjct: 116 KSLDLFNCEVT 126
>AN32A_MOUSE (O35381) Acidic leucine-rich nuclear phosphoprotein 32 family| member A (Potent heat-stable protein phosphatase 2A inhibitor I1PP2A) (Acidic nuclear phosphoprotein pp32) (Cerebellar leucine-rich acidic nuclear protein) Length = 247 Score = 30.4 bits (67), Expect = 2.6 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Frame = -3 Query: 448 VKNIKDLKALTXXNLSQNXXLTXKTLXIISGLTSLVSMNLSYYRVSNAG-LHHLRPLQNL 272 + N+ L L LS+N ++ + +L +NLS ++ + + L+ L+NL Sbjct: 57 ISNLPKLNKLKKLELSENR-ISGDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENL 115 Query: 271 RSLSLDSCKVT 239 +SL L +C+VT Sbjct: 116 KSLDLFNCEVT 126
>AN32D_HUMAN (O95626) Acidic leucine-rich nuclear phosphoprotein 32 family| member D (Tumorigenic protein pp32r2) Length = 131 Score = 30.4 bits (67), Expect = 2.6 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Frame = -3 Query: 454 AGVKNIKDLKALTXXNLSQNXXLTXKTLXIISGLTSLVSMNLSYYRVSNAG-LHHLRPLQ 278 + + N+ L L LS N + + +L+ +NLS ++ + + L+ L+ Sbjct: 55 SSIANLPKLNKLKKLELSSNRASVGLEV-LAEKCPNLIHLNLSGNKIKDLSTIEPLKKLE 113 Query: 277 NLRSLSLDSCKVT 239 NL SL L +C+VT Sbjct: 114 NLESLDLFTCEVT 126
>AROKB_BIFLO (Q8G5X4) Bifunctional shikimate kinase/3-dehydroquinate synthase| [Includes: Shikimate kinase (EC 2.7.1.71) (SK); 3-dehydroquinate synthase (EC 4.2.3.4)] Length = 540 Score = 30.0 bits (66), Expect = 3.3 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 16/79 (20%) Frame = +2 Query: 98 RRPVLPALLGVVIFTRG----------------RKVPVTGRLLRTHAYQVGEGGQXKLLD 229 R PV + V + TRG R V VTG + + +GEG L+D Sbjct: 142 RDPVFREVANVHVHTRGLTPQGAAKKVIDMVSERAVHVTGAAIEPYDVVIGEGAMNHLVD 201 Query: 230 LAGRHLARVERQRAQVLQR 286 + G A++ Q +QR Sbjct: 202 VLGPKPAKIALIHTQPVQR 220
>LRFN5_MOUSE (Q8BXA0) Leucine-rich repeat and fibronectin type-III| domain-containing protein 5 precursor Length = 719 Score = 29.6 bits (65), Expect = 4.4 Identities = 16/41 (39%), Positives = 25/41 (60%) Frame = -3 Query: 361 SGLTSLVSMNLSYYRVSNAGLHHLRPLQNLRSLSLDSCKVT 239 + +TSLV + LS +S H L+NLR+L L+S ++T Sbjct: 72 ANMTSLVDLTLSRNTISFITPHAFADLRNLRALHLNSNRLT 112
>LRFN5_HUMAN (Q96NI6) Leucine-rich repeat and fibronectin type-III| domain-containing protein 5 precursor Length = 719 Score = 29.6 bits (65), Expect = 4.4 Identities = 16/41 (39%), Positives = 25/41 (60%) Frame = -3 Query: 361 SGLTSLVSMNLSYYRVSNAGLHHLRPLQNLRSLSLDSCKVT 239 + +TSLV + LS +S H L+NLR+L L+S ++T Sbjct: 72 ANMTSLVDLTLSRNTISFITPHAFADLRNLRALHLNSNRLT 112
>FXL17_MOUSE (Q9QZN1) F-box/LRR-repeat protein 17 (F-box and leucine-rich repeat| protein 17) (F-box only protein 13) (Fragment) Length = 462 Score = 29.6 bits (65), Expect = 4.4 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%) Frame = -3 Query: 463 ITDAGVKNIKDLKALTXXNLSQNXXLTXKT-LXIISGLTSLVSMNLSYYRVSNAGLHHL- 290 +T GV ++ L+ L+ +L L +T + I+ +L S+NL + N + Sbjct: 289 VTSKGVIHLTKLRNLSSLDLRHITELDNETVMEIVKRCKNLSSLNLCLNWIINDRCVEVI 348 Query: 289 -RPLQNLRSLSLDSCKVT 239 + QNL+ L L SCK+T Sbjct: 349 AKEGQNLKELYLVSCKIT 366
>FXL17_HUMAN (Q9UF56) F-box/LRR-repeat protein 17 (F-box and leucine-rich repeat| protein 17) (F-box only protein 13) (Fragment) Length = 370 Score = 29.6 bits (65), Expect = 4.4 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%) Frame = -3 Query: 463 ITDAGVKNIKDLKALTXXNLSQNXXLTXKT-LXIISGLTSLVSMNLSYYRVSNAGLHHL- 290 +T GV ++ L+ L+ +L L +T + I+ +L S+NL + N + Sbjct: 197 VTSKGVIHLTKLRNLSSLDLRHITELDNETVMEIVKRCKNLSSLNLCLNWIINDRCVEVI 256 Query: 289 -RPLQNLRSLSLDSCKVT 239 + QNL+ L L SCK+T Sbjct: 257 AKEGQNLKELYLVSCKIT 274
>AN32A_HUMAN (P39687) Acidic leucine-rich nuclear phosphoprotein 32 family| member A (Potent heat-stable protein phosphatase 2A inhibitor I1PP2A) (Acidic nuclear phosphoprotein pp32) (Cerebellar leucine-rich acidic nuclear protein) (HLA-DR-associated prote Length = 249 Score = 29.3 bits (64), Expect = 5.7 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = -3 Query: 448 VKNIKDLKALTXXNLSQNXXLTXKTLXIISGLTSLVSMNLSYYRVSNAG-LHHLRPLQNL 272 + N+ L L LS N ++ + +L +NLS ++ + + L+ L+NL Sbjct: 57 IANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL 115 Query: 271 RSLSLDSCKVT 239 +SL L +C+VT Sbjct: 116 KSLDLFNCEVT 126
>RXFP1_HUMAN (Q9HBX9) Relaxin receptor 1 (Relaxin family peptide receptor 1)| (Leucine-rich repeat-containing G-protein coupled receptor 7) Length = 757 Score = 29.3 bits (64), Expect = 5.7 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 7/90 (7%) Frame = -3 Query: 436 KDLKALTXXNLSQNXXLTXKTLXIISGLTSLVSMNLSYYRVSNAGLHHLRPLQNLRSLSL 257 KDLK L+ NLS N + L L S++L +SN RPL NL + Sbjct: 316 KDLKELSQLNLSYNPIQKIQANQF-DYLVKLKSLSLEGIEISNIQQRMFRPLMNLSHIYF 374 Query: 256 DSCK-------VTACEVKKLXLAALPNLVS 188 + V +C+ +++L NL++ Sbjct: 375 KKFQYCGYAPHVRSCKPNTDGISSLENLLA 404
>RB3GP_DROME (Q9VQ26) Rab3 GTPase-activating protein catalytic subunit| Length = 916 Score = 29.3 bits (64), Expect = 5.7 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 4/47 (8%) Frame = -2 Query: 482 GGLRRVNHRRWSEE-HQGPQSPDVXEPIPKRXPHXQDLXD---NLGP 354 G LRR+N+ R EE + PD EP+PK QD + LGP Sbjct: 581 GRLRRLNNERLLEEPDEYLYIPDTQEPVPKTEDQLQDDAEVMLKLGP 627
>AMGO3_RAT (Q80ZD5) Amphoterin-induced protein 3 precursor (AMIGO-3)| (Alivin-3) Length = 508 Score = 28.5 bits (62), Expect = 9.7 Identities = 27/90 (30%), Positives = 34/90 (37%) Frame = -3 Query: 397 NXXLTXKTLXIISGLTSLVSMNLSYYRVSNAGLHHLRPLQNLRSLSLDSCKVTACEVKKL 218 N L L GL+ L + LS +S+ +HL L R +LD V Sbjct: 142 NNRLMHLDLDAFQGLSMLSHLYLSCNELSSFSFNHLHGLGLTRLRTLDLSSNWLGHVSVP 201 Query: 217 XLAALPNLVSVRPE*SXGNRHLPSTCKYDH 128 LAALP + R N LP C H Sbjct: 202 ELAALPTFLKNRL--YLHNNPLPCDCSLYH 229
>LRC33_RAT (Q5BK65) Leucine-rich repeat-containing protein 33 precursor| Length = 692 Score = 28.5 bits (62), Expect = 9.7 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 12/79 (15%) Frame = -3 Query: 430 LKALTXXNLSQNXXLTXKTLXIISGLTSLVSMNLSYYRVS------------NAGLHHLR 287 LK L NLS N L T + +S+ ++++S+ ++S + R Sbjct: 401 LKNLRVFNLSSNQLLGVPT-GLFHSASSITTLDMSHNQISLCPQTVPLDWEEPSSCVDFR 459 Query: 286 PLQNLRSLSLDSCKVTACE 230 + +LRSLSLD C + A + Sbjct: 460 NMASLRSLSLDGCGLKALQ 478 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,572,315 Number of Sequences: 219361 Number of extensions: 909429 Number of successful extensions: 2658 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2424 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2657 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
