ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18b15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY103901.1| Zea mays PCO142939 mRNA sequence 94 5e-16
2ref|XM_473075.1| Oryza sativa (japonica cultivar-group), predic... 78 3e-11
3dbj|AK105091.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
4dbj|AK099404.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 70 7e-09
6dbj|AK101695.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 7e-09
7emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 70 7e-09
8ref|XM_507496.1| PREDICTED Oryza sativa (japonica cultivar-group... 56 1e-04
9ref|XM_506866.1| PREDICTED Oryza sativa (japonica cultivar-group... 56 1e-04
10ref|XM_466700.1| Oryza sativa (japonica cultivar-group), mRNA 56 1e-04
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
12dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
13dbj|AK098974.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
14dbj|AK098853.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
15dbj|AK065051.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
16gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 6.5
17emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.5
18gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 6.5
19gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 6.5 
>gb|AY103901.1| Zea mays PCO142939 mRNA sequence
          Length = 1490

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 226/289 (78%)
 Strand = Plus / Minus

                                                                        
Query: 195  aggttggggagggcggccagntgaagcttcttgacctcgcaggccgtcaccttgcacgag 254
            ||||||||||||||| ||||  | ||||| |  | |||||  ||||||||| |||| || 
Sbjct: 1343 aggttggggagggcgaccagccggagcttatccatctcgcttgccgtcaccctgcaggac 1284

                                                                        
Query: 255  tcgagcgacagcgagcgcaggttctgcagcggcctnagatggtggaggcctgcgttcgac 314
            || || || || ||||||||||||||||||||  | || ||||||||||| | ||| || 
Sbjct: 1283 tccagggatagggagcgcaggttctgcagcggtttcaggtggtggaggcccgagttggag 1224

                                                                        
Query: 315  acccgatagtacgacaggttcatngagaccaaagacgtcaggcccgagattatctncaag 374
            |||||  |||  |||| |||||  || || |  |  |||||||| ||||| | || || |
Sbjct: 1223 acccgggagttggacacgttcaacgacactagcgcagtcaggccggagatcagctccagg 1164

                                                                        
Query: 375  gtcttgnctgtgaggntgncgttttgggataggttcannaacgtcagggctttgaggtcc 434
            || ||| | |||||  || ||||||| |||||||| |  |||||||| ||||| ||||||
Sbjct: 1163 gttttgtccgtgagcttgccgttttgagataggttgagcaacgtcagagctttcaggtcc 1104

                                                             
Query: 435  ttgatgttcttcactccagcgtcggtgattaacccgncgcaggcctcca 483
            |||||||||||||| ||||| || || || |||||  ||||| ||||||
Sbjct: 1103 ttgatgttcttcacgccagcatccgtaatcaacccaccgcagacctcca 1055
to top
>ref|XM_473075.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1746

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 165/210 (78%)
 Strand = Plus / Minus

                                                                        
Query: 272  caggttctgcagcggcctnagatggtggaggcctgcgttcgacacccgatagtacgacag 331
            ||||||||| || ||| | ||||||||||| || |  |||||||||||| ||| ||||| 
Sbjct: 1647 caggttctggagtggcttcagatggtggagcccagaattcgacacccgagagttcgacac 1588

                                                                        
Query: 332  gttcatngagaccaaagacgtcaggcccgagattatctncaaggtcttgnctgtgaggnt 391
            |||||  |||||||| |  || ||||  || || | ||  ||||  ||| | |||||| |
Sbjct: 1587 gttcagggagaccaaggcagtgaggcgggaaatcagctctaaggatttgtcagtgaggtt 1528

                                                                        
Query: 392  gncgttttgggataggttcannaacgtcagggctttgaggtccttgatgttcttcactcc 451
            | | ||||| |||||||| |  | |||||| ||||||||||| ||||| |||||||||||
Sbjct: 1527 gccattttgagataggttaagcagcgtcagagctttgaggtctttgatattcttcactcc 1468

                                          
Query: 452  agcgtcggtgattaacccgncgcaggcctc 481
            ||| || || ||||||||  ||||| ||||
Sbjct: 1467 agcatctgtaattaacccaccgcagacctc 1438
to top
>dbj|AK105091.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-F06, full
            insert sequence
          Length = 1431

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 165/210 (78%)
 Strand = Plus / Minus

                                                                        
Query: 272  caggttctgcagcggcctnagatggtggaggcctgcgttcgacacccgatagtacgacag 331
            ||||||||| || ||| | ||||||||||| || |  |||||||||||| ||| ||||| 
Sbjct: 1023 caggttctggagtggcttcagatggtggagcccagaattcgacacccgagagttcgacac 964

                                                                        
Query: 332  gttcatngagaccaaagacgtcaggcccgagattatctncaaggtcttgnctgtgaggnt 391
            |||||  |||||||| |  || ||||  || || | ||  ||||  ||| | |||||| |
Sbjct: 963  gttcagggagaccaaggcagtgaggcgggaaatcagctctaaggatttgtcagtgaggtt 904

                                                                        
Query: 392  gncgttttgggataggttcannaacgtcagggctttgaggtccttgatgttcttcactcc 451
            | | ||||| |||||||| |  | |||||| ||||||||||| ||||| |||||||||||
Sbjct: 903  gccattttgagataggttaagcagcgtcagagctttgaggtctttgatattcttcactcc 844

                                          
Query: 452  agcgtcggtgattaacccgncgcaggcctc 481
            ||| || || ||||||||  ||||| ||||
Sbjct: 843  agcatctgtaattaacccaccgcagacctc 814
to top
>dbj|AK099404.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001H05, full
            insert sequence
          Length = 2375

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 165/210 (78%)
 Strand = Plus / Minus

                                                                        
Query: 272  caggttctgcagcggcctnagatggtggaggcctgcgttcgacacccgatagtacgacag 331
            ||||||||| || ||| | ||||||||||| || |  |||||||||||| ||| ||||| 
Sbjct: 1958 caggttctggagtggcttcagatggtggagcccagaattcgacacccgagagttcgacac 1899

                                                                        
Query: 332  gttcatngagaccaaagacgtcaggcccgagattatctncaaggtcttgnctgtgaggnt 391
            |||||  |||||||| |  || ||||  || || | ||  ||||  ||| | |||||| |
Sbjct: 1898 gttcagggagaccaaggcagtgaggcgggaaatcagctctaaggatttgtcagtgaggtt 1839

                                                                        
Query: 392  gncgttttgggataggttcannaacgtcagggctttgaggtccttgatgttcttcactcc 451
            | | ||||| |||||||| |  | |||||| ||||||||||| ||||| |||||||||||
Sbjct: 1838 gccattttgagataggttaagcagcgtcagagctttgaggtctttgatattcttcactcc 1779

                                          
Query: 452  agcgtcggtgattaacccgncgcaggcctc 481
            ||| || || ||||||||  ||||| ||||
Sbjct: 1778 agcatctgtaattaacccaccgcagacctc 1749
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 81/98 (82%)
 Strand = Plus / Plus

                                                                            
Query: 384      gtgaggntgncgttttgggataggttcannaacgtcagggctttgaggtccttgatgttc 443
                |||||| || | ||||| |||||||| |  | |||||| ||||||||||| ||||| |||
Sbjct: 25102597 gtgaggttgccattttgagataggttaagcagcgtcagagctttgaggtctttgatattc 25102656

                                                      
Query: 444      ttcactccagcgtcggtgattaacccgncgcaggcctc 481
                ||||||||||| || || ||||||||  ||||| ||||
Sbjct: 25102657 ttcactccagcatctgtaattaacccaccgcagacctc 25102694



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 86/107 (80%)
 Strand = Plus / Plus

                                                                            
Query: 240      gtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcagcggcctnagatggtgg 299
                ||||||||||| || || || ||||  || | ||||||||| || ||| | |||||||||
Sbjct: 25102372 gtcaccttgcaggactccagagacaaggacctcaggttctggagtggcttcagatggtgg 25102431

                                                               
Query: 300      aggcctgcgttcgacacccgatagtacgacaggttcatngagaccaa 346
                || || |  |||||||||||| ||| ||||| |||||  ||||||||
Sbjct: 25102432 agcccagaattcgacacccgagagttcgacacgttcagggagaccaa 25102478
to top
>dbj|AK101695.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033060B12, full
            insert sequence
          Length = 2265

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 188/242 (77%)
 Strand = Plus / Minus

                                                                        
Query: 240  gtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcagcggcctnagatggtgg 299
            ||||||||||| || || || ||||  || | ||||||||| || ||| | |||||||||
Sbjct: 1884 gtcaccttgcaggactccagagacaaggacctcaggttctggagtggcttcagatggtgg 1825

                                                                        
Query: 300  aggcctgcgttcgacacccgatagtacgacaggttcatngagaccaaagacgtcaggccc 359
            || || |  |||||||||||| ||| ||||| |||||  |||||||| |  || ||||  
Sbjct: 1824 agcccagaattcgacacccgagagttcgacacgttcagggagaccaaggcagtgaggcgg 1765

                                                                        
Query: 360  gagattatctncaaggtcttgnctgtgaggntgncgttttgggataggttcannaacgtc 419
            || || | ||  || |  ||| | |||||| || | ||||| |||||||| |  | ||||
Sbjct: 1764 gaaatcagctctaatgatttgtcagtgaggttgccattttgagataggttaagcagcgtc 1705

                                                                        
Query: 420  agggctttgaggtccttgatgttcttcactccagcgtcggtgattaacccgncgcaggcc 479
            || ||||||||||| ||||| |||||||||||||| || || ||||||||  ||||| ||
Sbjct: 1704 agagctttgaggtctttgatattcttcactccagcatctgtaattaacccaccgcagacc 1645

              
Query: 480  tc 481
            ||
Sbjct: 1644 tc 1643
to top
>emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0014K14,
             complete sequence
          Length = 150187

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 81/98 (82%)
 Strand = Plus / Plus

                                                                         
Query: 384   gtgaggntgncgttttgggataggttcannaacgtcagggctttgaggtccttgatgttc 443
             |||||| || | ||||| |||||||| |  | |||||| ||||||||||| ||||| |||
Sbjct: 50024 gtgaggttgccattttgagataggttaagcagcgtcagagctttgaggtctttgatattc 50083

                                                   
Query: 444   ttcactccagcgtcggtgattaacccgncgcaggcctc 481
             ||||||||||| || || ||||||||  ||||| ||||
Sbjct: 50084 ttcactccagcatctgtaattaacccaccgcagacctc 50121



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 86/107 (80%)
 Strand = Plus / Plus

                                                                         
Query: 240   gtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcagcggcctnagatggtgg 299
             ||||||||||| || || || ||||  || | ||||||||| || ||| | |||||||||
Sbjct: 49799 gtcaccttgcaggactccagagacaaggacctcaggttctggagtggcttcagatggtgg 49858

                                                            
Query: 300   aggcctgcgttcgacacccgatagtacgacaggttcatngagaccaa 346
             || || |  |||||||||||| ||| ||||| |||||  ||||||||
Sbjct: 49859 agcccagaattcgacacccgagagttcgacacgttcagggagaccaa 49905
to top
>ref|XM_507496.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1004_A05.39 mRNA
          Length = 2521

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 418  tcagggctttgaggtccttgatgttcttcactccagcgtcggtgattaaccc 469
            |||| |||||||| |||||||| |||||||||||||| || || ||||||||
Sbjct: 1878 tcagagctttgagatccttgatattcttcactccagcatcagtaattaaccc 1827



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 258  agcgacagcgagcgcaggttctgcag 283
            ||||||||||||||||||||||||||
Sbjct: 2038 agcgacagcgagcgcaggttctgcag 2013
to top
>ref|XM_506866.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1004_A05.39 mRNA
          Length = 2538

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 418  tcagggctttgaggtccttgatgttcttcactccagcgtcggtgattaaccc 469
            |||| |||||||| |||||||| |||||||||||||| || || ||||||||
Sbjct: 1835 tcagagctttgagatccttgatattcttcactccagcatcagtaattaaccc 1784



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 258  agcgacagcgagcgcaggttctgcag 283
            ||||||||||||||||||||||||||
Sbjct: 1995 agcgacagcgagcgcaggttctgcag 1970
to top
>ref|XM_466700.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2507

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 418  tcagggctttgaggtccttgatgttcttcactccagcgtcggtgattaaccc 469
            |||| |||||||| |||||||| |||||||||||||| || || ||||||||
Sbjct: 1784 tcagagctttgagatccttgatattcttcactccagcatcagtaattaaccc 1733



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 258  agcgacagcgagcgcaggttctgcag 283
            ||||||||||||||||||||||||||
Sbjct: 1944 agcgacagcgagcgcaggttctgcag 1919
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                    
Query: 418      tcagggctttgaggtccttgatgttcttcactccagcgtcggtgattaaccc 469
                |||| |||||||| |||||||| |||||||||||||| || || ||||||||
Sbjct: 24187064 tcagagctttgagatccttgatattcttcactccagcatcagtaattaaccc 24187115



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                          
Query: 258      agcgacagcgagcgcaggttctgcag 283
                ||||||||||||||||||||||||||
Sbjct: 24186799 agcgacagcgagcgcaggttctgcag 24186824
to top
>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1004_A05
          Length = 174290

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                  
Query: 418    tcagggctttgaggtccttgatgttcttcactccagcgtcggtgattaaccc 469
              |||| |||||||| |||||||| |||||||||||||| || || ||||||||
Sbjct: 145805 tcagagctttgagatccttgatattcttcactccagcatcagtaattaaccc 145856



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                        
Query: 258    agcgacagcgagcgcaggttctgcag 283
              ||||||||||||||||||||||||||
Sbjct: 145540 agcgacagcgagcgcaggttctgcag 145565
to top
>dbj|AK098974.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091J20, full
            insert sequence
          Length = 2522

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 418  tcagggctttgaggtccttgatgttcttcactccagcgtcggtgattaaccc 469
            |||| |||||||| |||||||| |||||||||||||| || || ||||||||
Sbjct: 1878 tcagagctttgagatccttgatattcttcactccagcatcagtaattaaccc 1827



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 258  agcgacagcgagcgcaggttctgcag 283
            ||||||||||||||||||||||||||
Sbjct: 2038 agcgacagcgagcgcaggttctgcag 2013
to top
>dbj|AK098853.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000H15, full
            insert sequence
          Length = 2538

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 418  tcagggctttgaggtccttgatgttcttcactccagcgtcggtgattaaccc 469
            |||| |||||||| |||||||| |||||||||||||| || || ||||||||
Sbjct: 1835 tcagagctttgagatccttgatattcttcactccagcatcagtaattaaccc 1784



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 258  agcgacagcgagcgcaggttctgcag 283
            ||||||||||||||||||||||||||
Sbjct: 1995 agcgacagcgagcgcaggttctgcag 1970
to top
>dbj|AK065051.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001I18, full
            insert sequence
          Length = 2507

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 418  tcagggctttgaggtccttgatgttcttcactccagcgtcggtgattaaccc 469
            |||| |||||||| |||||||| |||||||||||||| || || ||||||||
Sbjct: 1784 tcagagctttgagatccttgatattcttcactccagcatcagtaattaaccc 1733



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 258  agcgacagcgagcgcaggttctgcag 283
            ||||||||||||||||||||||||||
Sbjct: 1944 agcgacagcgagcgcaggttctgcag 1919
to top
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 254     gtcgagcgacagcgagcgca 273
               ||||||||||||||||||||
Sbjct: 1736506 gtcgagcgacagcgagcgca 1736525
to top
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 254     gtcgagcgacagcgagcgca 273
               ||||||||||||||||||||
Sbjct: 3071383 gtcgagcgacagcgagcgca 3071402
to top
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 254     gtcgagcgacagcgagcgca 273
               ||||||||||||||||||||
Sbjct: 2220100 gtcgagcgacagcgagcgca 2220119
to top
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 254     gtcgagcgacagcgagcgca 273
               ||||||||||||||||||||
Sbjct: 2838928 gtcgagcgacagcgagcgca 2838947


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,840,325
Number of Sequences: 3902068
Number of extensions: 1840325
Number of successful extensions: 28098
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27933
Number of HSP's gapped (non-prelim): 163
length of query: 483
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 461
effective length of database: 17,147,199,772
effective search space: 7904859094892
effective search space used: 7904859094892
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top