Clone Name | rbasd18b14 |
---|---|
Clone Library Name | barley_pub |
>gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055D24 map C535, complete sequence Length = 174759 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 473 ccgagcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 525 |||||||| |||||||| ||||||| ||| | ||||||||||||||| ||||| Sbjct: 167463 ccgagcccttgcgcgagcacgaacacgtcatagccatggaggtgcatcgggtt 167411 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 550 gctctggaacacgatctccaccg 572 ||||||||||||||||||||||| Sbjct: 167386 gctctggaacacgatctccaccg 167364
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 473 ccgagcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 525 |||||||| |||||||| ||||||| ||| | ||||||||||||||| ||||| Sbjct: 8850764 ccgagcccttgcgcgagcacgaacacgtcatagccatggaggtgcatcgggtt 8850816 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Minus Query: 476 agcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 525 ||||||||||| |||| ||| | ||| | ||||||||||||||||||||| Sbjct: 24578395 agcccctgcgcaaggaggaagacgtcatagccatggaggtgcatggggtt 24578346 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 550 gctctggaacacgatctccaccg 572 ||||||||||||||||||||||| Sbjct: 8850841 gctctggaacacgatctccaccg 8850863 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 505 gccatggaggtgcatggggtt 525 ||||||||||||||||||||| Sbjct: 24569674 gccatggaggtgcatggggtt 24569654
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 473 ccgagcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 525 |||||||| |||||||| ||||||| ||| | ||||||||||||||| ||||| Sbjct: 8922427 ccgagcccttgcgcgagcacgaacacgtcatagccatggaggtgcatcgggtt 8922479 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Minus Query: 476 agcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 525 ||||||||||| |||| ||| | ||| | ||||||||||||||||||||| Sbjct: 24890065 agcccctgcgcaaggaggaagacgtcatagccatggaggtgcatggggtt 24890016 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 550 gctctggaacacgatctccaccg 572 ||||||||||||||||||||||| Sbjct: 8922504 gctctggaacacgatctccaccg 8922526 Score = 42.1 bits (21), Expect = 2.6 Identities = 45/53 (84%) Strand = Plus / Minus Query: 473 ccgagcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 525 ||||||||||| || |||| ||| | || | ||||||||||||||||||||| Sbjct: 24881376 ccgagcccctgtgcaaggaggaagacatcatagccatggaggtgcatggggtt 24881324
>gb|AF132119.1|AF132119 Pinus taeda laccase (Lac1) mRNA, complete cds Length = 2048 Score = 56.0 bits (28), Expect = 2e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 329 aaatgacagtgcaggaaccacacacctggatt 360 ||||||||||||| |||||||||||||||||| Sbjct: 1680 aaatgacagtgcatgaaccacacacctggatt 1649
>gb|AC113249.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0041L19, complete sequence Length = 155086 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Minus Query: 476 agcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 525 ||||||||||| |||| ||| | ||| | ||||||||||||||||||||| Sbjct: 55297 agcccctgcgcaaggaggaagacgtcatagccatggaggtgcatggggtt 55248 Score = 42.1 bits (21), Expect = 2.6 Identities = 45/53 (84%) Strand = Plus / Minus Query: 473 ccgagcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 525 ||||||||||| || |||| ||| | || | ||||||||||||||||||||| Sbjct: 46608 ccgagcccctgtgcaaggaggaagacatcatagccatggaggtgcatggggtt 46556
>dbj|AK066963.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093P21, full insert sequence Length = 2095 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Minus Query: 476 agcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 525 ||||||||||| |||| ||| | ||| | ||||||||||||||||||||| Sbjct: 1552 agcccctgcgcaaggaggaagacgtcatagccatggaggtgcatggggtt 1503
>gb|AF465469.1| Lolium perenne laccase LAC2-1 mRNA, complete cds Length = 2056 Score = 50.1 bits (25), Expect = 0.011 Identities = 37/41 (90%) Strand = Plus / Minus Query: 479 ccctgcgcgaggacgaacatgtcctggccatggaggtgcat 519 ||||| ||||||||||| | ||| ||||||||||||||||| Sbjct: 1483 ccctgggcgaggacgaagaagtcgtggccatggaggtgcat 1443
>ref|XM_467807.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1740 Score = 46.1 bits (23), Expect = 0.16 Identities = 32/35 (91%) Strand = Plus / Minus Query: 326 tcaaaatgacagtgcaggaaccacacacctggatt 360 |||||||| || |||| |||||||||||||||||| Sbjct: 1637 tcaaaatggcaatgcatgaaccacacacctggatt 1603
>ref|NM_196671.1| Oryza sativa (japonica cultivar-group) putative diphenol oxidase (OSJNBb0040I11.7), mRNA Length = 1404 Score = 46.1 bits (23), Expect = 0.16 Identities = 32/35 (91%) Strand = Plus / Minus Query: 326 tcaaaatgacagtgcaggaaccacacacctggatt 360 |||||||| || |||| |||||||||||||||||| Sbjct: 1301 tcaaaatggcaatgcatgaaccacacacctggatt 1267
>ref|NM_193864.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1800 Score = 46.1 bits (23), Expect = 0.16 Identities = 32/35 (91%) Strand = Plus / Minus Query: 326 tcaaaatgacagtgcaggaaccacacacctggatt 360 |||||||| || |||| |||||||||||||||||| Sbjct: 1697 tcaaaatggcaatgcatgaaccacacacctggatt 1663
>ref|NM_101674.3| Arabidopsis thaliana copper ion binding AT1G18140 mRNA, complete cds Length = 1931 Score = 44.1 bits (22), Expect = 0.65 Identities = 28/30 (93%) Strand = Plus / Minus Query: 413 ttcctcaccggcggatccaccaggttgtac 442 |||||| ||||||||||||||| ||||||| Sbjct: 1599 ttcctctccggcggatccaccaagttgtac 1570
>gb|AF465470.1| Lolium perenne laccase LAC5-4 mRNA, complete cds Length = 2156 Score = 44.1 bits (22), Expect = 0.65 Identities = 28/30 (93%) Strand = Plus / Minus Query: 544 caccgggctctggaacacgatctccaccgt 573 ||||||| |||||| ||||||||||||||| Sbjct: 1410 caccgggttctggagcacgatctccaccgt 1381
>gb|AC034107.5|T10F20 Sequence of BAC T10F20 from Arabidopsis thaliana chromosome 1, complete sequence Length = 81129 Score = 44.1 bits (22), Expect = 0.65 Identities = 28/30 (93%) Strand = Plus / Plus Query: 413 ttcctcaccggcggatccaccaggttgtac 442 |||||| ||||||||||||||| ||||||| Sbjct: 45254 ttcctctccggcggatccaccaagttgtac 45283
>gb|AC069551.4|AC069551 Genomic sequence for Arabidopsis thaliana BAC T10O22 from chromosome I, complete sequence Length = 92948 Score = 44.1 bits (22), Expect = 0.65 Identities = 28/30 (93%) Strand = Plus / Plus Query: 413 ttcctcaccggcggatccaccaggttgtac 442 |||||| ||||||||||||||| ||||||| Sbjct: 30558 ttcctctccggcggatccaccaagttgtac 30587
>gb|U73105.1|LTU73105 Liriodendron tulipifera high-pI laccase (LAC2-3) mRNA, complete cds Length = 2030 Score = 44.1 bits (22), Expect = 0.65 Identities = 25/26 (96%) Strand = Plus / Minus Query: 335 cagtgcaggaaccacacacctggatt 360 ||||||| |||||||||||||||||| Sbjct: 1714 cagtgcatgaaccacacacctggatt 1689
>ref|NM_190554.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1734 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 329 aaatgacagtgcaggaaccacacacctgg 357 ||||||||||||| |||||| |||||||| Sbjct: 1628 aaatgacagtgcatgaaccatacacctgg 1600
>ref|NM_192960.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1689 Score = 42.1 bits (21), Expect = 2.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 406 gacggtgttcctcaccggcggatccaccaggttgtac 442 ||||||||||||| ||||||| || || ||||||||| Sbjct: 1506 gacggtgttcctctccggcgggtcgacgaggttgtac 1470
>gb|AC016814.14| Mus musculus chromosome 1, clone RP23-2M16, complete sequence Length = 247961 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 aggctttattcaaacaactgt 155 ||||||||||||||||||||| Sbjct: 60267 aggctttattcaaacaactgt 60287
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 406 gacggtgttcctcaccggcgg 426 ||||||||||||||||||||| Sbjct: 1591850 gacggtgttcctcaccggcgg 1591830
>ref|XM_389822.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09646.1) partial mRNA Length = 1719 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 332 tgacagtgcaggaaccacacacctggatt 360 ||||||||||||| ||| ||||||||||| Sbjct: 1550 tgacagtgcaggagccatacacctggatt 1522
>emb|Z47068.1|CEF15G9 Caenorhabditis elegans Cosmid F15G9, complete sequence Length = 41345 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 agtaatacatttcctttctgc 41 ||||||||||||||||||||| Sbjct: 18161 agtaatacatttcctttctgc 18141
>emb|CR847808.6| Zebrafish DNA sequence from clone CH211-151I8 in linkage group 22, complete sequence Length = 147994 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 354 ctggatttttggtgacaaatc 374 ||||||||||||||||||||| Sbjct: 74247 ctggatttttggtgacaaatc 74267
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 406 gacggtgttcctcaccggcgg 426 ||||||||||||||||||||| Sbjct: 1974406 gacggtgttcctcaccggcgg 1974386
>gb|AE011767.1| Xanthomonas axonopodis pv. citri str. 306, section 145 of 469 of the complete genome Length = 11162 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 406 gacggtgttcctcaccggcgg 426 ||||||||||||||||||||| Sbjct: 4020 gacggtgttcctcaccggcgg 4000
>ref|NM_001029411.1| Caenorhabditis elegans High Incidence of Males (increased X chromosome loss) family member (him-4) (him-4) mRNA, complete cds Length = 15597 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 agtaatacatttcctttctgc 41 ||||||||||||||||||||| Sbjct: 2498 agtaatacatttcctttctgc 2478
>ref|NM_077234.3| Caenorhabditis elegans High Incidence of Males (increased X chromosome loss) family member (him-4) (him-4) mRNA, complete cds Length = 15712 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 agtaatacatttcctttctgc 41 ||||||||||||||||||||| Sbjct: 2498 agtaatacatttcctttctgc 2478
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 406 gacggtgttcctcaccggcggatccaccaggttgtac 442 ||||||||||||| ||||||| || || ||||||||| Sbjct: 25435486 gacggtgttcctctccggcgggtcgacgaggttgtac 25435522
>gb|AF074901.1|AF074901 Caenorhabditis elegans hemicentin precursor (him-4) mRNA, complete cds Length = 15597 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 agtaatacatttcctttctgc 41 ||||||||||||||||||||| Sbjct: 2498 agtaatacatttcctttctgc 2478
>gb|AC130277.6| Mus musculus chromosome 1, clone RP24-387G4, complete sequence Length = 125118 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 aggctttattcaaacaactgt 155 ||||||||||||||||||||| Sbjct: 833 aggctttattcaaacaactgt 813
>dbj|AP004317.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0663E10 Length = 162297 Score = 42.1 bits (21), Expect = 2.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 406 gacggtgttcctcaccggcggatccaccaggttgtac 442 ||||||||||||| ||||||| || || ||||||||| Sbjct: 125486 gacggtgttcctctccggcgggtcgacgaggttgtac 125522
>dbj|AK103094.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118K21, full insert sequence Length = 2065 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 505 gccatggaggtgcatggggtt 525 ||||||||||||||||||||| Sbjct: 1549 gccatggaggtgcatggggtt 1529
>dbj|AK068901.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170B10, full insert sequence Length = 2066 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 329 aaatgacagtgcaggaaccacacacctgg 357 ||||||||||||| |||||| |||||||| Sbjct: 1744 aaatgacagtgcatgaaccatacacctgg 1716
>dbj|AK059101.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-D01, full insert sequence Length = 644 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 329 aaatgacagtgcaggaaccacacacctgg 357 ||||||||||||| |||||| |||||||| Sbjct: 320 aaatgacagtgcatgaaccatacacctgg 292
>gb|AF047697.1|AF047697 Oryza sativa putative high-pI laccase mRNA, partial cds Length = 1874 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 329 aaatgacagtgcaggaaccacacacctgg 357 ||||||||||||| |||||| |||||||| Sbjct: 1550 aaatgacagtgcatgaaccatacacctgg 1522
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 406 gacggtgttcctcaccggcgg 426 ||||||||||||||||||||| Sbjct: 1996453 gacggtgttcctcaccggcgg 1996433 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,899,265 Number of Sequences: 3902068 Number of extensions: 4899265 Number of successful extensions: 92096 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91788 Number of HSP's gapped (non-prelim): 306 length of query: 742 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 719 effective length of database: 17,143,297,704 effective search space: 12326031049176 effective search space used: 12326031049176 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)