ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18b13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473075.1| Oryza sativa (japonica cultivar-group), predic... 74 4e-10
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
3dbj|AK105091.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 4e-10
4dbj|AK101695.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 4e-10
5dbj|AK099404.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 4e-10
6emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 74 4e-10
7gb|AY103901.1| Zea mays PCO142939 mRNA sequence 68 2e-08
8ref|XM_507496.1| PREDICTED Oryza sativa (japonica cultivar-group... 54 3e-04
9ref|XM_506866.1| PREDICTED Oryza sativa (japonica cultivar-group... 54 3e-04
10ref|XM_466700.1| Oryza sativa (japonica cultivar-group), mRNA 54 3e-04
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
12dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
13dbj|AK098974.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
14dbj|AK098853.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
15dbj|AK065051.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
16ref|NM_189191.1| Oryza sativa (japonica cultivar-group), predic... 40 5.1
17gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 5.1
18ref|XM_777900.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 5.1
19emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 5.1
20dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 40 5.1
21gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 5.1
22dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
23dbj|AP003578.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
24dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
25gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 5.1 
>ref|XM_473075.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1746

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 121/149 (81%)
 Strand = Plus / Minus

                                                                        
Query: 194  ttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgagtcg 253
            ||||| ||||| |||| ||| |||||||||| |||    || ||||||||||| || || 
Sbjct: 1721 ttgggcagggcagccaactggagcttcttgatctcaatcgcggtcaccttgcaggactcc 1662

                                                                        
Query: 254  agcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcctgcgttcgacacc 313
            || ||||  || | ||||||||| || ||| ||||||||||||| || |  |||||||||
Sbjct: 1661 agagacaaggacctcaggttctggagtggcttcagatggtggagcccagaattcgacacc 1602

                                         
Query: 314  cgagagtacgacaggttcagcgagaccaa 342
            ||||||| ||||| |||||| ||||||||
Sbjct: 1601 cgagagttcgacacgttcagggagaccaa 1573
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 121/149 (81%)
 Strand = Plus / Plus

                                                                            
Query: 194      ttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgagtcg 253
                ||||| ||||| |||| ||| |||||||||| |||    || ||||||||||| || || 
Sbjct: 25102330 ttgggcagggcagccaactggagcttcttgatctcaatcgcggtcaccttgcaggactcc 25102389

                                                                            
Query: 254      agcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcctgcgttcgacacc 313
                || ||||  || | ||||||||| || ||| ||||||||||||| || |  |||||||||
Sbjct: 25102390 agagacaaggacctcaggttctggagtggcttcagatggtggagcccagaattcgacacc 25102449

                                             
Query: 314      cgagagtacgacaggttcagcgagaccaa 342
                ||||||| ||||| |||||| ||||||||
Sbjct: 25102450 cgagagttcgacacgttcagggagaccaa 25102478
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>dbj|AK105091.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-F06, full
            insert sequence
          Length = 1431

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 121/149 (81%)
 Strand = Plus / Minus

                                                                        
Query: 194  ttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgagtcg 253
            ||||| ||||| |||| ||| |||||||||| |||    || ||||||||||| || || 
Sbjct: 1097 ttgggcagggcagccaactggagcttcttgatctcaatcgcggtcaccttgcaggactcc 1038

                                                                        
Query: 254  agcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcctgcgttcgacacc 313
            || ||||  || | ||||||||| || ||| ||||||||||||| || |  |||||||||
Sbjct: 1037 agagacaaggacctcaggttctggagtggcttcagatggtggagcccagaattcgacacc 978

                                         
Query: 314  cgagagtacgacaggttcagcgagaccaa 342
            ||||||| ||||| |||||| ||||||||
Sbjct: 977  cgagagttcgacacgttcagggagaccaa 949
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>dbj|AK101695.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033060B12, full
            insert sequence
          Length = 2265

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 121/149 (81%)
 Strand = Plus / Minus

                                                                        
Query: 194  ttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgagtcg 253
            ||||| ||||| |||| ||| |||||||||| |||    || ||||||||||| || || 
Sbjct: 1926 ttgggcagggcagccaactggagcttcttgatctcaatcgcggtcaccttgcaggactcc 1867

                                                                        
Query: 254  agcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcctgcgttcgacacc 313
            || ||||  || | ||||||||| || ||| ||||||||||||| || |  |||||||||
Sbjct: 1866 agagacaaggacctcaggttctggagtggcttcagatggtggagcccagaattcgacacc 1807

                                         
Query: 314  cgagagtacgacaggttcagcgagaccaa 342
            ||||||| ||||| |||||| ||||||||
Sbjct: 1806 cgagagttcgacacgttcagggagaccaa 1778
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>dbj|AK099404.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001H05, full
            insert sequence
          Length = 2375

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 121/149 (81%)
 Strand = Plus / Minus

                                                                        
Query: 194  ttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgagtcg 253
            ||||| ||||| |||| ||| |||||||||| |||    || ||||||||||| || || 
Sbjct: 2032 ttgggcagggcagccaactggagcttcttgatctcaatcgcggtcaccttgcaggactcc 1973

                                                                        
Query: 254  agcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcctgcgttcgacacc 313
            || ||||  || | ||||||||| || ||| ||||||||||||| || |  |||||||||
Sbjct: 1972 agagacaaggacctcaggttctggagtggcttcagatggtggagcccagaattcgacacc 1913

                                         
Query: 314  cgagagtacgacaggttcagcgagaccaa 342
            ||||||| ||||| |||||| ||||||||
Sbjct: 1912 cgagagttcgacacgttcagggagaccaa 1884
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>emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0014K14,
             complete sequence
          Length = 150187

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 121/149 (81%)
 Strand = Plus / Plus

                                                                         
Query: 194   ttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgagtcg 253
             ||||| ||||| |||| ||| |||||||||| |||    || ||||||||||| || || 
Sbjct: 49757 ttgggcagggcagccaactggagcttcttgatctcaatcgcggtcaccttgcaggactcc 49816

                                                                         
Query: 254   agcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcctgcgttcgacacc 313
             || ||||  || | ||||||||| || ||| ||||||||||||| || |  |||||||||
Sbjct: 49817 agagacaaggacctcaggttctggagtggcttcagatggtggagcccagaattcgacacc 49876

                                          
Query: 314   cgagagtacgacaggttcagcgagaccaa 342
             ||||||| ||||| |||||| ||||||||
Sbjct: 49877 cgagagttcgacacgttcagggagaccaa 49905
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>gb|AY103901.1| Zea mays PCO142939 mRNA sequence
          Length = 1490

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 91/110 (82%)
 Strand = Plus / Minus

                                                                        
Query: 191  aggttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgag 250
            ||||||||||||||| ||||| | ||||| |  | |||||  ||||||||| |||| || 
Sbjct: 1343 aggttggggagggcgaccagccggagcttatccatctcgcttgccgtcaccctgcaggac 1284

                                                              
Query: 251  tcgagcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcc 300
            || || || || ||||||||||||||||||||  |||| |||||||||||
Sbjct: 1283 tccagggatagggagcgcaggttctgcagcggtttcaggtggtggaggcc 1234
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>ref|XM_507496.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1004_A05.39 mRNA
          Length = 2521

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 90/111 (81%)
 Strand = Plus / Minus

                                                                        
Query: 169  ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 228
            |||||| || || ||||||| ||||||||||||  | | |  ||| |||||||| |||||
Sbjct: 2123 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 2064

                                                               
Query: 229  gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcag 279
             |  | ||| ||| |||| || || ||||||||||||||||||||||||||
Sbjct: 2063 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcag 2013
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>ref|XM_506866.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1004_A05.39 mRNA
          Length = 2538

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 90/111 (81%)
 Strand = Plus / Minus

                                                                        
Query: 169  ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 228
            |||||| || || ||||||| ||||||||||||  | | |  ||| |||||||| |||||
Sbjct: 2080 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 2021

                                                               
Query: 229  gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcag 279
             |  | ||| ||| |||| || || ||||||||||||||||||||||||||
Sbjct: 2020 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcag 1970
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>ref|XM_466700.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2507

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 90/111 (81%)
 Strand = Plus / Minus

                                                                        
Query: 169  ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 228
            |||||| || || ||||||| ||||||||||||  | | |  ||| |||||||| |||||
Sbjct: 2029 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 1970

                                                               
Query: 229  gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcag 279
             |  | ||| ||| |||| || || ||||||||||||||||||||||||||
Sbjct: 1969 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcag 1919
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 90/111 (81%)
 Strand = Plus / Plus

                                                                            
Query: 169      ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 228
                |||||| || || ||||||| ||||||||||||  | | |  ||| |||||||| |||||
Sbjct: 24186714 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 24186773

                                                                   
Query: 229      gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcag 279
                 |  | ||| ||| |||| || || ||||||||||||||||||||||||||
Sbjct: 24186774 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcag 24186824
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>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1004_A05
          Length = 174290

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 90/111 (81%)
 Strand = Plus / Plus

                                                                          
Query: 169    ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 228
              |||||| || || ||||||| ||||||||||||  | | |  ||| |||||||| |||||
Sbjct: 145455 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 145514

                                                                 
Query: 229    gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcag 279
               |  | ||| ||| |||| || || ||||||||||||||||||||||||||
Sbjct: 145515 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcag 145565
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>dbj|AK098974.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091J20, full
            insert sequence
          Length = 2522

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 90/111 (81%)
 Strand = Plus / Minus

                                                                        
Query: 169  ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 228
            |||||| || || ||||||| ||||||||||||  | | |  ||| |||||||| |||||
Sbjct: 2123 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 2064

                                                               
Query: 229  gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcag 279
             |  | ||| ||| |||| || || ||||||||||||||||||||||||||
Sbjct: 2063 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcag 2013
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>dbj|AK098853.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000H15, full
            insert sequence
          Length = 2538

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 90/111 (81%)
 Strand = Plus / Minus

                                                                        
Query: 169  ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 228
            |||||| || || ||||||| ||||||||||||  | | |  ||| |||||||| |||||
Sbjct: 2080 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 2021

                                                               
Query: 229  gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcag 279
             |  | ||| ||| |||| || || ||||||||||||||||||||||||||
Sbjct: 2020 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcag 1970
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>dbj|AK065051.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001I18, full
            insert sequence
          Length = 2507

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 90/111 (81%)
 Strand = Plus / Minus

                                                                        
Query: 169  ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 228
            |||||| || || ||||||| ||||||||||||  | | |  ||| |||||||| |||||
Sbjct: 2029 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 1970

                                                               
Query: 229  gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcag 279
             |  | ||| ||| |||| || || ||||||||||||||||||||||||||
Sbjct: 1969 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcag 1919
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>ref|NM_189191.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3582

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 275  tgcagcggcctcagatggtg 294
            ||||||||||||||||||||
Sbjct: 1671 tgcagcggcctcagatggtg 1652
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 250     gtcgagcgacagcgagcgca 269
               ||||||||||||||||||||
Sbjct: 1736506 gtcgagcgacagcgagcgca 1736525
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>ref|XM_777900.1| PREDICTED: Strongylocentrotus purpuratus similar to dentin
            sialophosphoprotein preproprotein (LOC577686), mRNA
          Length = 3507

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 160  accggaagactactccggac 179
            ||||||||||||||||||||
Sbjct: 3236 accggaagactactccggac 3255
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 250     gtcgagcgacagcgagcgca 269
               ||||||||||||||||||||
Sbjct: 3071383 gtcgagcgacagcgagcgca 3071402
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>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011
          Length = 2505489

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 36      tcagtctatcatcagatcaa 55
               ||||||||||||||||||||
Sbjct: 2288964 tcagtctatcatcagatcaa 2288983
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 250     gtcgagcgacagcgagcgca 269
               ||||||||||||||||||||
Sbjct: 2220100 gtcgagcgacagcgagcgca 2220119
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 275      tgcagcggcctcagatggtg 294
                ||||||||||||||||||||
Sbjct: 11028293 tgcagcggcctcagatggtg 11028312
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>dbj|AP003578.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0682B08
          Length = 138376

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 275   tgcagcggcctcagatggtg 294
             ||||||||||||||||||||
Sbjct: 57175 tgcagcggcctcagatggtg 57194
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>dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0487H02
          Length = 145491

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 275    tgcagcggcctcagatggtg 294
              ||||||||||||||||||||
Sbjct: 131135 tgcagcggcctcagatggtg 131154
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 250     gtcgagcgacagcgagcgca 269
               ||||||||||||||||||||
Sbjct: 2838928 gtcgagcgacagcgagcgca 2838947


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,923,482
Number of Sequences: 3902068
Number of extensions: 1923482
Number of successful extensions: 29701
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29510
Number of HSP's gapped (non-prelim): 190
length of query: 380
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 358
effective length of database: 17,147,199,772
effective search space: 6138697518376
effective search space used: 6138697518376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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