ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y1280_ARATH (O80543) Protein At1g22800 179 6e-45
2VIT_ONCMY (Q92093) Vitellogenin precursor (VTG) [Contains: Lipov... 32 2.7
3TREF_SHIFL (Q83PS8) Cytoplasmic trehalase (EC 3.2.1.28) (Alpha,a... 32 2.7
4TREF_ECOLI (P62601) Cytoplasmic trehalase (EC 3.2.1.28) (Alpha,a... 32 2.7
5TREF_ECOL6 (Q8FCI4) Cytoplasmic trehalase (EC 3.2.1.28) (Alpha,a... 32 2.7
6TREF_ECO57 (P62602) Cytoplasmic trehalase (EC 3.2.1.28) (Alpha,a... 32 2.7
7MG101_DEBHA (Q6BN05) Mitochondrial genome maintenance protein MG... 30 6.0
8MG101_CANAL (Q5AI97) Mitochondrial genome maintenance protein MG... 30 7.8

>Y1280_ARATH (O80543) Protein At1g22800|
          Length = 355

 Score =  179 bits (455), Expect = 6e-45
 Identities = 86/114 (75%), Positives = 99/114 (86%)
 Frame = -1

Query: 738 RDAGNLLSRAGFALPGVDVDRYTVKYNSALELVEHLRAMAETNALFQRSPILKRDTALAT 559
           RDAGNLL+RAGF+LPGVDVD Y VKY  A++L+EHLRAM ETNAL +R+ IL R+TA+AT
Sbjct: 239 RDAGNLLTRAGFSLPGVDVDEYVVKYKRAMDLIEHLRAMGETNALLERNKILNRETAVAT 298

Query: 558 AAIYQSMFGLEDGTIPATFQVIYMTGWKEHSSQQKPKRRGSATVSFGDIRKQFG 397
           AAIY SMF  EDGTIPATFQVIYMTGW+EHSS  + KRRGSATVSF D++KQFG
Sbjct: 299 AAIYDSMFATEDGTIPATFQVIYMTGWREHSSHPQAKRRGSATVSFTDLQKQFG 352



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>VIT_ONCMY (Q92093) Vitellogenin precursor (VTG) [Contains: Lipovitellin I|
            (LVI); Phosvitin (PV); Lipovitellin II (LVII)]
          Length = 1659

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
 Frame = +1

Query: 181  QGMSRSTQMHRRRIVSDARGASANFGGN---QHSTLFLQMGSLGSP-----------KLC 318
            QG++RSTQ  R ++ S    ++A+F G+       L+  + S   P            +C
Sbjct: 934  QGVARSTQQSRDKLTSMIADSAASFAGSLSRSSEILYSDLPSNFKPIIKAIVVHLEETIC 993

Query: 319  CEQLGVFFSFLKRCFHIR*SSSVLVGTKLF 408
             E+LGV     K CF     S+  +   LF
Sbjct: 994  VERLGV-----KACFEFTSESAAFIRNTLF 1018



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>TREF_SHIFL (Q83PS8) Cytoplasmic trehalase (EC 3.2.1.28)|
           (Alpha,alpha-trehalase) (Alpha,alpha-trehalose
           glucohydrolase)
          Length = 549

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -1

Query: 738 RDAGNLLSRAGFALPGVDVDRYTVKYNSALELVEHLRAMAETNALFQRSPILKRD 574
           RD G L S        +D++ +  K  SA+  +  L+   ET ALF++    +RD
Sbjct: 333 RDTGRLASIRTTQFIPIDLNAFLFKLESAIANISALKGEKETEALFRQKASARRD 387



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>TREF_ECOLI (P62601) Cytoplasmic trehalase (EC 3.2.1.28)|
           (Alpha,alpha-trehalase) (Alpha,alpha-trehalose
           glucohydrolase)
          Length = 549

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -1

Query: 738 RDAGNLLSRAGFALPGVDVDRYTVKYNSALELVEHLRAMAETNALFQRSPILKRD 574
           RD G L S        +D++ +  K  SA+  +  L+   ET ALF++    +RD
Sbjct: 333 RDTGRLASIRTTQFIPIDLNAFLFKLESAIANISALKGEKETEALFRQKASARRD 387



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>TREF_ECOL6 (Q8FCI4) Cytoplasmic trehalase (EC 3.2.1.28)|
           (Alpha,alpha-trehalase) (Alpha,alpha-trehalose
           glucohydrolase)
          Length = 549

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -1

Query: 738 RDAGNLLSRAGFALPGVDVDRYTVKYNSALELVEHLRAMAETNALFQRSPILKRD 574
           RD G L S        +D++ +  K  SA+  +  L+   ET ALF++    +RD
Sbjct: 333 RDTGRLASIRTTQFIPIDLNAFLFKLESAIANISALKGEKETEALFRQKASARRD 387



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>TREF_ECO57 (P62602) Cytoplasmic trehalase (EC 3.2.1.28)|
           (Alpha,alpha-trehalase) (Alpha,alpha-trehalose
           glucohydrolase)
          Length = 549

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -1

Query: 738 RDAGNLLSRAGFALPGVDVDRYTVKYNSALELVEHLRAMAETNALFQRSPILKRD 574
           RD G L S        +D++ +  K  SA+  +  L+   ET ALF++    +RD
Sbjct: 333 RDTGRLASIRTTQFIPIDLNAFLFKLESAIANISALKGEKETEALFRQKASARRD 387



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>MG101_DEBHA (Q6BN05) Mitochondrial genome maintenance protein MGM101,|
           mitochondrial precursor
          Length = 275

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 217 RIVSDARGASANFGGNQHSTLFLQMGSLGSPKLCCEQLGV 336
           R+VS ARG    FGG++  T  L+     +   CC+ LG+
Sbjct: 186 RLVSVARGEQDYFGGDEKITTALEGCKSNALMRCCKDLGI 225



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>MG101_CANAL (Q5AI97) Mitochondrial genome maintenance protein MGM101,|
           mitochondrial precursor
          Length = 275

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 217 RIVSDARGASANFGGNQHSTLFLQMGSLGSPKLCCEQLGV 336
           R+VS ARG    FGG +  T  L+     +   CC+ LG+
Sbjct: 186 RLVSIARGEQDYFGGEEKLTTALEGCKSNALMRCCKDLGI 225


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,863,044
Number of Sequences: 219361
Number of extensions: 2460203
Number of successful extensions: 6240
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6239
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7706249192
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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