ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_196928.1| Oryza sativa (japonica cultivar-group) hypothet... 52 0.002
2gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 geno... 52 0.002
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
4dbj|AK108440.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
6emb|AL929181.2| Mouse DNA sequence from clone RP23-391E20 on chr... 44 0.38
7dbj|AP007295.1| Lotus japonicus genomic DNA, clone:LjT33A04, TM0... 42 1.5
8dbj|AP007282.1| Lotus japonicus genomic DNA, clone:LjT18J11, TM0... 42 1.5
9dbj|AP007265.1| Lotus japonicus genomic DNA, chromosome 3, clone... 42 1.5
10dbj|AP006736.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 1.5
11dbj|AP006635.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 1.5
12dbj|AP006401.1| Lotus japonicus genomic DNA, chromosome 4, clone... 42 1.5
13dbj|AP006391.1| Lotus japonicus genomic DNA, chromosome 4, clone... 42 1.5
14dbj|AP006143.1| Lotus japonicus genomic DNA, chromosome 2, clone... 42 1.5
15dbj|AP006118.1| Lotus japonicus genomic DNA, chromosome 2, clone... 42 1.5
16dbj|AP006085.1| Lotus japonicus genomic DNA, chromosome 4, clone... 42 1.5
17dbj|AP004894.1| Lotus japonicus genomic DNA, chromosome 5, clone... 42 1.5
18dbj|AP004576.1| Lotus japonicus genomic DNA, chromosome 2, clone... 42 1.5
19gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 40 5.9
20gb|AC093084.4| Homo sapiens BAC clone RP11-699O7 from 2, complet... 40 5.9

>ref|NM_196928.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0006L06.25), mRNA
          Length = 270

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 240 tcgtcgaagttttgggagtagctcttcaggtcgnacccgaa 280
           |||||||||||  |||||||||||| ||||||| |||||||
Sbjct: 233 tcgtcgaagttgcgggagtagctctgcaggtcgtacccgaa 193



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>gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 genomic sequence, complete
             sequence
          Length = 162339

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 240   tcgtcgaagttttgggagtagctcttcaggtcgnacccgaa 280
             |||||||||||  |||||||||||| ||||||| |||||||
Sbjct: 66521 tcgtcgaagttgcgggagtagctctgcaggtcgtacccgaa 66481



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                         
Query: 240      tcgtcgaagttttgggagtagctcttcaggtcgnacccgaa 280
                |||||||||||  |||||||||||| ||||||| |||||||
Sbjct: 16722004 tcgtcgaagttgcgggagtagctctgcaggtcgtacccgaa 16721964



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>dbj|AK108440.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-B10, full
           insert sequence
          Length = 877

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 240 tcgtcgaagttttgggagtagctcttcaggtcgnacccgaa 280
           |||||||||||  |||||||||||| ||||||| |||||||
Sbjct: 537 tcgtcgaagttgcgggagtagctctgcaggtcgtacccgaa 497



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                         
Query: 240      tcgtcgaagttttgggagtagctcttcaggtcgnacccgaa 280
                |||||||||||  |||||||||||| ||||||| |||||||
Sbjct: 16731044 tcgtcgaagttgcgggagtagctctgcaggtcgtacccgaa 16731004



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>emb|AL929181.2| Mouse DNA sequence from clone RP23-391E20 on chromosome 4 Contains a
             malate dehydrogenase, mitochondrial (Mor1) pseudogene and
             the 3' end of the Ptprd gene for protein tyrosine
             phosphatase receptor type D, complete sequence
          Length = 126280

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 252   tgggagtagctcttcaggtcgnacc 276
             ||||||||||||||||||||| |||
Sbjct: 74973 tgggagtagctcttcaggtcggacc 74949



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>dbj|AP007295.1| Lotus japonicus genomic DNA, clone:LjT33A04, TM0130, complete sequence
          Length = 122684

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 182   gtccggccgggcggtaagtcaaatcgatg 210
             |||| ||||||| ||||||||||||||||
Sbjct: 94704 gtcctgccgggctgtaagtcaaatcgatg 94732



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>dbj|AP007282.1| Lotus japonicus genomic DNA, clone:LjT18J11, TM0184a, complete sequence
          Length = 81986

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 182   gtccggccgggcggtaagtcaaatcgatg 210
             |||| ||||||| ||||||||||||||||
Sbjct: 20565 gtcctgccgggctgtaagtcaaatcgatg 20537



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>dbj|AP007265.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT11L01, TM1658,
            complete sequence
          Length = 99089

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 182  gtccggccgggcggtaagtcaaatcgatg 210
            |||| ||||||| ||||||||||||||||
Sbjct: 5328 gtcctgccgggctgtaagtcaaatcgatg 5300



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>dbj|AP006736.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45I15, TM1494,
             complete sequence
          Length = 114162

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 182   gtccggccgggcggtaagtcaaatcgatg 210
             |||| ||||||| ||||||||||||||||
Sbjct: 22209 gtcctgccgggctgtaagtcaaatcgatg 22181



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>dbj|AP006635.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT02F07, TM0101,
             complete sequence
          Length = 114487

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 182   gtccggccgggcggtaagtcaaatcgatg 210
             |||| ||||||| ||||||||||||||||
Sbjct: 70537 gtcctgccgggctgtaagtcaaatcgatg 70509



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>dbj|AP006401.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT18E13, TM0283,
              complete sequence
          Length = 112721

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 182    gtccggccgggcggtaagtcaaatcgatg 210
              |||| ||||||| ||||||||||||||||
Sbjct: 112293 gtcctgccgggctgtaagtcaaatcgatg 112265



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>dbj|AP006391.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT09E08, TM0265,
            complete sequence
          Length = 100864

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 182  gtccggccgggcggtaagtcaaatcgatg 210
            |||| ||||||| ||||||||||||||||
Sbjct: 9159 gtcctgccgggctgtaagtcaaatcgatg 9131



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>dbj|AP006143.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT16L07, TM0254,
             complete sequence
          Length = 118592

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 182   gtccggccgggcggtaagtcaaatcgatg 210
             |||| ||||||| ||||||||||||||||
Sbjct: 32085 gtcctgccgggctgtaagtcaaatcgatg 32113



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>dbj|AP006118.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT47H13, TM0201,
             complete sequence
          Length = 79882

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 182   gtccggccgggcggtaagtcaaatcgatg 210
             |||| ||||||| ||||||||||||||||
Sbjct: 59132 gtcctgccgggctgtaagtcaaatcgatg 59160



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>dbj|AP006085.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT28L24, TM0128,
             complete sequence
          Length = 98492

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 182   gtccggccgggcggtaagtcaaatcgatg 210
             |||| ||||||| ||||||||||||||||
Sbjct: 86155 gtcctgccgggctgtaagtcaaatcgatg 86127



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>dbj|AP004894.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT17D01, TM0024,
             complete sequence
          Length = 80930

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 182   gtccggccgggcggtaagtcaaatcgatg 210
             |||| ||||||| ||||||||||||||||
Sbjct: 25420 gtcctgccgggctgtaagtcaaatcgatg 25448



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>dbj|AP004576.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01N11, TM0177,
             complete sequence
          Length = 133589

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 182   gtccggccgggcggtaagtcaaatcgatg 210
             |||| ||||||| ||||||||||||||||
Sbjct: 63033 gtcctgccgggctgtaagtcaaatcgatg 63061



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>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 229     gggcgaggccatcgtcgaagtttt 252
               |||||||||||||||||| |||||
Sbjct: 2463320 gggcgaggccatcgtcgaggtttt 2463297



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>gb|AC093084.4| Homo sapiens BAC clone RP11-699O7 from 2, complete sequence
          Length = 167960

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 53     tttcagactttcaacactaagcaa 76
              |||||||||||||||||| |||||
Sbjct: 161034 tttcagactttcaacactgagcaa 161057


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,979,862
Number of Sequences: 3902068
Number of extensions: 1979862
Number of successful extensions: 28790
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28711
Number of HSP's gapped (non-prelim): 79
length of query: 436
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 414
effective length of database: 17,147,199,772
effective search space: 7098940705608
effective search space used: 7098940705608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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