Clone Name | rbasd18b06 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_196928.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0006L06.25), mRNA Length = 270 Score = 52.0 bits (26), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Minus Query: 240 tcgtcgaagttttgggagtagctcttcaggtcgnacccgaa 280 ||||||||||| |||||||||||| ||||||| ||||||| Sbjct: 233 tcgtcgaagttgcgggagtagctctgcaggtcgtacccgaa 193
>gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 genomic sequence, complete sequence Length = 162339 Score = 52.0 bits (26), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Minus Query: 240 tcgtcgaagttttgggagtagctcttcaggtcgnacccgaa 280 ||||||||||| |||||||||||| ||||||| ||||||| Sbjct: 66521 tcgtcgaagttgcgggagtagctctgcaggtcgtacccgaa 66481
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 52.0 bits (26), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Minus Query: 240 tcgtcgaagttttgggagtagctcttcaggtcgnacccgaa 280 ||||||||||| |||||||||||| ||||||| ||||||| Sbjct: 16722004 tcgtcgaagttgcgggagtagctctgcaggtcgtacccgaa 16721964
>dbj|AK108440.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-B10, full insert sequence Length = 877 Score = 52.0 bits (26), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Minus Query: 240 tcgtcgaagttttgggagtagctcttcaggtcgnacccgaa 280 ||||||||||| |||||||||||| ||||||| ||||||| Sbjct: 537 tcgtcgaagttgcgggagtagctctgcaggtcgtacccgaa 497
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 52.0 bits (26), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Minus Query: 240 tcgtcgaagttttgggagtagctcttcaggtcgnacccgaa 280 ||||||||||| |||||||||||| ||||||| ||||||| Sbjct: 16731044 tcgtcgaagttgcgggagtagctctgcaggtcgtacccgaa 16731004
>emb|AL929181.2| Mouse DNA sequence from clone RP23-391E20 on chromosome 4 Contains a malate dehydrogenase, mitochondrial (Mor1) pseudogene and the 3' end of the Ptprd gene for protein tyrosine phosphatase receptor type D, complete sequence Length = 126280 Score = 44.1 bits (22), Expect = 0.38 Identities = 24/25 (96%) Strand = Plus / Minus Query: 252 tgggagtagctcttcaggtcgnacc 276 ||||||||||||||||||||| ||| Sbjct: 74973 tgggagtagctcttcaggtcggacc 74949
>dbj|AP007295.1| Lotus japonicus genomic DNA, clone:LjT33A04, TM0130, complete sequence Length = 122684 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 182 gtccggccgggcggtaagtcaaatcgatg 210 |||| ||||||| |||||||||||||||| Sbjct: 94704 gtcctgccgggctgtaagtcaaatcgatg 94732
>dbj|AP007282.1| Lotus japonicus genomic DNA, clone:LjT18J11, TM0184a, complete sequence Length = 81986 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 182 gtccggccgggcggtaagtcaaatcgatg 210 |||| ||||||| |||||||||||||||| Sbjct: 20565 gtcctgccgggctgtaagtcaaatcgatg 20537
>dbj|AP007265.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT11L01, TM1658, complete sequence Length = 99089 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 182 gtccggccgggcggtaagtcaaatcgatg 210 |||| ||||||| |||||||||||||||| Sbjct: 5328 gtcctgccgggctgtaagtcaaatcgatg 5300
>dbj|AP006736.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45I15, TM1494, complete sequence Length = 114162 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 182 gtccggccgggcggtaagtcaaatcgatg 210 |||| ||||||| |||||||||||||||| Sbjct: 22209 gtcctgccgggctgtaagtcaaatcgatg 22181
>dbj|AP006635.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT02F07, TM0101, complete sequence Length = 114487 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 182 gtccggccgggcggtaagtcaaatcgatg 210 |||| ||||||| |||||||||||||||| Sbjct: 70537 gtcctgccgggctgtaagtcaaatcgatg 70509
>dbj|AP006401.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT18E13, TM0283, complete sequence Length = 112721 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 182 gtccggccgggcggtaagtcaaatcgatg 210 |||| ||||||| |||||||||||||||| Sbjct: 112293 gtcctgccgggctgtaagtcaaatcgatg 112265
>dbj|AP006391.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT09E08, TM0265, complete sequence Length = 100864 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 182 gtccggccgggcggtaagtcaaatcgatg 210 |||| ||||||| |||||||||||||||| Sbjct: 9159 gtcctgccgggctgtaagtcaaatcgatg 9131
>dbj|AP006143.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT16L07, TM0254, complete sequence Length = 118592 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 182 gtccggccgggcggtaagtcaaatcgatg 210 |||| ||||||| |||||||||||||||| Sbjct: 32085 gtcctgccgggctgtaagtcaaatcgatg 32113
>dbj|AP006118.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT47H13, TM0201, complete sequence Length = 79882 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 182 gtccggccgggcggtaagtcaaatcgatg 210 |||| ||||||| |||||||||||||||| Sbjct: 59132 gtcctgccgggctgtaagtcaaatcgatg 59160
>dbj|AP006085.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT28L24, TM0128, complete sequence Length = 98492 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 182 gtccggccgggcggtaagtcaaatcgatg 210 |||| ||||||| |||||||||||||||| Sbjct: 86155 gtcctgccgggctgtaagtcaaatcgatg 86127
>dbj|AP004894.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT17D01, TM0024, complete sequence Length = 80930 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 182 gtccggccgggcggtaagtcaaatcgatg 210 |||| ||||||| |||||||||||||||| Sbjct: 25420 gtcctgccgggctgtaagtcaaatcgatg 25448
>dbj|AP004576.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01N11, TM0177, complete sequence Length = 133589 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 182 gtccggccgggcggtaagtcaaatcgatg 210 |||| ||||||| |||||||||||||||| Sbjct: 63033 gtcctgccgggctgtaagtcaaatcgatg 63061
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 229 gggcgaggccatcgtcgaagtttt 252 |||||||||||||||||| ||||| Sbjct: 2463320 gggcgaggccatcgtcgaggtttt 2463297
>gb|AC093084.4| Homo sapiens BAC clone RP11-699O7 from 2, complete sequence Length = 167960 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 53 tttcagactttcaacactaagcaa 76 |||||||||||||||||| ||||| Sbjct: 161034 tttcagactttcaacactgagcaa 161057 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,979,862 Number of Sequences: 3902068 Number of extensions: 1979862 Number of successful extensions: 28790 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28711 Number of HSP's gapped (non-prelim): 79 length of query: 436 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 414 effective length of database: 17,147,199,772 effective search space: 7098940705608 effective search space used: 7098940705608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)