ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17m04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197088.1| Oryza sativa (japonica cultivar-group) putative... 264 3e-67
2dbj|AK063937.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 3e-67
3gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 gen... 161 4e-36
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 161 4e-36
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 161 4e-36
6gb|AY106661.1| Zea mays PCO108608 mRNA sequence 113 7e-22
7emb|AL353896.12| Human DNA sequence from clone RP11-390J12 on ch... 46 0.15
8gb|AC080018.14|AC080018 Mus musculus 3 BAC RP23-200E11 (Roswell ... 46 0.15
9emb|AL606832.4| Mouse DNA sequence from clone RP23-346G22 on chr... 46 0.15
10emb|CR933436.1| Paramecium tetraurelia, Small GTPase rab, putati... 42 2.3
11emb|AJ719624.1| Gallus gallus mRNA for hypothetical protein, clo... 42 2.3
12ref|NM_001008440.1| Gallus gallus lymphocyte cytosolic protein 1... 42 2.3
13gb|AC122707.2| Homo sapiens chromosome 5 clone RP11-158J3, compl... 42 2.3
14gb|AC022163.5| Homo sapiens chromosome 5 clone RP11-454F19, comp... 42 2.3
15gb|AC008965.6| Homo sapiens chromosome 5 clone CTD-2364L17, comp... 42 2.3
16ref|XM_342858.2| PREDICTED: Rattus norvegicus ADAMTS-like 1 (pre... 42 2.3
17emb|AL772390.8| Mouse DNA sequence from clone RP23-446N8 on chro... 42 2.3
18gb|AY853707.1| Cyprinid sp. EA-2004 putative pheromone receptor ... 40 9.0
19gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 9.0
20gb|AC132412.2| Mus musculus BAC clone RP23-355N5 from chromosome... 40 9.0
21gb|AC182584.3| Pan troglodytes BAC clone CH251-530K15 from chrom... 40 9.0
22gb|AC138116.4| Mus musculus BAC clone RP24-242H5 from chromosome... 40 9.0
23ref|XM_571535.1| Cryptococcus neoformans var. neoformans JEC21 t... 40 9.0
24emb|BX465201.38| Zebrafish DNA sequence from clone DKEY-15F11 in... 40 9.0
25emb|AL627407.10| Human DNA sequence from clone RP11-496J2 on chr... 40 9.0
26emb|AL672061.2| Human DNA sequence from clone RP11-101C11 on chr... 40 9.0
27gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 40 9.0
28gb|AC121765.2| Homo sapiens chromosome 3 clone RP11-767D18, comp... 40 9.0
29gb|AC134420.8| Mus musculus chromosome 15, clone RP23-478J5, com... 40 9.0
30gb|AC183099.3| Pan troglodytes BAC clone CH251-727F5 from chromo... 40 9.0
31emb|Z22151.1|SDFNBBA S.dysgalactiae fnbB gene 40 9.0
32gb|AC105266.2| Homo sapiens chromosome 3 clone RP11-796K6, compl... 40 9.0
33gb|AC117525.2| Homo sapiens chromosome 5 clone RP11-1152B5, comp... 40 9.0
34gb|AC004450.3| Arabidopsis thaliana chromosome 2 clone F14B2 map... 40 9.0
35gb|AC093166.6| Homo sapiens BAC clone RP11-1429F20 from 2, compl... 40 9.0
36gb|AC106765.2| Homo sapiens chromosome 5 clone RP11-242M1, compl... 40 9.0
37gb|AC092996.5| Homo sapiens 3 BAC RP11-692O13 (Roswell Park Canc... 40 9.0
38emb|BX571831.7| Zebrafish DNA sequence from clone DKEY-266J11 in... 40 9.0
39gb|AC008271.6| Homo sapiens BAC clone RP11-123E16 from 2, comple... 40 9.0
40gb|AC083899.6| Homo sapiens BAC clone RP11-223J6 from 2, complet... 40 9.0
41emb|AL954317.8| Zebrafish DNA sequence from clone DKEY-251I8 in ... 40 9.0
42emb|BX004867.7| Zebrafish DNA sequence from clone CH211-159K2 in... 40 9.0
43emb|AL807762.9| Mouse DNA sequence from clone RP23-48F4 on chrom... 40 9.0
44emb|AL732447.9| Mouse DNA sequence from clone RP23-142F14 on chr... 40 9.0 
>ref|NM_197088.1| Oryza sativa (japonica cultivar-group) putative tetratricopeptide
            repeat protein (OSJNBa0029C15.16), mRNA
          Length = 1647

 Score =  264 bits (133), Expect = 3e-67
 Identities = 217/246 (88%), Gaps = 1/246 (0%)
 Strand = Plus / Minus

                                                                        
Query: 393  gctgccagtggctcaagtcggaacaatgatttcttagcctgttgatttgaaggatctagc 452
            |||||||||||||| |||||||||| |||| ||||||| |||| |||||||||||| |||
Sbjct: 1496 gctgccagtggctccagtcggaacagtgatctcttagcttgttcatttgaaggatccagc 1437

                                                                        
Query: 453  tcaatgannnnnnncatgtcagcaatagcatcatcatagttttcaagctttttcatgtgc 512
            ||||| |       ||| ||||||||||| |||||||||| ||||||||||| |||||||
Sbjct: 1436 tcaataatttttttcatatcagcaatagcttcatcatagtgttcaagctttt-catgtgc 1378

                                                                        
Query: 513  ttctcccctccgaagcaaggctttcaaatatgaaggattcagctcaagcgctttggtgca 572
            |||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 1377 ttctcccctccggagcaaggctttcaagtatgaaggattcagctcaagtgctttggtgca 1318

                                                                        
Query: 573  ctccttaactgtttcatcatatttccccaatttcaagaaacatacagcacgatttgaatg 632
             || || | ||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct: 1317 ttctttgattgtttcatcatatttgcccaacttcaagaagcatacagcacgatttgaatg 1258

                  
Query: 633  gcatgc 638
             |||||
Sbjct: 1257 acatgc 1252



 Score =  105 bits (53), Expect = 2e-19
 Identities = 95/109 (87%)
 Strand = Plus / Minus

                                                                        
Query: 248  ctggaaagaaacggagtacgagcccgtgtttggatccttgacagctttgaaattgtccac 307
            |||||| |||| |||||||||||| |||||||| || || ||||||||||||||||| ||
Sbjct: 1641 ctggaacgaaatggagtacgagcctgtgtttgggtctttaacagctttgaaattgtcgac 1582

                                                             
Query: 308  gctcataccaaaccgccccagcaccgagttgcccagatctttcagcttt 356
            |||||| ||||| ||||| ||||| || || ||||||||||| ||||||
Sbjct: 1581 gctcatcccaaagcgcccgagcacagaattccccagatctttgagcttt 1533
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>dbj|AK063937.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-D11, full
           insert sequence
          Length = 1188

 Score =  264 bits (133), Expect = 3e-67
 Identities = 217/246 (88%), Gaps = 1/246 (0%)
 Strand = Plus / Minus

                                                                       
Query: 393 gctgccagtggctcaagtcggaacaatgatttcttagcctgttgatttgaaggatctagc 452
           |||||||||||||| |||||||||| |||| ||||||| |||| |||||||||||| |||
Sbjct: 758 gctgccagtggctccagtcggaacagtgatctcttagcttgttcatttgaaggatccagc 699

                                                                       
Query: 453 tcaatgannnnnnncatgtcagcaatagcatcatcatagttttcaagctttttcatgtgc 512
           ||||| |       ||| ||||||||||| |||||||||| ||||||||||| |||||||
Sbjct: 698 tcaataatttttttcatatcagcaatagcttcatcatagtgttcaagctttt-catgtgc 640

                                                                       
Query: 513 ttctcccctccgaagcaaggctttcaaatatgaaggattcagctcaagcgctttggtgca 572
           |||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 639 ttctcccctccggagcaaggctttcaagtatgaaggattcagctcaagtgctttggtgca 580

                                                                       
Query: 573 ctccttaactgtttcatcatatttccccaatttcaagaaacatacagcacgatttgaatg 632
            || || | ||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct: 579 ttctttgattgtttcatcatatttgcccaacttcaagaagcatacagcacgatttgaatg 520

                 
Query: 633 gcatgc 638
            |||||
Sbjct: 519 acatgc 514



 Score =  105 bits (53), Expect = 2e-19
 Identities = 95/109 (87%)
 Strand = Plus / Minus

                                                                       
Query: 248 ctggaaagaaacggagtacgagcccgtgtttggatccttgacagctttgaaattgtccac 307
           |||||| |||| |||||||||||| |||||||| || || ||||||||||||||||| ||
Sbjct: 903 ctggaacgaaatggagtacgagcctgtgtttgggtctttaacagctttgaaattgtcgac 844

                                                            
Query: 308 gctcataccaaaccgccccagcaccgagttgcccagatctttcagcttt 356
           |||||| ||||| ||||| ||||| || || ||||||||||| ||||||
Sbjct: 843 gctcatcccaaagcgcccgagcacagaattccccagatctttgagcttt 795
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>gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 genomic sequence, complete
             sequence
          Length = 148816

 Score =  161 bits (81), Expect = 4e-36
 Identities = 115/125 (92%), Gaps = 1/125 (0%)
 Strand = Plus / Plus

                                                                         
Query: 472   cagcaatagcatcatcatagttttcaagctttttcatgtgcttctcccctccgaagcaag 531
             |||||||||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct: 22851 cagcaatagcttcatcatagtgttcaagctttt-catgtgcttctcccctccggagcaag 22909

                                                                         
Query: 532   gctttcaaatatgaaggattcagctcaagcgctttggtgcactccttaactgtttcatca 591
             |||||||| |||||||||||||||||||| ||||||||||| || || | ||||||||||
Sbjct: 22910 gctttcaagtatgaaggattcagctcaagtgctttggtgcattctttgattgtttcatca 22969

                  
Query: 592   tattt 596
             |||||
Sbjct: 22970 tattt 22974



 Score =  105 bits (53), Expect = 2e-19
 Identities = 95/109 (87%)
 Strand = Plus / Plus

                                                                         
Query: 248   ctggaaagaaacggagtacgagcccgtgtttggatccttgacagctttgaaattgtccac 307
             |||||| |||| |||||||||||| |||||||| || || ||||||||||||||||| ||
Sbjct: 22138 ctggaacgaaatggagtacgagcctgtgtttgggtctttaacagctttgaaattgtcgac 22197

                                                              
Query: 308   gctcataccaaaccgccccagcaccgagttgcccagatctttcagcttt 356
             |||||| ||||| ||||| ||||| || || ||||||||||| ||||||
Sbjct: 22198 gctcatcccaaagcgcccgagcacagaattccccagatctttgagcttt 22246



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                         
Query: 393   gctgccagtggctcaagtcggaacaatgatttcttagcctgttgatttgaaggatctagc 452
             |||||||||||||| |||||||||| |||| ||||||| |||| |||||||||||| |||
Sbjct: 22636 gctgccagtggctccagtcggaacagtgatctcttagcttgttcatttgaaggatccagc 22695

                  
Query: 453   tcaat 457
             |||||
Sbjct: 22696 tcaat 22700



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 599   ccaatttcaagaaacatacagcacgatttgaatggcatgc 638
             |||| |||||||| |||||||||||||||||||| |||||
Sbjct: 23443 ccaacttcaagaagcatacagcacgatttgaatgacatgc 23482
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  161 bits (81), Expect = 4e-36
 Identities = 115/125 (92%), Gaps = 1/125 (0%)
 Strand = Plus / Minus

                                                                            
Query: 472      cagcaatagcatcatcatagttttcaagctttttcatgtgcttctcccctccgaagcaag 531
                |||||||||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct: 17909190 cagcaatagcttcatcatagtgttcaagctttt-catgtgcttctcccctccggagcaag 17909132

                                                                            
Query: 532      gctttcaaatatgaaggattcagctcaagcgctttggtgcactccttaactgtttcatca 591
                |||||||| |||||||||||||||||||| ||||||||||| || || | ||||||||||
Sbjct: 17909131 gctttcaagtatgaaggattcagctcaagtgctttggtgcattctttgattgtttcatca 17909072

                     
Query: 592      tattt 596
                |||||
Sbjct: 17909071 tattt 17909067



 Score =  105 bits (53), Expect = 2e-19
 Identities = 95/109 (87%)
 Strand = Plus / Minus

                                                                            
Query: 248      ctggaaagaaacggagtacgagcccgtgtttggatccttgacagctttgaaattgtccac 307
                |||||| |||| |||||||||||| |||||||| || || ||||||||||||||||| ||
Sbjct: 17909903 ctggaacgaaatggagtacgagcctgtgtttgggtctttaacagctttgaaattgtcgac 17909844

                                                                 
Query: 308      gctcataccaaaccgccccagcaccgagttgcccagatctttcagcttt 356
                |||||| ||||| ||||| ||||| || || ||||||||||| ||||||
Sbjct: 17909843 gctcatcccaaagcgcccgagcacagaattccccagatctttgagcttt 17909795



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                            
Query: 393      gctgccagtggctcaagtcggaacaatgatttcttagcctgttgatttgaaggatctagc 452
                |||||||||||||| |||||||||| |||| ||||||| |||| |||||||||||| |||
Sbjct: 17909405 gctgccagtggctccagtcggaacagtgatctcttagcttgttcatttgaaggatccagc 17909346

                     
Query: 453      tcaat 457
                |||||
Sbjct: 17909345 tcaat 17909341



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                        
Query: 599      ccaatttcaagaaacatacagcacgatttgaatggcatgc 638
                |||| |||||||| |||||||||||||||||||| |||||
Sbjct: 17908598 ccaacttcaagaagcatacagcacgatttgaatgacatgc 17908559
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  161 bits (81), Expect = 4e-36
 Identities = 115/125 (92%), Gaps = 1/125 (0%)
 Strand = Plus / Minus

                                                                            
Query: 472      cagcaatagcatcatcatagttttcaagctttttcatgtgcttctcccctccgaagcaag 531
                |||||||||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct: 17918443 cagcaatagcttcatcatagtgttcaagctttt-catgtgcttctcccctccggagcaag 17918385

                                                                            
Query: 532      gctttcaaatatgaaggattcagctcaagcgctttggtgcactccttaactgtttcatca 591
                |||||||| |||||||||||||||||||| ||||||||||| || || | ||||||||||
Sbjct: 17918384 gctttcaagtatgaaggattcagctcaagtgctttggtgcattctttgattgtttcatca 17918325

                     
Query: 592      tattt 596
                |||||
Sbjct: 17918324 tattt 17918320



 Score =  105 bits (53), Expect = 2e-19
 Identities = 95/109 (87%)
 Strand = Plus / Minus

                                                                            
Query: 248      ctggaaagaaacggagtacgagcccgtgtttggatccttgacagctttgaaattgtccac 307
                |||||| |||| |||||||||||| |||||||| || || ||||||||||||||||| ||
Sbjct: 17919156 ctggaacgaaatggagtacgagcctgtgtttgggtctttaacagctttgaaattgtcgac 17919097

                                                                 
Query: 308      gctcataccaaaccgccccagcaccgagttgcccagatctttcagcttt 356
                |||||| ||||| ||||| ||||| || || ||||||||||| ||||||
Sbjct: 17919096 gctcatcccaaagcgcccgagcacagaattccccagatctttgagcttt 17919048



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                            
Query: 393      gctgccagtggctcaagtcggaacaatgatttcttagcctgttgatttgaaggatctagc 452
                |||||||||||||| |||||||||| |||| ||||||| |||| |||||||||||| |||
Sbjct: 17918658 gctgccagtggctccagtcggaacagtgatctcttagcttgttcatttgaaggatccagc 17918599

                     
Query: 453      tcaat 457
                |||||
Sbjct: 17918598 tcaat 17918594



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                        
Query: 599      ccaatttcaagaaacatacagcacgatttgaatggcatgc 638
                |||| |||||||| |||||||||||||||||||| |||||
Sbjct: 17917851 ccaacttcaagaagcatacagcacgatttgaatgacatgc 17917812
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>gb|AY106661.1| Zea mays PCO108608 mRNA sequence
          Length = 414

 Score =  113 bits (57), Expect = 7e-22
 Identities = 96/109 (88%)
 Strand = Plus / Plus

                                                                       
Query: 267 gagcccgtgtttggatccttgacagctttgaaattgtccacgctcataccaaaccgcccc 326
           ||||| |||||||| || |||||||||||||||||||| || ||||| || || || |||
Sbjct: 169 gagccagtgtttgggtctttgacagctttgaaattgtcaacactcatcccgaagcggccc 228

                                                            
Query: 327 agcaccgagttgcccagatctttcagctttgcaagcatttcctccttca 375
           ||||| ||||| |||||||||||||||||||||| |||||| |||||||
Sbjct: 229 agcacagagttccccagatctttcagctttgcaatcatttcttccttca 277
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>emb|AL353896.12| Human DNA sequence from clone RP11-390J12 on chromosome 13, complete
             sequence
          Length = 89264

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 423   ttcttagcctgttgatttgaagg 445
             |||||||||||||||||||||||
Sbjct: 76228 ttcttagcctgttgatttgaagg 76250
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>gb|AC080018.14|AC080018 Mus musculus 3 BAC RP23-200E11 (Roswell Park Cancer Institute Mouse BAC
              Library) complete sequence
          Length = 209643

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 490    agttttcaagctttttcatgtgcttct 516
              |||||||||||| ||||||||||||||
Sbjct: 117426 agttttcaagctctttcatgtgcttct 117400
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>emb|AL606832.4| Mouse DNA sequence from clone RP23-346G22 on chromosome 3, complete
             sequence
          Length = 157428

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 490   agttttcaagctttttcatgtgcttct 516
             |||||||||||| ||||||||||||||
Sbjct: 77471 agttttcaagctctttcatgtgcttct 77497
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>emb|CR933436.1| Paramecium tetraurelia, Small GTPase rab, putative, complete gene
          Length = 3001

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 468 atgtcagcaatagcatcatca 488
           |||||||||||||||||||||
Sbjct: 984 atgtcagcaatagcatcatca 964
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>emb|AJ719624.1| Gallus gallus mRNA for hypothetical protein, clone 4k19
          Length = 3324

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 490  agttttcaagctttttcatgt 510
            |||||||||||||||||||||
Sbjct: 1490 agttttcaagctttttcatgt 1470
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>ref|NM_001008440.1| Gallus gallus lymphocyte cytosolic protein 1 (L-plastin) (LCP1), mRNA
          Length = 3324

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 490  agttttcaagctttttcatgt 510
            |||||||||||||||||||||
Sbjct: 1490 agttttcaagctttttcatgt 1470
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>gb|AC122707.2| Homo sapiens chromosome 5 clone RP11-158J3, complete sequence
          Length = 180483

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 151    ccaccatgattgaaaggatgt 171
              |||||||||||||||||||||
Sbjct: 157872 ccaccatgattgaaaggatgt 157852
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>gb|AC022163.5| Homo sapiens chromosome 5 clone RP11-454F19, complete sequence
          Length = 165675

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 151   ccaccatgattgaaaggatgt 171
             |||||||||||||||||||||
Sbjct: 32358 ccaccatgattgaaaggatgt 32338
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>gb|AC008965.6| Homo sapiens chromosome 5 clone CTD-2364L17, complete sequence
          Length = 139939

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 151   ccaccatgattgaaaggatgt 171
             |||||||||||||||||||||
Sbjct: 37593 ccaccatgattgaaaggatgt 37613
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>ref|XM_342858.2| PREDICTED: Rattus norvegicus ADAMTS-like 1 (predicted)
            (Adamtsl1_predicted), mRNA
          Length = 3468

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 482  atcatcatagttttcaagctt 502
            |||||||||||||||||||||
Sbjct: 1109 atcatcatagttttcaagctt 1089
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>emb|AL772390.8| Mouse DNA sequence from clone RP23-446N8 on chromosome 4, complete
             sequence
          Length = 59040

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 586   tcatcatatttccccaatttc 606
             |||||||||||||||||||||
Sbjct: 23215 tcatcatatttccccaatttc 23195
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>gb|AY853707.1| Cyprinid sp. EA-2004 putative pheromone receptor CPpr11 mRNA,
            complete cds
          Length = 2559

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 582  tgtttcatcatatttcccca 601
            ||||||||||||||||||||
Sbjct: 1491 tgtttcatcatatttcccca 1472
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>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete
              sequence
          Length = 1438950

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 350    cagctttgcaagcatttcct 369
              ||||||||||||||||||||
Sbjct: 604013 cagctttgcaagcatttcct 604032
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>gb|AC132412.2| Mus musculus BAC clone RP23-355N5 from chromosome 6, complete sequence
          Length = 171747

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 498    agctttttcatgtgcttctc 517
              ||||||||||||||||||||
Sbjct: 114617 agctttttcatgtgcttctc 114598
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>gb|AC182584.3| Pan troglodytes BAC clone CH251-530K15 from chromosome 2, complete
             sequence
          Length = 206103

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   tataattcattatatatgct 234
             ||||||||||||||||||||
Sbjct: 92278 tataattcattatatatgct 92297
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>gb|AC138116.4| Mus musculus BAC clone RP24-242H5 from chromosome 15, complete sequence
          Length = 164014

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 626   ttgaatggcatgcagaggatatat 649
             |||||||||||||| |||||||||
Sbjct: 60071 ttgaatggcatgcaaaggatatat 60094
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>ref|XM_571535.1| Cryptococcus neoformans var. neoformans JEC21 telomere length control
            protein (CNF02070) partial mRNA
          Length = 8904

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 350  cagctttgcaagcatttcct 369
            ||||||||||||||||||||
Sbjct: 4939 cagctttgcaagcatttcct 4958
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>emb|BX465201.38| Zebrafish DNA sequence from clone DKEY-15F11 in linkage group 14,
              complete sequence
          Length = 262688

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 578    taactgtttcatcatatttcccca 601
              ||||| ||||||||||||||||||
Sbjct: 223509 taactatttcatcatatttcccca 223532
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>emb|AL627407.10| Human DNA sequence from clone RP11-496J2 on chromosome X, complete
              sequence
          Length = 110978

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 497    aagctttttcatgtgcttct 516
              ||||||||||||||||||||
Sbjct: 104178 aagctttttcatgtgcttct 104159
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>emb|AL672061.2| Human DNA sequence from clone RP11-101C11 on chromosome 1 Contains
            the 3' end of a novel gene, complete sequence
          Length = 91448

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  tgtataattcattatatatg 232
            ||||||||||||||||||||
Sbjct: 2084 tgtataattcattatatatg 2103
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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 579     aactgtttcatcatatttcc 598
               ||||||||||||||||||||
Sbjct: 2466380 aactgtttcatcatatttcc 2466399
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>gb|AC121765.2| Homo sapiens chromosome 3 clone RP11-767D18, complete sequence
          Length = 194455

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 485    atcatagttttcaagctttttcat 508
              ||||||||||||||| ||||||||
Sbjct: 176162 atcatagttttcaagatttttcat 176185
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>gb|AC134420.8| Mus musculus chromosome 15, clone RP23-478J5, complete sequence
          Length = 190455

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 626    ttgaatggcatgcagaggatatat 649
              |||||||||||||| |||||||||
Sbjct: 173467 ttgaatggcatgcaaaggatatat 173444
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>gb|AC183099.3| Pan troglodytes BAC clone CH251-727F5 from chromosome 2, complete
             sequence
          Length = 183714

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   tataattcattatatatgct 234
             ||||||||||||||||||||
Sbjct: 48623 tataattcattatatatgct 48642
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>emb|Z22151.1|SDFNBBA S.dysgalactiae fnbB gene
          Length = 3661

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 574  tccttaactgtttcatcatatttc 597
            |||||| |||||||||||||||||
Sbjct: 2064 tccttacctgtttcatcatatttc 2041
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>gb|AC105266.2| Homo sapiens chromosome 3 clone RP11-796K6, complete sequence
          Length = 181462

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 485    atcatagttttcaagctttttcat 508
              ||||||||||||||| ||||||||
Sbjct: 132088 atcatagttttcaagatttttcat 132111
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>gb|AC117525.2| Homo sapiens chromosome 5 clone RP11-1152B5, complete sequence
          Length = 139141

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 422   tttcttagcctgttgatttgaagg 445
             |||||||||||||||| |||||||
Sbjct: 41102 tttcttagcctgttgacttgaagg 41125
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>gb|AC004450.3| Arabidopsis thaliana chromosome 2 clone F14B2 map CIC10F02, complete
             sequence
          Length = 90283

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 426   ttagcctgttgatttgaagg 445
             ||||||||||||||||||||
Sbjct: 55782 ttagcctgttgatttgaagg 55801
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>gb|AC093166.6| Homo sapiens BAC clone RP11-1429F20 from 2, complete sequence
          Length = 213865

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 215    tataattcattatatatgct 234
              ||||||||||||||||||||
Sbjct: 118973 tataattcattatatatgct 118992
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>gb|AC106765.2| Homo sapiens chromosome 5 clone RP11-242M1, complete sequence
          Length = 163074

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 422    tttcttagcctgttgatttgaagg 445
              |||||||||||||||| |||||||
Sbjct: 158693 tttcttagcctgttgacttgaagg 158670
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>gb|AC092996.5| Homo sapiens 3 BAC RP11-692O13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 132900

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 600    caatttcaagaaacatacag 619
              ||||||||||||||||||||
Sbjct: 129495 caatttcaagaaacatacag 129514
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>emb|BX571831.7| Zebrafish DNA sequence from clone DKEY-266J11 in linkage group 18,
             complete sequence
          Length = 195572

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 582   tgtttcatcatatttcccca 601
             ||||||||||||||||||||
Sbjct: 35512 tgtttcatcatatttcccca 35531
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>gb|AC008271.6| Homo sapiens BAC clone RP11-123E16 from 2, complete sequence
          Length = 111159

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 492   ttttcaagctttttcatgtg 511
             ||||||||||||||||||||
Sbjct: 67369 ttttcaagctttttcatgtg 67388
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>gb|AC083899.6| Homo sapiens BAC clone RP11-223J6 from 2, complete sequence
          Length = 153666

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   tataattcattatatatgct 234
             ||||||||||||||||||||
Sbjct: 21889 tataattcattatatatgct 21870
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>emb|AL954317.8| Zebrafish DNA sequence from clone DKEY-251I8 in linkage group 1,
             complete sequence
          Length = 97165

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   gccatgtttgtctgtataat 220
             ||||||||||||||||||||
Sbjct: 33275 gccatgtttgtctgtataat 33256
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>emb|BX004867.7| Zebrafish DNA sequence from clone CH211-159K2 in linkage group 14,
              complete sequence
          Length = 160087

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 578    taactgtttcatcatatttcccca 601
              ||||| ||||||||||||||||||
Sbjct: 125617 taactatttcatcatatttcccca 125594
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>emb|AL807762.9| Mouse DNA sequence from clone RP23-48F4 on chromosome 4, complete
              sequence
          Length = 264321

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     aggagaataaagtccaagaa 73
              ||||||||||||||||||||
Sbjct: 112692 aggagaataaagtccaagaa 112673
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>emb|AL732447.9| Mouse DNA sequence from clone RP23-142F14 on chromosome 2, complete
             sequence
          Length = 154433

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    gtgcatcatacatgaaagca 49
             ||||||||||||||||||||
Sbjct: 60355 gtgcatcatacatgaaagca 60336


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,761,940
Number of Sequences: 3902068
Number of extensions: 5761940
Number of successful extensions: 127150
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 126964
Number of HSP's gapped (non-prelim): 181
length of query: 658
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 635
effective length of database: 17,143,297,704
effective search space: 10885994042040
effective search space used: 10885994042040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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