ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17m01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APX2_ORYSA (Q9FE01) L-ascorbate peroxidase 2, cytosolic (EC 1.11... 35 0.043
2APX1_PEA (P48534) L-ascorbate peroxidase, cytosolic (EC 1.11.1.1... 35 0.056
3APX1_ORYSA (P93404) L-ascorbate peroxidase 1, cytosolic (EC 1.11... 35 0.056
4APX1_ARATH (Q05431) L-ascorbate peroxidase, cytosolic (EC 1.11.1... 33 0.16
5LOXL4_HUMAN (Q96JB6) Lysyl oxidase homolog 4 precursor (EC 1.4.3... 28 5.2
6LOXL4_MOUSE (Q924C6) Lysyl oxidase homolog 4 precursor (EC 1.4.3... 27 8.9
7SYFB_LEIXX (Q6AGD6) Phenylalanyl-tRNA synthetase beta chain (EC ... 27 8.9

>APX2_ORYSA (Q9FE01) L-ascorbate peroxidase 2, cytosolic (EC 1.11.1.11) (APXb)|
          Length = 251

 Score = 35.0 bits (79), Expect = 0.043
 Identities = 18/34 (52%), Positives = 19/34 (55%)
 Frame = -2

Query: 404 AFRPLVDKXXXXXXXXXXXXXXAHLKLSELGFGE 303
           AFRPLV+K              AHLKLSELGF E
Sbjct: 217 AFRPLVEKYAADEDAFFADYAEAHLKLSELGFAE 250



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>APX1_PEA (P48534) L-ascorbate peroxidase, cytosolic (EC 1.11.1.11) (AP)|
          Length = 249

 Score = 34.7 bits (78), Expect = 0.056
 Identities = 18/34 (52%), Positives = 19/34 (55%)
 Frame = -2

Query: 401 FRPLVDKXXXXXXXXXXXXXXAHLKLSELGFGEA 300
           FRPLV+K              AHLKLSELGF EA
Sbjct: 216 FRPLVEKYAADEDVFFADYAEAHLKLSELGFAEA 249



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>APX1_ORYSA (P93404) L-ascorbate peroxidase 1, cytosolic (EC 1.11.1.11) (APXa)|
          Length = 249

 Score = 34.7 bits (78), Expect = 0.056
 Identities = 18/35 (51%), Positives = 20/35 (57%)
 Frame = -2

Query: 404 AFRPLVDKXXXXXXXXXXXXXXAHLKLSELGFGEA 300
           AFRPLV+K              AHLKLSELGF +A
Sbjct: 215 AFRPLVEKYAADEKAFFEDYKEAHLKLSELGFADA 249



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>APX1_ARATH (Q05431) L-ascorbate peroxidase, cytosolic (EC 1.11.1.11) (AP)|
          Length = 249

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -2

Query: 401 FRPLVDKXXXXXXXXXXXXXXAHLKLSELGFGEA 300
           FRPLV+K              AH+KLSELGF +A
Sbjct: 216 FRPLVEKYAADEDAFFADYAEAHMKLSELGFADA 249



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>LOXL4_HUMAN (Q96JB6) Lysyl oxidase homolog 4 precursor (EC 1.4.3.-) (Lysyl|
           oxidase-like protein 4) (Lysyl oxidase-related protein
           C)
          Length = 756

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 57  LQDRSITRYEASKAKQCXTPSTDRSNPNPDKHMTWPLGRRQIL 185
           L+DR +++   +  + C + S D        HM WP G R++L
Sbjct: 548 LEDRPLSQLYCAHEENCLSKSAD--------HMDWPYGYRRLL 582



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>LOXL4_MOUSE (Q924C6) Lysyl oxidase homolog 4 precursor (EC 1.4.3.-) (Lysyl|
           oxidase-like protein 4) (Lysyl oxidase-related protein
           C)
          Length = 757

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 57  LQDRSITRYEASKAKQCXTPSTDRSNPNPDKHMTWPLGRRQIL 185
           L+DR ++    +  + C + S D        HM WP G R++L
Sbjct: 549 LEDRPLSMLYCAHEENCLSKSAD--------HMDWPYGYRRLL 583



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>SYFB_LEIXX (Q6AGD6) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 847

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 6   TGEKQPGKELHNT*RFTLQDRSITRYEASKAKQ 104
           TG     K L    RF   DR++T  EAS+AKQ
Sbjct: 799 TGLPDSSKSLTFALRFRADDRTLTAAEASEAKQ 831


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.129    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,877,575
Number of Sequences: 219361
Number of extensions: 564698
Number of successful extensions: 952
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
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