ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18a18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GP157_HUMAN (Q5UAW9) Probable G-protein coupled receptor 157 31 0.66
2VIPR2_RAT (P35000) Vasoactive intestinal polypeptide receptor 2 ... 30 1.9
3HUNB_DROVI (P13361) Protein hunchback 29 2.5
4VIPR2_MOUSE (P41588) Vasoactive intestinal polypeptide receptor ... 28 4.3
5EDG4_MACFA (Q95KH4) Lysophosphatidic acid receptor Edg-4 (LPA re... 28 7.3
6EDG4_HUMAN (Q9HBW0) Lysophosphatidic acid receptor Edg-4 (LPA re... 28 7.3
7HEXC_BOMMO (P49010) Chitooligosaccharidolytic beta-N-acetylgluco... 27 9.5

>GP157_HUMAN (Q5UAW9) Probable G-protein coupled receptor 157|
          Length = 335

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +2

Query: 188 GGRCLRLPSIAIDPGCGHSLLHAISLINIASCTRCGVRRFFIRLICCCSS 337
           G   ++ P + +  G G++     + I    CTR    R F    CCCSS
Sbjct: 251 GSPAVQTPVLVVLHGIGNTFQGGANCIMFVLCTRAVRTRLFSLCCCCCSS 300



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>VIPR2_RAT (P35000) Vasoactive intestinal polypeptide receptor 2 precursor|
           (VIP-R-2) (Pituitary adenylate cyclase-activating
           polypeptide type III receptor) (PACAP type III receptor)
           (PACAP-R-3)
          Length = 437

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 195 LPPSLVFYYYLLLSANQ*AVCLWSWVWTGMSTQ 97
           LPPS  F  YLL+     +VC+ +W+ T +S +
Sbjct: 234 LPPSRCFLAYLLIGWGIPSVCIGAWIATRLSLE 266



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>HUNB_DROVI (P13361) Protein hunchback|
          Length = 816

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 19/65 (29%), Positives = 25/65 (38%)
 Frame = +1

Query: 88  QHLLGGHSSPNPTPQAHCLLIC*QQQIIVKDKGGREVPPFAIDSNRSRLWSQPSSCHQLN 267
           QH  GG+  P+P P            I   DK     PP  +   +S   SQ SS     
Sbjct: 163 QHYYGGNMRPSPQPTPTAAPTAVAAAIQTGDKLQALTPPMDVTPPKSPAKSQQSSAEPEK 222

Query: 268 QHRLL 282
           +H L+
Sbjct: 223 EHDLM 227



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>VIPR2_MOUSE (P41588) Vasoactive intestinal polypeptide receptor 2 precursor|
           (VIP-R-2) (Pituitary adenylate cyclase-activating
           polypeptide type III receptor) (PACAP type III receptor)
           (PACAP-R-3)
          Length = 437

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 195 LPPSLVFYYYLLLSANQ*AVCLWSWVWTGMSTQ 97
           LPPS  F  YLL+     +VC+ +W  T +S +
Sbjct: 234 LPPSRCFLAYLLIGWGIPSVCIGAWTATRLSLE 266



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>EDG4_MACFA (Q95KH4) Lysophosphatidic acid receptor Edg-4 (LPA receptor 2)|
           (LPA-2)
          Length = 351

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 245 LLHAISLINIA--SCTRCGVRRFFIRLICC 328
           L  A SL+N A  SC    +RR F RL+CC
Sbjct: 283 LAEANSLVNAAVYSCRDAEMRRTFRRLLCC 312



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>EDG4_HUMAN (Q9HBW0) Lysophosphatidic acid receptor Edg-4 (LPA receptor 2)|
           (LPA-2)
          Length = 351

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 245 LLHAISLINIA--SCTRCGVRRFFIRLICC 328
           L  A SL+N A  SC    +RR F RL+CC
Sbjct: 283 LAEANSLVNAAVYSCRDAEMRRTFRRLLCC 312



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>HEXC_BOMMO (P49010) Chitooligosaccharidolytic beta-N-acetylglucosaminidase|
           precursor (EC 3.2.1.52) (Beta-GlcNAcase)
           (Beta-hexosaminidase) (Beta-N-acetylhexosaminidase)
          Length = 596

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 229 RLWSQPSSCHQLNQHRLLH 285
           R+W++PS+  Q  +HR+LH
Sbjct: 549 RMWAEPSTAWQDAEHRMLH 567


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,791,949
Number of Sequences: 219361
Number of extensions: 770308
Number of successful extensions: 1509
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1509
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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