ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd17l12 |
|---|---|
| Clone Library Name | barley_pub |
>YODT_BACSU (O34662) Probable aminotransferase yodT (EC 2.6.-.-)| Length = 444 Score = 43.1 bits (100), Expect = 4e-04 Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 8/65 (12%) Frame = -3 Query: 460 FXAEWGVGAIFGQECQKRGMLVRVA--------GDSIMMSPPLTMTLGEVDELVSIYGEA 305 F E + + E +KRG++V + GD+++++PP T++ GE++EL+SI+ E Sbjct: 374 FPPEQAITQLIVSEAKKRGLIVYPSKAGIDSGEGDAVIIAPPFTISDGEMEELISIFSET 433 Query: 304 MKATE 290 + A E Sbjct: 434 VAAVE 438
>BIOA_BACSU (P53555) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase| (EC 2.6.1.62) (7,8-diamino-pelargonic acid aminotransferase) (DAPA aminotransferase) Length = 448 Score = 38.1 bits (87), Expect = 0.013 Identities = 20/60 (33%), Positives = 32/60 (53%) Frame = -3 Query: 481 NKSRDSPFXAEWGVGAIFGQECQKRGMLVRVAGDSIMMSPPLTMTLGEVDELVSIYGEAM 302 +K P+ A+ +G + ++ GML R GD I PPL T E+ E+V+I +A+ Sbjct: 381 SKETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIAFLPPLASTAEELSEMVAIMKQAI 440
>Y4UB_RHISN (Q53196) Probable aminotransferase y4uB (EC 2.6.1.-)| Length = 467 Score = 36.6 bits (83), Expect = 0.036 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Frame = -3 Query: 484 DNKSRDSPFXAEWGVGAIFGQECQKRGMLVRVA--GDSIMMSPPLTMTLGEVDELVSIYG 311 +NK R P VGA + + RG++ R GD + +PPL T EVDE+V++ Sbjct: 394 ENKKRFDPLLK---VGARVSKAARDRGLIARAMPHGDILGFAPPLVTTKEEVDEIVAMAE 450 Query: 310 EAMKA 296 +A+++ Sbjct: 451 KAVRS 455
>ARGD_BACST (Q07907) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)| Length = 385 Score = 33.5 bits (75), Expect = 0.31 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 11/54 (20%) Frame = -3 Query: 445 GVGAIFGQECQ-----------KRGMLVRVAGDSIMMSPPLTMTLGEVDELVSI 317 G+G + G ECQ + G+LV AG +++ PL +T E+DE V I Sbjct: 318 GLGLLVGIECQTDVAPLLPLIHENGLLVLSAGPNVIRLLPLVVTKAEIDEAVDI 371
>ARGD_LISIN (Q92BC0) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)| Length = 384 Score = 32.3 bits (72), Expect = 0.69 Identities = 14/36 (38%), Positives = 26/36 (72%), Gaps = 1/36 (2%) Frame = -3 Query: 421 ECQKRGMLVRVAGDSIM-MSPPLTMTLGEVDELVSI 317 E + +G+L+ AG +I+ + PPLT++ E+D+ +SI Sbjct: 336 ELRDKGLLILTAGPNILRILPPLTVSYAEIDQAISI 371
>DGDA_BURCE (P16932) 2,2-dialkylglycine decarboxylase (EC 4.1.1.64) (DGD)| Length = 432 Score = 32.0 bits (71), Expect = 0.90 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 5/54 (9%) Frame = -3 Query: 445 GVGAIFGQECQKRGMLVRVA-----GDSIMMSPPLTMTLGEVDELVSIYGEAMK 299 G+GA +EC G+ + + G ++PPLT++ E+D +S+ G+A++ Sbjct: 376 GLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 429
>SYC_TREDE (Q73RJ6) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 492 Score = 30.4 bits (67), Expect = 2.6 Identities = 13/51 (25%), Positives = 25/51 (49%) Frame = +3 Query: 33 FIWQIVYTCKNGPKSILXGIMSSITGAXXKEILRHXAHEEQXSFRSGAPLL 185 F W+ + T KNG K++ + + G EI+ + A E + +S ++ Sbjct: 318 FSWEAMETAKNGRKNLNNRVAKWLDGLSDSEIMEYAALTENLNLKSAKDMI 368
>ARGD_STRMU (Q59928) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)| Length = 379 Score = 30.4 bits (67), Expect = 2.6 Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%) Frame = -3 Query: 409 RGMLVRVAGDSIM-MSPPLTMTLGEVDELVSIYGEAMK 299 RG++V AG +++ + PPLT+T E+D+ + I E + Sbjct: 339 RGLIVLTAGTNVIRLLPPLTLTKDEIDQGIMILQEVFE 376
>ECTB_NOCFA (Q5YW77) Diaminobutyrate--2-oxoglutarate transaminase (EC 2.6.1.76)| (Diaminobutyrate--2-oxoglutarate aminotransferase) (L-2,4-diaminobutyric acid transaminase) (DABA aminotransferase) Length = 436 Score = 29.6 bits (65), Expect = 4.4 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 6/43 (13%) Frame = -3 Query: 427 GQECQ---KRGMLVRVAGDS---IMMSPPLTMTLGEVDELVSI 317 G+ CQ +RG+LV +G S + + PPLT+T E+D+ + I Sbjct: 367 GKVCQVAFERGLLVETSGSSDEVVKLLPPLTITDDELDQGLQI 409
>ARGD_ARCFU (O30156) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)| Length = 375 Score = 29.3 bits (64), Expect = 5.8 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = -3 Query: 445 GVGAIFGQECQKRGMLVRVAGDS-IMMSPPLTMTLGEVDELVSI 317 G A F ++C + G+LV + I + PPL +T EVD+ V I Sbjct: 329 GDAAEFVRKCLENGLLVNNTSERRIRLVPPLVITEREVDKAVEI 372
>ARGD_LISMO (Q8Y6U4) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)| Length = 386 Score = 28.9 bits (63), Expect = 7.6 Identities = 11/34 (32%), Positives = 24/34 (70%), Gaps = 1/34 (2%) Frame = -3 Query: 421 ECQKRGMLVRVAGDSIM-MSPPLTMTLGEVDELV 323 E + +G+L+ AG +++ + PPLT++ E+D+ + Sbjct: 336 ELRDKGLLILTAGTNVLRILPPLTVSYAEIDQAI 369
>CUTL2_HUMAN (O14529) Homeobox protein cut-like 2 (Homeobox protein Cux-2)| (Cut-like 2) Length = 1424 Score = 28.5 bits (62), Expect = 9.9 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = -3 Query: 358 LTMTLGEVDELVSIYGEAMKATEGRVAELKSK 263 L LGE +E + + A+KAT+ + EL+ K Sbjct: 134 LAARLGEAEEKIKVLHSALKATQAELLELRRK 165
>ARGD_LISMF (Q71Z79) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)| Length = 386 Score = 28.5 bits (62), Expect = 9.9 Identities = 11/34 (32%), Positives = 24/34 (70%), Gaps = 1/34 (2%) Frame = -3 Query: 421 ECQKRGMLVRVAGDSIM-MSPPLTMTLGEVDELV 323 E + +G+L+ AG +++ + PPLT++ E+D+ + Sbjct: 336 ELRDKGLLILTAGANVLRILPPLTVSYAEIDQAI 369 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,507,110 Number of Sequences: 219361 Number of extensions: 1136508 Number of successful extensions: 2965 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2893 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2956 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
