ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17l12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473880.1| Oryza sativa (japonica cultivar-group), predic... 115 1e-22
2gb|AF251073.1|AF251073 Oryza sativa putative aminotransferase mR... 115 1e-22
3dbj|AK102306.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 1e-22
4dbj|AK061967.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 1e-22
5gb|AF297651.1| Oryza sativa putative aminotransferase mRNA, comp... 115 1e-22
6gb|BT018487.1| Zea mays clone EL01N0424F04.d mRNA sequence 82 2e-12
7emb|AL662950.2|OSJN00152 Oryza sativa genomic DNA, chromosome 4,... 78 3e-11
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
10dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
11ref|XM_463843.1| Oryza sativa (japonica cultivar-group), mRNA 74 5e-10
12gb|AF324485.1|AF324485 Oryza sativa aminotransferase-like protei... 74 5e-10
13gb|BT018495.1| Zea mays clone EL01N0426C11.d mRNA sequence 72 2e-09
14gb|BT017234.1| Zea mays clone EL01N0304E10.c mRNA sequence 72 2e-09
15ref|XM_473879.1| Oryza sativa (japonica cultivar-group), predic... 68 3e-08
16dbj|AK100259.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
17gb|AY105736.1| Zea mays PCO069643 mRNA sequence 64 5e-07
18ref|XM_480608.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.027
19dbj|AK103274.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.027
20gb|AC154471.2| Mus musculus BAC clone RP23-195D3 from chromosome... 42 1.7
21emb|BX323879.11| Zebrafish DNA sequence from clone DKEY-30L21 in... 40 6.6
22gb|AC098887.4| Mus musculus BAC clone RP23-122N6 from 10, comple... 40 6.6
23emb|AL136146.10| Human DNA sequence from clone RP5-916O11 on chr... 40 6.6
24dbj|AK169879.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 6.6
25gb|AC026269.26| Homo sapiens chromosome 11, clone RP11-745E9, co... 40 6.6
26emb|BX323039.6| Zebrafish DNA sequence from clone CH211-145A11 i... 40 6.6
27dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
28gb|AC062031.7| Homo sapiens BAC clone RP11-474G7 from 2, complet... 40 6.6
29dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
30dbj|AP004565.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6 
>ref|XM_473880.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1551

 Score =  115 bits (58), Expect = 1e-22
 Identities = 157/191 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  agctctgccactctcccctctgtggccttcatagcttctccatatatgctcacaagctca 332
            ||||| ||||| ||| |||| |||||||| |  || |||||||| |||||||| ||||| 
Sbjct: 1529 agctcagccaccctctcctcggtggccttgagtgcatctccatagatgctcaccagctcc 1470

                                                                        
Query: 333  tcaacttcgccaagggtcattgtcaatggnggngacatcataatgctgtcgcccgcaacc 392
            || |||||  || |||||||| ||||||| || |||||||| ||| |||| || ||||| 
Sbjct: 1469 tcgacttcatcaggggtcattatcaatggtggtgacatcatgatgttgtctccagcaact 1410

                                                                        
Query: 393  ctaaccaacatgccacgcttctggcactcctgcccgaagatagcaccaacaccccattca 452
            ||||||| |||||| |||||||||||||||   || ||||| || || || |||||||||
Sbjct: 1409 ctaaccagcatgccgcgcttctggcactccgctccaaagatcgcgccgacgccccattca 1350

                       
Query: 453  gcanggaatgg 463
            ||| |||||||
Sbjct: 1349 gcagggaatgg 1339
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>gb|AF251073.1|AF251073 Oryza sativa putative aminotransferase mRNA, partial cds
          Length = 799

 Score =  115 bits (58), Expect = 1e-22
 Identities = 157/191 (82%)
 Strand = Plus / Minus

                                                                       
Query: 273 agctctgccactctcccctctgtggccttcatagcttctccatatatgctcacaagctca 332
           ||||| ||||| ||| |||| |||||||| |  || |||||||| |||||||| ||||| 
Sbjct: 675 agctcagccaccctctcctcggtggccttgagtgcatctccatagatgctcaccagctcc 616

                                                                       
Query: 333 tcaacttcgccaagggtcattgtcaatggnggngacatcataatgctgtcgcccgcaacc 392
           || |||||  || |||||||| ||||||| || |||||||| ||| |||| || ||||| 
Sbjct: 615 tcgacttcatcaggggtcattatcaatggtggtgacatcatgatgttgtctccagcaact 556

                                                                       
Query: 393 ctaaccaacatgccacgcttctggcactcctgcccgaagatagcaccaacaccccattca 452
           ||||||| |||||| |||||||||||||||   || ||||| || || || |||||||||
Sbjct: 555 ctaaccagcatgccgcgcttctggcactccgctccaaagatcgcgccgacgccccattca 496

                      
Query: 453 gcanggaatgg 463
           ||| |||||||
Sbjct: 495 gcagggaatgg 485
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>dbj|AK102306.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090A04, full
            insert sequence
          Length = 2070

 Score =  115 bits (58), Expect = 1e-22
 Identities = 157/191 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  agctctgccactctcccctctgtggccttcatagcttctccatatatgctcacaagctca 332
            ||||| ||||| ||| |||| |||||||| |  || |||||||| |||||||| ||||| 
Sbjct: 1712 agctcagccaccctctcctcggtggccttgagtgcatctccatagatgctcaccagctcc 1653

                                                                        
Query: 333  tcaacttcgccaagggtcattgtcaatggnggngacatcataatgctgtcgcccgcaacc 392
            || |||||  || |||||||| ||||||| || |||||||| ||| |||| || ||||| 
Sbjct: 1652 tcgacttcatcaggggtcattatcaatggtggtgacatcatgatgttgtctccagcaact 1593

                                                                        
Query: 393  ctaaccaacatgccacgcttctggcactcctgcccgaagatagcaccaacaccccattca 452
            ||||||| |||||| |||||||||||||||   || ||||| || || || |||||||||
Sbjct: 1592 ctaaccagcatgccgcgcttctggcactccgctccaaagatcgcgccgacgccccattca 1533

                       
Query: 453  gcanggaatgg 463
            ||| |||||||
Sbjct: 1532 gcagggaatgg 1522
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>dbj|AK061967.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-G12, full
            insert sequence
          Length = 1513

 Score =  115 bits (58), Expect = 1e-22
 Identities = 157/191 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  agctctgccactctcccctctgtggccttcatagcttctccatatatgctcacaagctca 332
            ||||| ||||| ||| |||| |||||||| |  || |||||||| |||||||| ||||| 
Sbjct: 1129 agctcagccaccctctcctcggtggccttgagtgcatctccatagatgctcaccagctcc 1070

                                                                        
Query: 333  tcaacttcgccaagggtcattgtcaatggnggngacatcataatgctgtcgcccgcaacc 392
            || |||||  || |||||||| ||||||| || |||||||| ||| |||| || ||||| 
Sbjct: 1069 tcgacttcatcaggggtcattatcaatggtggtgacatcatgatgttgtctccagcaact 1010

                                                                        
Query: 393  ctaaccaacatgccacgcttctggcactcctgcccgaagatagcaccaacaccccattca 452
            ||||||| |||||| |||||||||||||||   || ||||| || || || |||||||||
Sbjct: 1009 ctaaccagcatgccgcgcttctggcactccgctccaaagatcgcgccgacgccccattca 950

                       
Query: 453  gcanggaatgg 463
            ||| |||||||
Sbjct: 949  gcagggaatgg 939
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>gb|AF297651.1| Oryza sativa putative aminotransferase mRNA, complete cds
          Length = 1993

 Score =  115 bits (58), Expect = 1e-22
 Identities = 157/191 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  agctctgccactctcccctctgtggccttcatagcttctccatatatgctcacaagctca 332
            ||||| ||||| ||| |||| |||||||| |  || |||||||| |||||||| ||||| 
Sbjct: 1620 agctcagccaccctctcctcggtggccttgagtgcatctccatagatgctcaccagctcc 1561

                                                                        
Query: 333  tcaacttcgccaagggtcattgtcaatggnggngacatcataatgctgtcgcccgcaacc 392
            || |||||  || |||||||| ||||||| || |||||||| ||| |||| || ||||| 
Sbjct: 1560 tcgacttcatcaggggtcattatcaatggtggtgacatcatgatgttgtctccagcaact 1501

                                                                        
Query: 393  ctaaccaacatgccacgcttctggcactcctgcccgaagatagcaccaacaccccattca 452
            ||||||| |||||| |||||||||||||||   || ||||| || || || |||||||||
Sbjct: 1500 ctaaccagcatgccgcgcttctggcactccgctccaaagatcgcgccgacgccccattca 1441

                       
Query: 453  gcanggaatgg 463
            ||| |||||||
Sbjct: 1440 gcagggaatgg 1430
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>gb|BT018487.1| Zea mays clone EL01N0424F04.d mRNA sequence
          Length = 1851

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 82/96 (85%)
 Strand = Plus / Minus

                                                                        
Query: 366  gacatcataatgctgtcgcccgcaaccctaaccaacatgccacgcttctggcactcctgc 425
            |||||||| |||  |||||| |||||||| |||| |||||| ||||||||||||||||  
Sbjct: 1401 gacatcatgatggcgtcgccagcaaccctgaccagcatgccgcgcttctggcactcctct 1342

                                                
Query: 426  ccgaagatagcaccaacaccccattcagcanggaat 461
            || ||||| |||||||| |||||||| ||| |||||
Sbjct: 1341 ccaaagatggcaccaaccccccattcggcagggaat 1306
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>emb|AL662950.2|OSJN00152 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008M17,
             complete sequence
          Length = 133279

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                         
Query: 346   gggtcattgtcaatggnggngacatcataatgctgtcgcccgcaaccctaaccaacatgc 405
             |||||||| ||||||| || |||||||| ||| |||| || ||||| ||||||| |||||
Sbjct: 37184 gggtcattatcaatggtggtgacatcatgatgttgtctccagcaactctaaccagcatgc 37125

                              
Query: 406   cacgcttctggcactcc 422
             | |||||||||||||||
Sbjct: 37124 cgcgcttctggcactcc 37108



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                         
Query: 259   ttttcttcgacttgagctctgccactctcccctctgtggccttcatagcttctccatata 318
             ||||||| ||| | ||||||||||||||  |||| |||||||||| |||||| || ||||
Sbjct: 30100 ttttcttggacctcagctctgccactctttcctcggtggccttcaaagcttcaccgtata 30041

                         
Query: 319   tgctcacaagct 330
             ||||||| ||||
Sbjct: 30040 tgctcaccagct 30029
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                            
Query: 346      gggtcattgtcaatggnggngacatcataatgctgtcgcccgcaaccctaaccaacatgc 405
                |||||||| ||||||| || |||||||| ||| |||| || ||||| ||||||| |||||
Sbjct: 31215583 gggtcattatcaatggtggtgacatcatgatgttgtctccagcaactctaaccagcatgc 31215524

                                 
Query: 406      cacgcttctggcactcc 422
                | |||||||||||||||
Sbjct: 31215523 cgcgcttctggcactcc 31215507



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                            
Query: 259      ttttcttcgacttgagctctgccactctcccctctgtggccttcatagcttctccatata 318
                ||||||| ||| | ||||||||||||||  |||| |||||||||| |||||| || ||||
Sbjct: 31208499 ttttcttggacctcagctctgccactctttcctcggtggccttcaaagcttcaccgtata 31208440

                            
Query: 319      tgctcacaagct 330
                ||||||| ||||
Sbjct: 31208439 tgctcaccagct 31208428
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                        
Query: 273    agctctgccactctcccctctgtggccttcatagcttctccatatatgctcacaagct 330
              ||||||||||||||  ||||||| ||||||| ||||||||||||||||||||| ||||
Sbjct: 679616 agctctgccactctttcctctgttgccttcagagcttctccatatatgctcaccagct 679673
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>dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1399_H05
          Length = 147670

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                       
Query: 273   agctctgccactctcccctctgtggccttcatagcttctccatatatgctcacaagct 330
             ||||||||||||||  ||||||| ||||||| ||||||||||||||||||||| ||||
Sbjct: 36511 agctctgccactctttcctctgttgccttcagagcttctccatatatgctcaccagct 36568
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>ref|XM_463843.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1452

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                 
Query: 273  agctctgccactctcccctctgtggccttcatagcttctccatatatgctcac 325
            ||||||||||||||  ||||||| ||||||| |||||||||||||||||||||
Sbjct: 1433 agctctgccactctttcctctgttgccttcagagcttctccatatatgctcac 1381



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 50/60 (83%)
 Strand = Plus / Minus

                                                                        
Query: 389  aaccctaaccaacatgccacgcttctggcactcctgcccgaagatagcaccaacacccca 448
            |||| |||||| ||||||||| ||||  |||||||| || || ||  |||||||||||||
Sbjct: 1317 aaccttaaccatcatgccacgtttcttacactcctgtccaaatatttcaccaacacccca 1258
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>gb|AF324485.1|AF324485 Oryza sativa aminotransferase-like protein mRNA, complete cds
          Length = 1632

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                 
Query: 273  agctctgccactctcccctctgtggccttcatagcttctccatatatgctcac 325
            ||||||||||||||  ||||||| ||||||| |||||||||||||||||||||
Sbjct: 1453 agctctgccactctttcctctgttgccttcagagcttctccatatatgctcac 1401



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 50/60 (83%)
 Strand = Plus / Minus

                                                                        
Query: 389  aaccctaaccaacatgccacgcttctggcactcctgcccgaagatagcaccaacacccca 448
            |||| |||||| ||||||||| ||||  |||||||| || || ||  |||||||||||||
Sbjct: 1337 aaccttaaccatcatgccacgtttcttacactcctgtccaaatatttcaccaacacccca 1278
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>gb|BT018495.1| Zea mays clone EL01N0426C11.d mRNA sequence
          Length = 1897

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 80/95 (84%)
 Strand = Plus / Minus

                                                                        
Query: 366  gacatcataatgctgtcgcccgcaaccctaaccaacatgccacgcttctggcactcctgc 425
            |||||||| |||  |||||| || ||||| |||| |||||| |||||||||||||| |  
Sbjct: 1498 gacatcatgatggcgtcgccagcgaccctgaccagcatgccgcgcttctggcactcttcg 1439

                                               
Query: 426  ccgaagatagcaccaacaccccattcagcanggaa 460
            |||||||| |||||||| |||||||| ||| ||||
Sbjct: 1438 ccgaagatggcaccaaccccccattcggcagggaa 1404
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>gb|BT017234.1| Zea mays clone EL01N0304E10.c mRNA sequence
          Length = 670

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 80/95 (84%)
 Strand = Plus / Minus

                                                                       
Query: 366 gacatcataatgctgtcgcccgcaaccctaaccaacatgccacgcttctggcactcctgc 425
           |||||||| |||  |||||| || ||||| |||| |||||| |||||||||||||| |  
Sbjct: 201 gacatcatgatggcgtcgccagcgaccctcaccagcatgccgcgcttctggcactcttcg 142

                                              
Query: 426 ccgaagatagcaccaacaccccattcagcanggaa 460
           |||||||| |||||||| |||||||| ||| ||||
Sbjct: 141 ccgaagatggcaccaaccccccattcggcagggaa 107
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>ref|XM_473879.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1494

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 70/82 (85%)
 Strand = Plus / Minus

                                                                        
Query: 259  ttttcttcgacttgagctctgccactctcccctctgtggccttcatagcttctccatata 318
            ||||||| ||| | ||||||||||||||  |||| |||||||||| |||||| || ||||
Sbjct: 1489 ttttcttggacctcagctctgccactctttcctcggtggccttcaaagcttcaccgtata 1430

                                  
Query: 319  tgctcacaagctcatcaacttc 340
            ||||||| ||  ||||||||||
Sbjct: 1429 tgctcaccagtccatcaacttc 1408
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>dbj|AK100259.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062G17, full
            insert sequence
          Length = 1906

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 70/82 (85%)
 Strand = Plus / Minus

                                                                        
Query: 259  ttttcttcgacttgagctctgccactctcccctctgtggccttcatagcttctccatata 318
            ||||||| ||| | ||||||||||||||  |||| |||||||||| |||||| || ||||
Sbjct: 1755 ttttcttggacctcagctctgccactctttcctcggtggccttcaaagcttcaccgtata 1696

                                  
Query: 319  tgctcacaagctcatcaacttc 340
            ||||||| ||  ||||||||||
Sbjct: 1695 tgctcaccagtccatcaacttc 1674
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>gb|AY105736.1| Zea mays PCO069643 mRNA sequence
          Length = 2096

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                        
Query: 366  gacatcataatgctgtcgcccgcaaccctaaccaacatgccacgcttctggcactcctgc 425
            |||||||| |||  |||||| || ||||| |||| |||||| |||||||||||||| |  
Sbjct: 1659 gacatcatgatggcgtcgccagcgaccctcaccagcatgccgcgcttctggcactcttcg 1600

                                               
Query: 426  ccgaagatagcaccaacaccccattcagcanggaa 460
            |||||||| ||||| || |||||||| ||| ||||
Sbjct: 1599 ccgaagatggcaccgaccccccattcggcagggaa 1565
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>ref|XM_480608.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1848

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 437  accaacaccccattcagcanggaatgg 463
            ||||||||||||||||||| |||||||
Sbjct: 1454 accaacaccccattcagcagggaatgg 1428
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>dbj|AK103274.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124J10, full
            insert sequence
          Length = 1848

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 437  accaacaccccattcagcanggaatgg 463
            ||||||||||||||||||| |||||||
Sbjct: 1454 accaacaccccattcagcagggaatgg 1428
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>gb|AC154471.2| Mus musculus BAC clone RP23-195D3 from chromosome 14, complete sequence
          Length = 192057

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 294    gtggccttcatagcttctcca 314
              |||||||||||||||||||||
Sbjct: 155637 gtggccttcatagcttctcca 155657
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>emb|BX323879.11| Zebrafish DNA sequence from clone DKEY-30L21 in linkage group 10,
              complete sequence
          Length = 243476

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     tacatgcaagaatggaccca 72
              ||||||||||||||||||||
Sbjct: 104924 tacatgcaagaatggaccca 104905
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>gb|AC098887.4| Mus musculus BAC clone RP23-122N6 from 10, complete sequence
          Length = 211397

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 47     tgtctatacatgcaagaatg 66
              ||||||||||||||||||||
Sbjct: 144379 tgtctatacatgcaagaatg 144398
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>emb|AL136146.10| Human DNA sequence from clone RP5-916O11 on chromosome 11p12-13,
             complete sequence
          Length = 106073

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   ccactctcccctctgtggcc 299
             ||||||||||||||||||||
Sbjct: 94849 ccactctcccctctgtggcc 94830
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>dbj|AK169879.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630002F13
           product:ATP-binding cassette, sub-family A (ABC1),
           member 5, full insert sequence
          Length = 2097

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 205 tattctgtacacatccgaga 224
           ||||||||||||||||||||
Sbjct: 168 tattctgtacacatccgaga 187
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>gb|AC026269.26| Homo sapiens chromosome 11, clone RP11-745E9, complete sequence
          Length = 173145

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   ccactctcccctctgtggcc 299
             ||||||||||||||||||||
Sbjct: 31190 ccactctcccctctgtggcc 31171
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>emb|BX323039.6| Zebrafish DNA sequence from clone CH211-145A11 in linkage group 10,
              complete sequence
          Length = 150772

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     tacatgcaagaatggaccca 72
              ||||||||||||||||||||
Sbjct: 136081 tacatgcaagaatggaccca 136100
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 441     acaccccattcagcanggaatgg 463
               ||||||||||||||| |||||||
Sbjct: 6164652 acaccccattcagcagggaatgg 6164674
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>gb|AC062031.7| Homo sapiens BAC clone RP11-474G7 from 2, complete sequence
          Length = 172792

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   ctctgccactctcccctctg 294
             ||||||||||||||||||||
Sbjct: 91573 ctctgccactctcccctctg 91554
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>dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1119_C05
          Length = 126112

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 441   acaccccattcagcanggaatgg 463
             ||||||||||||||| |||||||
Sbjct: 28045 acaccccattcagcagggaatgg 28067
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>dbj|AP004565.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0486F07
          Length = 154926

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 441    acaccccattcagcanggaatgg 463
              ||||||||||||||| |||||||
Sbjct: 120669 acaccccattcagcagggaatgg 120691


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,558,800
Number of Sequences: 3902068
Number of extensions: 2558800
Number of successful extensions: 41342
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41254
Number of HSP's gapped (non-prelim): 88
length of query: 486
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 464
effective length of database: 17,147,199,772
effective search space: 7956300694208
effective search space used: 7956300694208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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