ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17l05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YHV0_YEAST (P38848) Hypothetical 66.1 kDa protein in IMP3-SPO12 ... 28 8.7

>YHV0_YEAST (P38848) Hypothetical 66.1 kDa protein in IMP3-SPO12 intergenic|
           region
          Length = 579

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 116 YVC-ISSMCFFLYSHPKQHPCVL 181
           YVC I + C  +Y HP+ HP ++
Sbjct: 414 YVCSIFAWCLLIYMHPRAHPKII 436


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,459,070
Number of Sequences: 219361
Number of extensions: 333567
Number of successful extensions: 537
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 80,573,946
effective HSP length: 39
effective length of database: 72,018,867
effective search space used: 1728452808
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top