Clone Name | rbasd17l05 |
---|---|
Clone Library Name | barley_pub |
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 44.1 bits (22), Expect = 0.16 Identities = 22/22 (100%) Strand = Plus / Minus Query: 43 ttattgagatgtgaagttatca 64 |||||||||||||||||||||| Sbjct: 2732355 ttattgagatgtgaagttatca 2732334
>gb|AC022889.8| Homo sapiens chromosome 15, clone RP11-492D5, complete sequence Length = 108652 Score = 42.1 bits (21), Expect = 0.61 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 tacaaatacaaggcagatttt 31 ||||||||||||||||||||| Sbjct: 11060 tacaaatacaaggcagatttt 11080
>gb|AC104420.2| Homo sapiens chromosome 15, clone RP11-945A13, complete sequence Length = 178756 Score = 42.1 bits (21), Expect = 0.61 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 tacaaatacaaggcagatttt 31 ||||||||||||||||||||| Sbjct: 113766 tacaaatacaaggcagatttt 113786
>gb|AC120416.11| Mus musculus chromosome 1, clone RP24-472N18, complete sequence Length = 199727 Score = 40.1 bits (20), Expect = 2.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 128 tcttccatgtgtttctttctctattcac 155 ||||| ||||| |||||||||||||||| Sbjct: 134904 tcttcaatgtgattctttctctattcac 134877
>gb|AC158779.4| Mus musculus chromosome 15, clone RP23-258P17, complete sequence Length = 203163 Score = 40.1 bits (20), Expect = 2.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 116 tatgtgtgcatttcttccatgtgtttct 143 ||||||||| ||||||||||||| |||| Sbjct: 168470 tatgtgtgcttttcttccatgtgattct 168443
>gb|AC004875.2| Homo sapiens PAC clone RP4-745K6 from 7, complete sequence Length = 130607 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 tattcacaccccaagcaaca 168 |||||||||||||||||||| Sbjct: 18321 tattcacaccccaagcaaca 18302
>emb|AL157363.9| Human DNA sequence from clone RP11-268K3 on chromosome 13 Contains the 3' end of the GPC5 gene for glypican 5, complete sequence Length = 164732 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 attgagatgtgaagttatca 64 |||||||||||||||||||| Sbjct: 22202 attgagatgtgaagttatca 22183
>emb|AL109805.14|HSDJ581P3 Human DNA sequence from clone RP4-581P3 on chromosome 20 Contains the SF3A3P gene for splicing factor 3a subunit 3 pseudogene and part of the ATRN gene for attractin, complete sequence Length = 73666 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 tttcttccatgtgtttctttctct 149 |||||||||| ||||||||||||| Sbjct: 45849 tttcttccatctgtttctttctct 45826
>gb|AC160463.5| Mus musculus chromosome 1, clone RP23-266D4, complete sequence Length = 167352 Score = 40.1 bits (20), Expect = 2.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 128 tcttccatgtgtttctttctctattcac 155 ||||| ||||| |||||||||||||||| Sbjct: 62147 tcttcaatgtgattctttctctattcac 62120
>gb|AC099051.2| Homo sapiens chromosome 3 clone RP11-416A9, complete sequence Length = 174372 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 124 catttcttccatgtgtttctttct 147 |||||||||||||| ||||||||| Sbjct: 17582 catttcttccatgtttttctttct 17559
>gb|AC182039.1| Ornithorhynchus anatinus chromosome UNK clone OABb-323A1, complete sequence Length = 120208 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 acaaggcagattttaacgat 37 |||||||||||||||||||| Sbjct: 93009 acaaggcagattttaacgat 92990
>gb|AC123023.4| Homo sapiens 3 BAC RP11-727M21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 183779 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 124 catttcttccatgtgtttctttct 147 |||||||||||||| ||||||||| Sbjct: 165762 catttcttccatgtttttctttct 165739
>gb|AC126554.3| Mus musculus BAC clone RP23-465O13 from 12, complete sequence Length = 186243 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 123 gcatttcttccatgtgtttctttc 146 |||||||||||||| ||||||||| Sbjct: 111862 gcatttcttccatgagtttctttc 111885
>gb|AC147783.13| Mus musculus chromosome 12, clone RP23-256M6, complete sequence Length = 212734 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 123 gcatttcttccatgtgtttctttc 146 |||||||||||||| ||||||||| Sbjct: 107694 gcatttcttccatgagtttctttc 107671
>gb|AY790256.1| Trichinella spiralis newborn larvae-specific DNase II-3 mRNA, complete cds Length = 1259 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 gataacaattattgagatg 53 ||||||||||||||||||| Sbjct: 60 gataacaattattgagatg 42
>gb|AY522332.4| Agrotis segetum granulovirus, complete genome Length = 131680 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 124 catttcttccatgtgtttctttc 146 |||||||||||||| |||||||| Sbjct: 107387 catttcttccatgtttttctttc 107409
>gb|AC146201.2| Pan troglodytes BAC clone RP43-34J1 from 7, complete sequence Length = 169640 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 attgagatgtgaagttatc 63 ||||||||||||||||||| Sbjct: 96693 attgagatgtgaagttatc 96675
>gb|AC004864.1| Homo sapiens PAC clone RP4-721B17 from 7, complete sequence Length = 106795 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 attgagatgtgaagttatc 63 ||||||||||||||||||| Sbjct: 43499 attgagatgtgaagttatc 43481
>emb|BX323464.18| Zebrafish DNA sequence from clone CH211-93E11 in linkage group 12, complete sequence Length = 167058 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 36 ataacaattattgagatgt 54 ||||||||||||||||||| Sbjct: 36719 ataacaattattgagatgt 36701
>gb|AC000117.1| Homo sapiens BAC clone CTB-62A19 from 7, complete sequence Length = 110384 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 ataacaattattgagatgt 54 ||||||||||||||||||| Sbjct: 97703 ataacaattattgagatgt 97721
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 gataacaattattgagatg 53 ||||||||||||||||||| Sbjct: 4610241 gataacaattattgagatg 4610223
>emb|AL359205.15| Human DNA sequence from clone RP11-345N16 on chromosome 1 Contains a novel gene and the 3' end of a variant of novel gene (MGC22773), complete sequence Length = 169434 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 134 atgtgtttctttctctatt 152 ||||||||||||||||||| Sbjct: 137080 atgtgtttctttctctatt 137062
>emb|AL096704.9|HSDJ833K8 Human DNA sequence from clone RP5-833K8 on chromosome 10 Contains one CpG island, complete sequence Length = 96270 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 127 ttcttccatgtgtttcttt 145 ||||||||||||||||||| Sbjct: 58651 ttcttccatgtgtttcttt 58633
>ref|NM_001017113.2| Xenopus tropicalis steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2) (srd5a2), mRNA Length = 1730 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 122 tgcatttcttccatgtgtt 140 ||||||||||||||||||| Sbjct: 1067 tgcatttcttccatgtgtt 1085
>emb|BX294013.1|NCX4G11 Neurospora crassa DNA linkage group V Cosmid contig X4G11 Length = 119154 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 125 atttcttccatgtgtttct 143 ||||||||||||||||||| Sbjct: 69353 atttcttccatgtgtttct 69371
>emb|AL627168.10| Zebrafish DNA sequence from clone RP71-1M12 in linkage group 24 Contains a gene for a novel trypsin inhibitor, a novel gene similar to human GDAP1 (ganglioside-induced differentiation-associated protein 1), a gene for a novel protein similar to vertebrate junctophilins and three CpG islands, complete sequence Length = 180922 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 134 atgtgtttctttctctattcaca 156 |||||||||||||||| |||||| Sbjct: 6117 atgtgtttctttctctgttcaca 6139
>gb|AC022450.5| Homo sapiens chromosome 5 clone RP11-96F10, complete sequence Length = 160076 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 tacatctgcctgctactat 118 ||||||||||||||||||| Sbjct: 95889 tacatctgcctgctactat 95907
>emb|AL845424.14| Zebrafish DNA sequence from clone CH211-140L13 in linkage group 20, complete sequence Length = 73598 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 59 ttatcaacagcacaagtagaaaa 81 |||| |||||||||||||||||| Sbjct: 7563 ttataaacagcacaagtagaaaa 7585
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 aacagcacaagtagaaaaa 82 ||||||||||||||||||| Sbjct: 9231664 aacagcacaagtagaaaaa 9231682
>gb|AC019057.8| Homo sapiens BAC clone RP11-121A1 from 2, complete sequence Length = 186896 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 caaatacaaggcagatttt 31 ||||||||||||||||||| Sbjct: 5222 caaatacaaggcagatttt 5204
>gb|AC009407.8| Homo sapiens BAC clone RP11-223I10 from 2, complete sequence Length = 202568 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 125 atttcttccatgtgtttct 143 ||||||||||||||||||| Sbjct: 12203 atttcttccatgtgtttct 12221
>emb|BX005299.9| Zebrafish DNA sequence from clone CH211-107C24, complete sequence Length = 163047 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 139 tttctttctctattcacac 157 ||||||||||||||||||| Sbjct: 158925 tttctttctctattcacac 158943
>emb|CR761203.2| Xenopus tropicalis finished cDNA, clone TEgg027l14 Length = 1730 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 122 tgcatttcttccatgtgtt 140 ||||||||||||||||||| Sbjct: 1067 tgcatttcttccatgtgtt 1085
>gb|AC155884.2| Medicago truncatula chromosome 2 BAC clone mth2-10d10, complete sequence Length = 79222 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 140 ttctttctctattcacaccccaa 162 ||||||| ||||||||||||||| Sbjct: 16873 ttctttcactattcacaccccaa 16895
>emb|CR450837.12| Zebrafish DNA sequence from clone CH211-51L13 in linkage group 16, complete sequence Length = 166747 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 gtacaaatacaaggcagat 28 ||||||||||||||||||| Sbjct: 102834 gtacaaatacaaggcagat 102852 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 gtacaaatacaaggcagat 28 ||||||||||||||||||| Sbjct: 15824 gtacaaatacaaggcagat 15806
>dbj|AP000852.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-851M3, complete sequence Length = 166277 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 cttacatctgcctgctact 116 ||||||||||||||||||| Sbjct: 104483 cttacatctgcctgctact 104501
>gb|AC110885.14| Mus musculus chromosome 7, clone RP24-342P18, complete sequence Length = 223826 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 124 catttcttccatgtgtttc 142 ||||||||||||||||||| Sbjct: 84237 catttcttccatgtgtttc 84219
>gb|AE017195.1| Bacillus cereus ATCC 10987 plasmid pBc10987, complete sequence Length = 208369 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 ttaacgataacaattattg 48 ||||||||||||||||||| Sbjct: 172190 ttaacgataacaattattg 172172
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 aacagcacaagtagaaaaa 82 ||||||||||||||||||| Sbjct: 9231549 aacagcacaagtagaaaaa 9231567
>emb|AL731760.2|CNS07YPJ Oryza sativa chromosome 12, . BAC OJ1005_C11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104533 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 aacagcacaagtagaaaaa 82 ||||||||||||||||||| Sbjct: 87554 aacagcacaagtagaaaaa 87572
>gb|AC172892.1| Mus musculus BAC clone RP23-269B2 from chromosome 16, complete sequence Length = 206740 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 136 gtgtttctttctctattca 154 ||||||||||||||||||| Sbjct: 194206 gtgtttctttctctattca 194224
>emb|AL772393.11| Mouse DNA sequence from clone RP23-398D18 on chromosome 4, complete sequence Length = 207495 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 115 ctatgtgtgcatttcttcc 133 ||||||||||||||||||| Sbjct: 91973 ctatgtgtgcatttcttcc 91991 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,127,860 Number of Sequences: 3902068 Number of extensions: 2127860 Number of successful extensions: 139974 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 139743 Number of HSP's gapped (non-prelim): 231 length of query: 193 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 171 effective length of database: 17,147,199,772 effective search space: 2932171161012 effective search space used: 2932171161012 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)