>M4K4_MOUSE (P97820) Mitogen-activated protein kinase kinase kinase kinase 4|
           (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 4) (MEK
           kinase kinase 4) (MEKKK 4) (HPK/GCK-like kinase HGK)
           (Nck-interacting kinase)
          Length = 1233

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 12/61 (19%)
 Frame = -3

Query: 234 LLHVHRQREDAQRAGPPQYQ----------EPRPQDDRIH--REVKWILHRGYIASLLGN 91
           LLH HR+    Q+  PPQ Q          EP+P  D     REV+W     ++ASL  N
Sbjct: 492 LLHDHRRPHAQQQPPPPQQQDRSKPSFHAPEPKPHYDPADRAREVQW----SHLASLKNN 547

Query: 90  V 88
           V
Sbjct: 548 V 548

>SYIC_MOUSE (Q8BU30) Isoleucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.5)|
           (Isoleucine--tRNA ligase) (IleRS) (IRS)
          Length = 1262

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 20  VFLTSALTENSN*VATSFHTHPWTFPSNEAI 112
           VF+T  L E+ N    ++ T PWT PSN A+
Sbjct: 206 VFVTFPLEEDENTSLVAWTTTPWTLPSNLAL 236

>SYIC_HUMAN (P41252) Isoleucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.5)|
           (Isoleucine--tRNA ligase) (IleRS) (IRS)
          Length = 1266

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 20  VFLTSALTENSN*VATSFHTHPWTFPSNEAI 112
           VF+T  L E+      ++ T PWT PSN A+
Sbjct: 210 VFVTFPLEEDETVSLVAWTTTPWTLPSNLAV 240

>ZN555_HUMAN (Q8NEP9) Zinc finger protein 555|
          Length = 628

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -1

Query: 317 CTNDAKRNVPPHVLAERRRRLAGRSTAAYSMCTGKGRTLKGRDLRNIRNLVL 162
           C++  +R+V  H   ++ +   G   A   MC+   ++ + RDL  + N+VL
Sbjct: 575 CSSSLRRHVRIHTTEKQYKCNVGHPPANEFMCSASEKSHQERDLIKVVNMVL 626

>CXA3_BOVIN (P41987) Gap junction alpha-3 protein (Connexin-44) (Cx44)|
          Length = 406

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 219 RQREDAQRAGPPQYQEPRP-QDDRIHREVKWILHRGYIASLL 97
           R+ E  + AGP  +Q+P P +DDR    +   L R Y+ +++
Sbjct: 108 REEEPPKAAGPEGHQDPAPVRDDRGKVRIAGALLRTYVFNII 149

>VE1_HPV16 (P03114) Replication protein E1 (EC 3.6.1.-) (ATP-dependent|
           helicase E1)
          Length = 649

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 162 QDDRIHREVKWILHRGYIASLLGNVHGCV 76
           Q+ + HR+   +L R Y+ S L ++ GCV
Sbjct: 74  QEAKQHRDAVQVLKRKYLVSPLSDISGCV 102

>Y1544_METJA (Q58939) Hypothetical protein MJ1544|
          Length = 441

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -1

Query: 200 KGRDLRNIRNLVLRMTGFIEK*NGFY 123
           KGR L N+  L LR  GF+E  N FY
Sbjct: 330 KGRILENLVFLELRRRGFVENENLFY 355

>IF2_BRUSU (Q8FXT2) Translation initiation factor IF-2|
          Length = 959

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 228 HVHRQREDAQRAGPPQYQEPRPQD 157
           HV +QR   QR G  Q Q PRP D
Sbjct: 119 HVAQQRPVHQRPGGQQAQRPRPAD 142

>IF2_BRUME (Q8YEB3) Translation initiation factor IF-2|
          Length = 959

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 228 HVHRQREDAQRAGPPQYQEPRPQD 157
           HV +QR   QR G  Q Q PRP D
Sbjct: 119 HVAQQRPVHQRPGGQQAQRPRPAD 142

>IF2_BRUAB (Q57AA0) Translation initiation factor IF-2|
          Length = 959

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 228 HVHRQREDAQRAGPPQYQEPRPQD 157
           HV +QR   QR G  Q Q PRP D
Sbjct: 119 HVAQQRPVHQRPGGQQAQRPRPAD 142

>IF2_BRUA2 (Q2YQR7) Translation initiation factor IF-2|
          Length = 959

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 228 HVHRQREDAQRAGPPQYQEPRPQD 157
           HV +QR   QR G  Q Q PRP D
Sbjct: 119 HVAQQRPVHQRPGGQQAQRPRPAD 142

>SYI_MYCGE (P47587) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 895

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 5   FITSLVFLTSALTENSN*VATSFHTHPWTFPSNEAI 112
           ++T  V  +  L EN+N +  +  T PWT P+N+AI
Sbjct: 210 YLTFKVSKSDFLDENANLLVWT--TTPWTLPTNQAI 243

>FLGH_PHOPR (Q6LTQ7) Flagellar L-ring protein precursor (Basal body L-ring|
           protein)
          Length = 256

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 243 DGGLLHVHRQREDAQRAGPPQYQEPRPQ 160
           D GL+ + R+RED Q AG P +   RPQ
Sbjct: 44  DSGLIDMLRRREDPQ-AGDPAWNPIRPQ 70

>ILVD_PROMM (Q7TV16) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)|
          Length = 556

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 174 EPRPQDDRIHREVKWILHRGYIASLLGNV--HGCV*KL 67
           EP  + D IH   K +  +G++A L GN+   GCV K+
Sbjct: 356 EPSAEQDVIHPLSKPVYAKGHLAILKGNLASEGCVAKI 393


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,653,923
Number of Sequences: 219361
Number of extensions: 761032
Number of successful extensions: 2553
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2553
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)