ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17k22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ310379.1|HVU310379 Hordeum vulgare mRNA for putative nucle... 517 e-144
2gb|AC121365.2| Oryza sativa (japonica cultivar-group) chromosome... 155 1e-34
3gb|AC111015.2| Oryza sativa (japonica cultivar-group) chromosome... 155 1e-34
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 155 1e-34
5dbj|AK109325.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 1e-34
6ref|XM_475741.1| Oryza sativa (japonica cultivar-group), predic... 153 5e-34
7gb|AY112488.1| Zea mays CL43678_1 mRNA sequence 109 7e-21
8ref|XM_477770.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.086
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.086
10dbj|AP003830.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.086
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.34
12dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
13gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.34
14gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.34
15dbj|AK119700.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.34
16dbj|AK107900.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.34
17emb|Z78205.1|BHT1UL Bovine herpesvirus type 1 UL22-35 genes 42 1.3
18emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome 42 1.3
19dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
20emb|X94677.1|BHV1ULGNS Bovine herpesvirus type 1 genes for UL[27... 42 1.3
21gb|AY395058.1| Schistosoma mansoni ecdysone-induced protein E78 ... 42 1.3
22emb|AL663008.3|OSJN00209 Oryza sativa genomic DNA, chromosome 4,... 42 1.3
23ref|XM_469110.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.3
24ref|NM_183749.1| Oryza sativa (japonica cultivar-group), predic... 40 5.3
25gb|AC159423.1| Trypanosoma brucei chromosome 8 clone RPCI93-26E1... 40 5.3
26gb|AC112209.4| Oryza sativa (japonica cultivar-group) chromosome... 40 5.3
27gb|AC159405.1| Trypanosoma brucei chromosome 8 clone RPCI93-11J1... 40 5.3
28gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence 40 5.3
29ref|XM_365538.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 5.3
30ref|XM_849855.1| PREDICTED: Canis familiaris similar to solute c... 40 5.3
31ref|XM_818417.1| Trypanosoma brucei TREU927 clone RPCI93-11J15 h... 40 5.3
32gb|AC125195.4| Mus musculus BAC clone RP23-246M2 from 2, complet... 40 5.3
33emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 5.3
34gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 5.3
35dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
36dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
37dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
38dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
39dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.3
40gb|AC135600.3| Oryza sativa chromosome 3 BAC OSJNBb0047K21 genom... 40 5.3
41dbj|AP003208.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
42dbj|AP003793.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
43dbj|AP003414.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
44dbj|AP004735.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
45dbj|AP003921.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
46dbj|AP004734.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
47dbj|AK072969.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
48gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.3
49gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.3
50emb|AL732649.3|CNS08C9O Oryza sativa chromosome 12, . BAC OSJNBb... 40 5.3
51emb|AL954852.5|CNS08CD6 Oryza sativa chromosome 12, . BAC OJ1573... 40 5.3
52emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 40 5.3
53emb|AL773582.6| Mouse DNA sequence from clone RP23-174J23 on chr... 40 5.3
54emb|AJ233625.1|OCU233625 Oryctolagus cuniculus endogenous retrov... 40 5.3
55gb|L23501.1|HUMKPRWI Homo sapiens Prader-Willi chromosome DNA fr... 40 5.3 
>emb|AJ310379.1|HVU310379 Hordeum vulgare mRNA for putative nuclear protein (s40 gene)
          Length = 417

 Score =  517 bits (261), Expect = e-144
 Identities = 261/261 (100%)
 Strand = Plus / Minus

                                                                       
Query: 135 tcacttctcgatgaatccggtcatcctgaggacgaggttcctgatattgcggaggtcccg 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tcacttctcgatgaatccggtcatcctgaggacgaggttcctgatattgcggaggtcccg 358

                                                                       
Query: 195 ccctttgagcgtcctccctttgccggtgcacatggagtaggccgccgtcgacctcccggc 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ccctttgagcgtcctccctttgccggtgcacatggagtaggccgccgtcgacctcccggc 298

                                                                       
Query: 255 gagcctccgccgtcgctcggccaggacgtggggcggcacgttcctcttcgcgtcgttggt 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gagcctccgccgtcgctcggccaggacgtggggcggcacgttcctcttcgcgtcgttggt 238

                                                                       
Query: 315 acatcggacgtcgccgtcgctgcagtcgtcgttgccactgccgctcccgtcggacgacgc 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 acatcggacgtcgccgtcgctgcagtcgtcgttgccactgccgctcccgtcggacgacgc 178

                                
Query: 375 cgtccaggatcgagaccgccg 395
           |||||||||||||||||||||
Sbjct: 177 cgtccaggatcgagaccgccg 157
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>gb|AC121365.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0053E05, complete sequence
          Length = 196284

 Score =  155 bits (78), Expect = 1e-34
 Identities = 102/110 (92%)
 Strand = Plus / Minus

                                                                         
Query: 134   ttcacttctcgatgaatccggtcatcctgaggacgaggttcctgatattgcggaggtccc 193
             |||| |||||||||||||||||||||  |||||||||||||||||  |||||||||||||
Sbjct: 13006 ttcatttctcgatgaatccggtcatctggaggacgaggttcctgacgttgcggaggtccc 12947

                                                               
Query: 194   gccctttgagcgtcctccctttgccggtgcacatggagtaggccgccgtc 243
             ||||||||||||||||||| ||||||| |||||||||||| |||||||||
Sbjct: 12946 gccctttgagcgtcctccccttgccggcgcacatggagtacgccgccgtc 12897
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>gb|AC111015.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1131_E09,
             complete sequence
          Length = 94399

 Score =  155 bits (78), Expect = 1e-34
 Identities = 102/110 (92%)
 Strand = Plus / Minus

                                                                         
Query: 134   ttcacttctcgatgaatccggtcatcctgaggacgaggttcctgatattgcggaggtccc 193
             |||| |||||||||||||||||||||  |||||||||||||||||  |||||||||||||
Sbjct: 79298 ttcatttctcgatgaatccggtcatctggaggacgaggttcctgacgttgcggaggtccc 79239

                                                               
Query: 194   gccctttgagcgtcctccctttgccggtgcacatggagtaggccgccgtc 243
             ||||||||||||||||||| ||||||| |||||||||||| |||||||||
Sbjct: 79238 gccctttgagcgtcctccccttgccggcgcacatggagtacgccgccgtc 79189
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  155 bits (78), Expect = 1e-34
 Identities = 102/110 (92%)
 Strand = Plus / Minus

                                                                            
Query: 134      ttcacttctcgatgaatccggtcatcctgaggacgaggttcctgatattgcggaggtccc 193
                |||| |||||||||||||||||||||  |||||||||||||||||  |||||||||||||
Sbjct: 26161958 ttcatttctcgatgaatccggtcatctggaggacgaggttcctgacgttgcggaggtccc 26161899

                                                                  
Query: 194      gccctttgagcgtcctccctttgccggtgcacatggagtaggccgccgtc 243
                ||||||||||||||||||| ||||||| |||||||||||| |||||||||
Sbjct: 26161898 gccctttgagcgtcctccccttgccggcgcacatggagtacgccgccgtc 26161849
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>dbj|AK109325.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-H07, full
           insert sequence
          Length = 744

 Score =  155 bits (78), Expect = 1e-34
 Identities = 102/110 (92%)
 Strand = Plus / Minus

                                                                       
Query: 134 ttcacttctcgatgaatccggtcatcctgaggacgaggttcctgatattgcggaggtccc 193
           |||| |||||||||||||||||||||  |||||||||||||||||  |||||||||||||
Sbjct: 475 ttcatttctcgatgaatccggtcatctggaggacgaggttcctgacgttgcggaggtccc 416

                                                             
Query: 194 gccctttgagcgtcctccctttgccggtgcacatggagtaggccgccgtc 243
           ||||||||||||||||||| ||||||| |||||||||||| |||||||||
Sbjct: 415 gccctttgagcgtcctccccttgccggcgcacatggagtacgccgccgtc 366
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>ref|XM_475741.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 429

 Score =  153 bits (77), Expect = 5e-34
 Identities = 98/105 (93%)
 Strand = Plus / Minus

                                                                       
Query: 139 ttctcgatgaatccggtcatcctgaggacgaggttcctgatattgcggaggtcccgccct 198
           |||||||||||||||||||||  |||||||||||||||||  ||||||||||||||||||
Sbjct: 425 ttctcgatgaatccggtcatctggaggacgaggttcctgacgttgcggaggtcccgccct 366

                                                        
Query: 199 ttgagcgtcctccctttgccggtgcacatggagtaggccgccgtc 243
           |||||||||||||| ||||||| |||||||||||| |||||||||
Sbjct: 365 ttgagcgtcctccccttgccggcgcacatggagtacgccgccgtc 321
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>gb|AY112488.1| Zea mays CL43678_1 mRNA sequence
          Length = 595

 Score =  109 bits (55), Expect = 7e-21
 Identities = 91/103 (88%)
 Strand = Plus / Plus

                                                                       
Query: 141 ctcgatgaatccggtcatcctgaggacgaggttcctgatattgcggaggtcccgcccttt 200
           ||||||||| || |||||| |||||||||||| || ||  | ||||||||| ||||||||
Sbjct: 248 ctcgatgaagcctgtcatcttgaggacgaggtcccggacgtcgcggaggtcgcgcccttt 307

                                                      
Query: 201 gagcgtcctccctttgccggtgcacatggagtaggccgccgtc 243
           |||||||||||| ||||| | ||||||||||||||||||||||
Sbjct: 308 gagcgtcctccccttgccagcgcacatggagtaggccgccgtc 350
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>ref|XM_477770.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 474

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 323 cgtcgccgtcgctgcagtcgtcgttgccact 353
           ||||||||||||| |||||||||| ||||||
Sbjct: 110 cgtcgccgtcgctccagtcgtcgtcgccact 80
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 323      cgtcgccgtcgctgcagtcgtcgttgccact 353
                ||||||||||||| |||||||||| ||||||
Sbjct: 14042424 cgtcgccgtcgctccagtcgtcgtcgccact 14042394
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>dbj|AP003830.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1423_A11
          Length = 98377

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 323   cgtcgccgtcgctgcagtcgtcgttgccact 353
             ||||||||||||| |||||||||| ||||||
Sbjct: 18383 cgtcgccgtcgctccagtcgtcgtcgccact 18353
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 183    gcggaggtcccgccctttgagcgtcctccc 212
              ||||||||| ||||| ||||||||||||||
Sbjct: 760077 gcggaggtcgcgccccttgagcgtcctccc 760048



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 323      cgtcgccgtcgctgcagtcgtcgt 346
                ||||||||||||| ||||||||||
Sbjct: 25509304 cgtcgccgtcgctccagtcgtcgt 25509327
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 183    gcggaggtcccgccctttgagcgtcctccc 212
              ||||||||| ||||| ||||||||||||||
Sbjct: 760075 gcggaggtcgcgccccttgagcgtcctccc 760046



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 323      cgtcgccgtcgctgcagtcgtcgt 346
                ||||||||||||| ||||||||||
Sbjct: 25600613 cgtcgccgtcgctccagtcgtcgt 25600636
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>gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0090O10, complete sequence
          Length = 162132

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 183   gcggaggtcccgccctttgagcgtcctccc 212
             ||||||||| ||||| ||||||||||||||
Sbjct: 55622 gcggaggtcgcgccccttgagcgtcctccc 55593
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>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0005F16,
              complete sequence
          Length = 160053

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 183    gcggaggtcccgccctttgagcgtcctccc 212
              ||||||||| ||||| ||||||||||||||
Sbjct: 145958 gcggaggtcgcgccccttgagcgtcctccc 145929
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>dbj|AK119700.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-D07, full
           insert sequence
          Length = 777

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 183 gcggaggtcccgccctttgagcgtcctccc 212
           ||||||||| ||||| ||||||||||||||
Sbjct: 655 gcggaggtcgcgccccttgagcgtcctccc 626
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>dbj|AK107900.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-134-F07, full
           insert sequence
          Length = 804

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 183 gcggaggtcccgccctttgagcgtcctccc 212
           ||||||||| ||||| ||||||||||||||
Sbjct: 655 gcggaggtcgcgccccttgagcgtcctccc 626
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>emb|Z78205.1|BHT1UL Bovine herpesvirus type 1 UL22-35 genes
          Length = 37000

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 224   acatggagtaggccgccgtcgacct 248
             |||||||| ||||||||||||||||
Sbjct: 17553 acatggagaaggccgccgtcgacct 17529
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>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome
          Length = 135301

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 224   acatggagtaggccgccgtcgacct 248
             |||||||| ||||||||||||||||
Sbjct: 48353 acatggagaaggccgccgtcgacct 48329
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 326      cgccgtcgctgcagtcgtcgttgcc 350
                |||||||||| ||||||||||||||
Sbjct: 11615952 cgccgtcgctccagtcgtcgttgcc 11615976
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>emb|X94677.1|BHV1ULGNS Bovine herpesvirus type 1 genes for UL[27,28,29,30,31]
          Length = 10500

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 224  acatggagtaggccgccgtcgacct 248
            |||||||| ||||||||||||||||
Sbjct: 3277 acatggagaaggccgccgtcgacct 3253
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>gb|AY395058.1| Schistosoma mansoni ecdysone-induced protein E78 (E78) mRNA, complete
            cds
          Length = 1864

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 342  gtcgttgccactgccgctccc 362
            |||||||||||||||||||||
Sbjct: 1385 gtcgttgccactgccgctccc 1365
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>emb|AL663008.3|OSJN00209 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0058J09,
             complete sequence
          Length = 164911

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 326   cgccgtcgctgcagtcgtcgttgcc 350
             |||||||||| ||||||||||||||
Sbjct: 98962 cgccgtcgctccagtcgtcgttgcc 98986
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>ref|XM_469110.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 357

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 323 cgtcgccgtcgctgcagtcgtcgt 346
           ||||||||||||| ||||||||||
Sbjct: 307 cgtcgccgtcgctccagtcgtcgt 284
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>ref|NM_183749.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 648

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 323 cgtcgccgtcgctgcagtcgtcgttgcc 350
           ||||||||||||| | ||||||||||||
Sbjct: 552 cgtcgccgtcgctccggtcgtcgttgcc 525
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>gb|AC159423.1| Trypanosoma brucei chromosome 8 clone RPCI93-26E13, complete sequence
          Length = 147087

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 292    acgttcctcttcgcgtcgtt 311
              ||||||||||||||||||||
Sbjct: 125414 acgttcctcttcgcgtcgtt 125395
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>gb|AC112209.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0030I09 map C83B, complete sequence
          Length = 123477

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 185   ggaggtcccgccctttgagcgtcctccc 212
             ||||||| ||||| ||||||||||||||
Sbjct: 99238 ggaggtcgcgccccttgagcgtcctccc 99265
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>gb|AC159405.1| Trypanosoma brucei chromosome 8 clone RPCI93-11J15, complete sequence
          Length = 164873

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 292    acgttcctcttcgcgtcgtt 311
              ||||||||||||||||||||
Sbjct: 128027 acgttcctcttcgcgtcgtt 128046
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>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 292     acgttcctcttcgcgtcgtt 311
               ||||||||||||||||||||
Sbjct: 1743163 acgttcctcttcgcgtcgtt 1743144
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>ref|XM_365538.1| Magnaporthe grisea 70-15 hypothetical protein (MG02240.4) partial
           mRNA
          Length = 3444

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 299 tcttcgcgtcgttggtacat 318
           ||||||||||||||||||||
Sbjct: 989 tcttcgcgtcgttggtacat 970
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>ref|XM_849855.1| PREDICTED: Canis familiaris similar to solute carrier family 39 (zinc
            transporter), member 3 isoform a (LOC612127), mRNA
          Length = 1129

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 285  gggcggcacgttcctcttcg 304
            ||||||||||||||||||||
Sbjct: 991  gggcggcacgttcctcttcg 1010
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>ref|XM_818417.1| Trypanosoma brucei TREU927 clone RPCI93-11J15 hypothetical protein
           (Tb927.8.5940) partial mRNA
          Length = 1419

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 292 acgttcctcttcgcgtcgtt 311
           ||||||||||||||||||||
Sbjct: 735 acgttcctcttcgcgtcgtt 716
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>gb|AC125195.4| Mus musculus BAC clone RP23-246M2 from 2, complete sequence
          Length = 195041

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    catctcttgtctttcttacc 31
             ||||||||||||||||||||
Sbjct: 21669 catctcttgtctttcttacc 21650
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 323    cgtcgccgtcgctgcagtcgtcgt 346
              ||||||||||||||| ||||||||
Sbjct: 150477 cgtcgccgtcgctgccgtcgtcgt 150454
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 366     ggacgacgccgtccaggatc 385
               ||||||||||||||||||||
Sbjct: 4359630 ggacgacgccgtccaggatc 4359611
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 321      gacgtcgccgtcgctgcagt 340
                ||||||||||||||||||||
Sbjct: 24675444 gacgtcgccgtcgctgcagt 24675425



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 323     cgtcgccgtcgctgcagtcgtcgt 346
               ||||||||||||| ||||||||||
Sbjct: 6403069 cgtcgccgtcgctccagtcgtcgt 6403092
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 185     ggaggtcccgccctttgagcgtcctccc 212
               ||||||| ||||| ||||||||||||||
Sbjct: 2523166 ggaggtcgcgccccttgagcgtcctccc 2523139
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 323      cgtcgccgtcgctgcagtcgtcgt 346
                ||||||||||||| ||||||||||
Sbjct: 15954056 cgtcgccgtcgctccagtcgtcgt 15954079
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 323      cgtcgccgtcgctgcagtcgtcgttgcc 350
                ||||||||||||| | ||||||||||||
Sbjct: 13144754 cgtcgccgtcgctccggtcgtcgttgcc 13144781



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 323      cgtcgccgtcgctgcagtcgtcgttgcc 350
                ||||||||||||| | ||||||||||||
Sbjct: 12034390 cgtcgccgtcgctccggtcgtcgttgcc 12034363
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 272     cggccaggacgtggggcggc 291
               ||||||||||||||||||||
Sbjct: 8457475 cggccaggacgtggggcggc 8457494
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>gb|AC135600.3| Oryza sativa chromosome 3 BAC OSJNBb0047K21 genomic sequence, complete
             sequence
          Length = 117046

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 323   cgtcgccgtcgctgcagtcgtcgt 346
             ||||||||||||| ||||||||||
Sbjct: 25548 cgtcgccgtcgctccagtcgtcgt 25525
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>dbj|AP003208.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1158F07
          Length = 139491

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 323    cgtcgccgtcgctgcagtcgtcgttgcc 350
              ||||||||||||| | ||||||||||||
Sbjct: 120475 cgtcgccgtcgctccggtcgtcgttgcc 120502
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>dbj|AP003793.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0487E11
          Length = 151303

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 323   cgtcgccgtcgctgcagtcgtcgttgcc 350
             ||||||||||||| | ||||||||||||
Sbjct: 17055 cgtcgccgtcgctccggtcgtcgttgcc 17082
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>dbj|AP003414.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1153F04
          Length = 158174

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 323  cgtcgccgtcgctgcagtcgtcgttgcc 350
            ||||||||||||| | ||||||||||||
Sbjct: 1330 cgtcgccgtcgctccggtcgtcgttgcc 1303
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>dbj|AP004735.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0031P18
          Length = 156535

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 323   cgtcgccgtcgctgcagtcgtcgt 346
             ||||||||||||| ||||||||||
Sbjct: 87505 cgtcgccgtcgctccagtcgtcgt 87528
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>dbj|AP003921.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0028G04
          Length = 159761

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 323   cgtcgccgtcgctgcagtcgtcgttgcc 350
             ||||||||||||| | ||||||||||||
Sbjct: 80054 cgtcgccgtcgctccggtcgtcgttgcc 80027
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>dbj|AP004734.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0026P23
          Length = 180188

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 323    cgtcgccgtcgctgcagtcgtcgt 346
              ||||||||||||| ||||||||||
Sbjct: 167059 cgtcgccgtcgctccagtcgtcgt 167082
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>dbj|AK072969.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023144D16, full
           insert sequence
          Length = 964

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 185 ggaggtcccgccctttgagcgtcctccc 212
           ||||||| ||||| ||||||||||||||
Sbjct: 579 ggaggtcgcgccccttgagcgtcctccc 552
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 185     ggaggtcccgccctttgagcgtcctccc 212
               ||||||| ||||| ||||||||||||||
Sbjct: 2532197 ggaggtcgcgccccttgagcgtcctccc 2532170
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 321      gacgtcgccgtcgctgcagt 340
                ||||||||||||||||||||
Sbjct: 24603650 gacgtcgccgtcgctgcagt 24603631



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 323     cgtcgccgtcgctgcagtcgtcgt 346
               ||||||||||||| ||||||||||
Sbjct: 6402944 cgtcgccgtcgctccagtcgtcgt 6402967
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>emb|AL732649.3|CNS08C9O Oryza sativa chromosome 12, . BAC OSJNBb0067N05 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 109555

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 323   cgtcgccgtcgctgcagtcgtcgt 346
             ||||||||||||| ||||||||||
Sbjct: 64617 cgtcgccgtcgctccagtcgtcgt 64640
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>emb|AL954852.5|CNS08CD6 Oryza sativa chromosome 12, . BAC OJ1573_A06 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 143895

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 321    gacgtcgccgtcgctgcagt 340
              ||||||||||||||||||||
Sbjct: 120310 gacgtcgccgtcgctgcagt 120291
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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 340     tcgtcgttgccactgccgctcccg 363
               |||||| |||||||||||||||||
Sbjct: 2945493 tcgtcgctgccactgccgctcccg 2945470
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>emb|AL773582.6| Mouse DNA sequence from clone RP23-174J23 on chromosome 2, complete
             sequence
          Length = 206309

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    catctcttgtctttcttacc 31
             ||||||||||||||||||||
Sbjct: 99016 catctcttgtctttcttacc 98997
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>emb|AJ233625.1|OCU233625 Oryctolagus cuniculus endogenous retroviral sequence ERV-L pol
           gene, clone ERV-L Rabbit1
          Length = 303

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 63  ccacaagctttcacacacatccat 86
           |||||||||||||||| |||||||
Sbjct: 271 ccacaagctttcacactcatccat 294
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>gb|L23501.1|HUMKPRWI Homo sapiens Prader-Willi chromosome DNA fragment
          Length = 2965

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 258  cctccgccgtcgctcggccaggac 281
            ||||||||||||||| ||||||||
Sbjct: 2621 cctccgccgtcgctcagccaggac 2598


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,286,688
Number of Sequences: 3902068
Number of extensions: 2286688
Number of successful extensions: 44037
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43197
Number of HSP's gapped (non-prelim): 840
length of query: 395
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 373
effective length of database: 17,147,199,772
effective search space: 6395905514956
effective search space used: 6395905514956
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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