ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd17k20 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 854 bits (431), Expect = 0.0 Identities = 436/438 (99%) Strand = Plus / Minus Query: 10 aatgggtatactnaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 69 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1392 aatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 1333 Query: 70 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1332 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 1273 Query: 130 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1272 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 1213 Query: 190 ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttaccgtagaaggaacc 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1212 ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttaccgtagaaggaacc 1153 Query: 250 agtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1152 agtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 1093 Query: 310 aagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcag 369 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1092 aagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcag 1033 Query: 370 cttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccag 429 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1032 cttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccag 973 Query: 430 cctcttgccaatgttctc 447 |||||||||||||||||| Sbjct: 972 cctcttgccaatgttctc 955
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 474 bits (239), Expect = e-130 Identities = 314/339 (92%) Strand = Plus / Minus Query: 109 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 168 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430 Query: 169 gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 228 | |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370 Query: 229 tcctttaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgc 288 |||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| Sbjct: 1369 tcctttaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgc 1310 Query: 289 ctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgag 348 |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| || Sbjct: 1309 ctggctcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaag 1250 Query: 349 catgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacggg 408 |||||| |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| Sbjct: 1249 catgtggccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacggg 1190 Query: 409 cccgtcccgcgagttcaccagcctcttgccaatgttctc 447 ||||||||||||||||||||||||||||| |||||||| Sbjct: 1189 tccgtcccgcgagttcaccagcctcttgccgatgttctc 1151
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 442 bits (223), Expect = e-121 Identities = 235/238 (98%), Gaps = 1/238 (0%) Strand = Plus / Minus Query: 1 gtctttgccaa-tgggtatactnaatatatttagagatatattaacaaaacatgcccagc 59 ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 7762 gtctttgccaaatgggtatacacaatatatttagagatatattaacaaaacatgcccagc 7703 Query: 60 aatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatg 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7702 aatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatg 7643 Query: 120 cttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7642 cttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 7583 Query: 180 cattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7582 cattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 7525 Score = 422 bits (213), Expect = e-115 Identities = 213/213 (100%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7305 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 7246 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7245 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 7186 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7185 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 7126 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 ||||||||||||||||||||||||||||||||| Sbjct: 7125 ccgcgagttcaccagcctcttgccaatgttctc 7093 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 311 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 370 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902 Query: 371 ttctcgactgtcatctttggctgctcgaa 399 ||||| | |||||||| ||||| ||||| Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 422 bits (213), Expect = e-115 Identities = 213/213 (100%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1422 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1363 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1362 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1303 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1302 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 1243 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 ||||||||||||||||||||||||||||||||| Sbjct: 1242 ccgcgagttcaccagcctcttgccaatgttctc 1210 Score = 383 bits (193), Expect = e-103 Identities = 226/232 (97%), Gaps = 4/232 (1%) Strand = Plus / Minus Query: 10 aatgggtatactnaatat-atttagagatatattaacaaaacatgcccagcaatcgcttg 68 ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1702 aatgggtatacacaatattatttagagatatattaacaaaacatgcccagcaatcgcttg 1643 Query: 69 gatgcgatgcggacttag-gtaggtaaaacatcagatattaaaagtggcatgcttaaaag 127 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1642 gatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatgcttaaaag 1583 Query: 128 gtgtaaaggcagctgccgt-cgtcgctccttgccgttgggtcgtagttcttggcattttg 186 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1582 gtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttcttggcattttg 1523 Query: 187 gtcggtgcaaccttccggca-cgggcaaagtaccttgctgtgctcctttacc 237 |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 1522 gtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttacc 1471
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 383 bits (193), Expect = e-103 Identities = 208/213 (97%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 286 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 227 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 226 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 167 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| Sbjct: 166 cccgtactctagcagcttctcgactgtcatctttggctgctcaaaggtcactggtccgtc 107 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 |||||||||||| ||| |||||||||||||||| Sbjct: 106 ccgcgagttcacaagcttcttgccaatgttctc 74
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 375 bits (189), Expect = e-101 Identities = 207/213 (97%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 492 accgtagaaggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 433 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 432 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 373 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 ||||||||||||||||||||| |||||||||||||||||||| |||||||| || ||||| Sbjct: 372 cccgtactctagcagcttctccactgtcatctttggctgctcaaaggtcactggtccgtc 313 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 |||||||||||||||| |||||||||||||||| Sbjct: 312 ccgcgagttcaccagcttcttgccaatgttctc 280 Score = 246 bits (124), Expect = 5e-62 Identities = 189/208 (90%), Gaps = 7/208 (3%) Strand = Plus / Minus Query: 36 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 89 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 746 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 687 Query: 90 ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 149 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 686 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 628 Query: 150 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 209 | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || | Sbjct: 627 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 568 Query: 210 gcaaagtaccttgctgtgctcctttacc 237 ||||||||||||||||||| |||||||| Sbjct: 567 gcaaagtaccttgctgtgcccctttacc 540
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 375 bits (189), Expect = e-101 Identities = 207/213 (97%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1342 accgtagaaggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1283 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1282 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1223 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 ||||||||||||||||||||| |||||||||||||||||||| |||||||| || ||||| Sbjct: 1222 cccgtactctagcagcttctccactgtcatctttggctgctcaaaggtcactggtccgtc 1163 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 |||||||||||||||| |||||||||||||||| Sbjct: 1162 ccgcgagttcaccagcttcttgccaatgttctc 1130 Score = 246 bits (124), Expect = 5e-62 Identities = 189/208 (90%), Gaps = 7/208 (3%) Strand = Plus / Minus Query: 36 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 89 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537 Query: 90 ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 149 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478 Query: 150 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 209 | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || | Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418 Query: 210 gcaaagtaccttgctgtgctcctttacc 237 ||||||||||||||||||| |||||||| Sbjct: 1417 gcaaagtaccttgctgtgcccctttacc 1390
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 303 bits (153), Expect = 3e-79 Identities = 198/213 (92%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| Sbjct: 1353 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1294 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1293 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1234 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||||| Sbjct: 1233 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1174 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 |||||||||||||||||||||||| |||||||| Sbjct: 1173 ccgcgagttcaccagcctcttgccgatgttctc 1141 Score = 180 bits (91), Expect = 3e-42 Identities = 171/195 (87%), Gaps = 7/195 (3%) Strand = Plus / Minus Query: 50 catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 103 ||||||||||| ||||||| ||||||||||| |||||||| || |||||||||| Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534 Query: 104 -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 162 || | |||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474 Query: 163 tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 222 ||||||| |||||||||||| ||||||| |||||||||||||| |||||||| ||||| Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414 Query: 223 ctgtgctcctttacc 237 |||||||||||||| Sbjct: 1413 ttgtgctcctttacc 1399
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 236 bits (119), Expect = 5e-59 Identities = 280/333 (84%), Gaps = 3/333 (0%) Strand = Plus / Minus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371 Query: 178 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 234 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1311 Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 1310 cccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1251 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1250 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1191 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 1190 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1131 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 1130 cctcgagttcaccagcctcttgccaatgttctc 1098
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 236 bits (119), Expect = 5e-59 Identities = 280/333 (84%), Gaps = 3/333 (0%) Strand = Plus / Minus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406 Query: 178 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 234 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1346 Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 1345 cccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1286 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1285 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1226 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 1225 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1166 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 1165 cctcgagttcaccagcctcttgccaatgttctc 1133
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||||||||||||||||||| |||| Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252 Score = 121 bits (61), Expect = 2e-24 Identities = 175/213 (82%) Strand = Plus / Plus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 108310 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 108369 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 108370 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 108429 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 108430 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 108489 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 108490 cctcgagttcaccagcctcttgccaatgttctc 108522 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 136 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 195 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112 Query: 196 accttccggcacggg 210 || |||||||||| Sbjct: 112113 tcccgccggcacggg 112127 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 419 gagttcaccagcctcttgccaatgttctc 447 ||||||||||||||| |||| |||||||| Sbjct: 112324 gagttcaccagcctcctgccgatgttctc 112352
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||||||||||||||||||| |||| Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133 Score = 121 bits (61), Expect = 2e-24 Identities = 175/213 (82%) Strand = Plus / Plus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 30187 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 30246 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 30247 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 30306 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 30307 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 30366 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 30367 cctcgagttcaccagcctcttgccaatgttctc 30399 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 136 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 195 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989 Query: 196 accttccggcacggg 210 || |||||||||| Sbjct: 33990 tcccgccggcacggg 34004 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 419 gagttcaccagcctcttgccaatgttctc 447 ||||||||||||||| |||| |||||||| Sbjct: 34201 gagttcaccagcctcctgccgatgttctc 34229
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||||||||||||||||||| |||| Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426 Score = 121 bits (61), Expect = 2e-24 Identities = 175/213 (82%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 1315 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1256 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1255 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1196 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 1195 tccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1136 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 1135 cctcgagttcaccagcctcttgccaatgttctc 1103
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||||||||||||||||||| |||| Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395 Score = 121 bits (61), Expect = 2e-24 Identities = 175/213 (82%) Strand = Plus / Plus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 28303449 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 28303508 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 28303509 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 28303568 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 28303569 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 28303628 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 28303629 cctcgagttcaccagcctcttgccaatgttctc 28303661 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 136 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 195 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251 Query: 196 accttccggcacggg 210 || |||||||||| Sbjct: 28307252 tcccgccggcacggg 28307266 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 419 gagttcaccagcctcttgccaatgttctc 447 ||||||||||||||| |||| |||||||| Sbjct: 28307463 gagttcaccagcctcctgccgatgttctc 28307491
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||||||||||||||||||| |||| Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggca 1420 Score = 121 bits (61), Expect = 2e-24 Identities = 175/213 (82%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 1309 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1250 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1249 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1190 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 1189 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1130 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 1129 cctcgagttcaccagcctcttgccaatgttctc 1097
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||||||||||||||||||| |||| Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggca 1458 Score = 121 bits (61), Expect = 2e-24 Identities = 175/213 (82%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 1347 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1288 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1287 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1228 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 1227 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1168 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 1167 cctcgagttcaccagcctcttgccaatgttctc 1135
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||||||||||||||||||| |||| Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggca 1457 Score = 121 bits (61), Expect = 2e-24 Identities = 175/213 (82%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 1346 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1287 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1286 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1227 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 1226 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1167 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 1166 cctcgagttcaccagcctcttgccaatgttctc 1134
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||||||||||||||||||| |||| Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggca 1241 Score = 121 bits (61), Expect = 2e-24 Identities = 175/213 (82%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 1130 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1071 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1070 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1011 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 1010 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 951 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 950 cctcgagttcaccagcctcttgccaatgttctc 918
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||||||||||||||||||| |||| Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844 Score = 121 bits (61), Expect = 2e-24 Identities = 175/213 (82%) Strand = Plus / Plus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 28285898 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 28285957 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 28285958 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 28286017 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 28286018 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 28286077 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 28286078 cctcgagttcaccagcctcttgccaatgttctc 28286110 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 136 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 195 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700 Query: 196 accttccggcacggg 210 || |||||||||| Sbjct: 28289701 tcccgccggcacggg 28289715 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 419 gagttcaccagcctcttgccaatgttctc 447 ||||||||||||||| |||| |||||||| Sbjct: 28289912 gagttcaccagcctcctgccgatgttctc 28289940
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||||||||||||||||||| |||| Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggca 1462 Score = 121 bits (61), Expect = 2e-24 Identities = 175/213 (82%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 1351 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1292 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1291 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1232 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 1231 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1172 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 1171 cctcgagttcaccagcctcttgccaatgttctc 1139
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small isoform precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 93 Score = 121 bits (61), Expect = 2e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 124 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 183 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 93 aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34 Query: 184 ttggtcggtgcaaccttccggcacgggca 212 |||||||||||||||||||||| |||| Sbjct: 33 agggtcggtgcaaccttccggcacaggca 5
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 121 bits (61), Expect = 2e-24 Identities = 175/213 (82%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 564 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 505 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 504 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 445 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 444 tccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 385 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 384 cctcgagttcaccagcctcttgccaatgttctc 352
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 121 bits (61), Expect = 2e-24 Identities = 175/213 (82%) Strand = Plus / Minus Query: 235 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 294 |||||||||||||||||||||||| || || |||||| ||||| ||||| |||| ||| Sbjct: 1358 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1299 Query: 295 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 354 || ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1298 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1239 Query: 355 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 414 |||||||| | ||||| |||| |||||||| ||||||||||| | || || || Sbjct: 1238 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1179 Query: 415 ccgcgagttcaccagcctcttgccaatgttctc 447 || |||||||||||||||||||||||||||||| Sbjct: 1178 cctcgagttcaccagcctcttgccaatgttctc 1146 Score = 117 bits (59), Expect = 3e-23 Identities = 87/95 (91%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 ||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||||||||||||||||||| |||| Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggca 1469
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 119 bits (60), Expect = 8e-24 Identities = 165/200 (82%) Strand = Plus / Minus Query: 239 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 298 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1000 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 941 Query: 299 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 358 || |||| || |||||||| | ||| || || ||||||||||| || ||||||| ||| Sbjct: 940 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 881 Query: 359 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 418 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 880 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 821 Query: 419 gagttcaccagcctcttgcc 438 |||||||||||||||||||| Sbjct: 820 gagttcaccagcctcttgcc 801 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 128 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 187 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090 Query: 188 tcggtgcaaccttc 201 ||||| |||||||| Sbjct: 1089 tcggtacaaccttc 1076
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 119 bits (60), Expect = 8e-24 Identities = 165/200 (82%) Strand = Plus / Minus Query: 239 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 298 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135 Query: 299 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 358 || |||| || |||||||| | ||| || || ||||||||||| || ||||||| ||| Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075 Query: 359 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 418 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1015 Query: 419 gagttcaccagcctcttgcc 438 |||||||||||||||||||| Sbjct: 1014 gagttcaccagcctcttgcc 995 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 128 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 187 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246 Query: 188 tcggtgcaaccttc 201 ||||| |||||||| Sbjct: 1245 tcggtacaaccttc 1232
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic sequence Length = 234 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 |||||||||| | |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||| |||||||||||||| |||| Sbjct: 75 ggcaacagggtcgggtcaaccttccggcacaggca 41
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 97.6 bits (49), Expect = 3e-17 Identities = 160/197 (81%) Strand = Plus / Minus Query: 239 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 298 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1301 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1242 Query: 299 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 358 || |||| || |||||||| | ||| || || ||||| ||||| || ||||| | ||| Sbjct: 1241 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1182 Query: 359 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 418 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1181 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1122 Query: 419 gagttcaccagcctctt 435 ||||||||||||||||| Sbjct: 1121 gagttcaccagcctctt 1105 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 128 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 187 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391 Query: 188 tcggtgcaaccttc 201 ||||| |||||||| Sbjct: 1390 tcggtacaaccttc 1377
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 97.6 bits (49), Expect = 3e-17 Identities = 160/197 (81%) Strand = Plus / Minus Query: 239 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 298 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1164 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1105 Query: 299 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 358 || |||| || |||||||| | ||| || || ||||| ||||| || ||||| | ||| Sbjct: 1104 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1045 Query: 359 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 418 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1044 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 985 Query: 419 gagttcaccagcctctt 435 ||||||||||||||||| Sbjct: 984 gagttcaccagcctctt 968 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 128 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 187 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216 Query: 188 tcggtgcaaccttc 201 ||||| |||||||| Sbjct: 1215 tcggtacaaccttc 1202
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 95.6 bits (48), Expect = 1e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 240 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 299 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860 Query: 300 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 359 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800 Query: 360 actctagcagcttctcgactgtcatctttggctgctcgaa 399 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 95.6 bits (48), Expect = 1e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 240 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 299 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 300 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 359 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 360 actctagcagcttctcgactgtcatctttggctgctcgaa 399 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 95.6 bits (48), Expect = 1e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 240 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 299 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 300 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 359 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 360 actctagcagcttctcgactgtcatctttggctgctcgaa 399 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 311 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 370 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333 Query: 371 ttctcgactgtcatctttggctgctcgaa 399 ||||| | |||||||| ||||| ||||| Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase Length = 2472 Score = 79.8 bits (40), Expect = 7e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 257 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 316 |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59 Query: 317 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 372 || | ||| |||||||||||||||||||| ||||||| || |||||||||||||| Sbjct: 58 actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||||||||||||||||||| |||| Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 118 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 177 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728 Query: 178 ggcattttggtcggtgcaaccttccggcacgggca 212 |||| |||||||||||||||||||||| |||| Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 73.8 bits (37), Expect = 4e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 311 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 370 |||||||| ||||| || || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183 Query: 371 ttctcgactgtcatctttggctgctcgaa 399 ||||||| |||||||| ||||| ||||| Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaa 1154
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 56.0 bits (28), Expect = 1e-04 Identities = 106/132 (80%) Strand = Plus / Minus Query: 268 gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 327 |||||||||||| ||||| |||| ||||| ||| | ||||| | || || | ||| || Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304 Query: 328 attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 387 ||| || ||||| ||||| ||||||| |||||||| || ||||| |||| |||||||| Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244 Query: 388 tggctgctcgaa 399 ||||||||||| Sbjct: 1243 cggctgctcgaa 1232
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 44.1 bits (22), Expect = 0.39 Identities = 43/50 (86%) Strand = Plus / Minus Query: 260 gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 309 |||||||||||||||||||| || || |||| |||||||| ||||||| Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence Length = 119249 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 273 catcacccagagctgcctggct 294 |||||||||||||||||||||| Sbjct: 51275 catcacccagagctgcctggct 51254
>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence Length = 153155 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 23 aatatatttagagatatattaa 44 |||||||||||||||||||||| Sbjct: 67942 aatatatttagagatatattaa 67963
>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence Length = 177245 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 25 tatatttagagatatattaac 45 ||||||||||||||||||||| Sbjct: 12315 tatatttagagatatattaac 12335
>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence Length = 98660 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 25 tatatttagagatatattaac 45 ||||||||||||||||||||| Sbjct: 66387 tatatttagagatatattaac 66367
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 aaacatcagatattaaaagtg 114 ||||||||||||||||||||| Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 311 agctgcacacgcttgacattgtcctgctc 339 |||||||| ||||||||||| |||||||| Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 aaacatcagatattaaaagtg 114 ||||||||||||||||||||| Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 aaacatcagatattaaaagtg 114 ||||||||||||||||||||| Sbjct: 114403 aaacatcagatattaaaagtg 114423
>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence Length = 105452 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 25 tatatttagagatatattaac 45 ||||||||||||||||||||| Sbjct: 6217 tatatttagagatatattaac 6197
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel alpha subunit mRNA, partial cds Length = 3448 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 273 catcacccagagctgcctggctca 296 |||| ||||||||||||||||||| Sbjct: 1542 catcgcccagagctgcctggctca 1565
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 40.1 bits (20), Expect = 6.1 Identities = 68/84 (80%) Strand = Plus / Minus Query: 269 ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 328 ||||||||||| ||||| |||| | |||||| ||||||| | || || | |||||| Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287 Query: 329 ttgtcctgctcctggacgagcatg 352 || |||||||||||||| |||||| Sbjct: 1286 ttctcctgctcctggacaagcatg 1263
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA Length = 531 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gtcagcaagctgcacacgct 323 |||||||||||||||||||| Sbjct: 242 gtcagcaagctgcacacgct 223
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence Length = 177402 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 tcagatattaaaagtggcat 118 |||||||||||||||||||| Sbjct: 141058 tcagatattaaaagtggcat 141077
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence Length = 163782 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 tcagatattaaaagtggcat 118 |||||||||||||||||||| Sbjct: 142564 tcagatattaaaagtggcat 142583
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence Length = 204813 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 tcagatattaaaagtggcat 118 |||||||||||||||||||| Sbjct: 95930 tcagatattaaaagtggcat 95911
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA, complete cds Length = 3459 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 273 catcacccagagctgcctggctca 296 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166149 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 aatatatttagagatatatt 42 |||||||||||||||||||| Sbjct: 30454 aatatatttagagatatatt 30473
>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence Length = 161308 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 ttgacattgtcctgctcctg 342 |||||||||||||||||||| Sbjct: 126438 ttgacattgtcctgctcctg 126419
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), mRNA Length = 6183 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 273 catcacccagagctgcctggctca 296 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, section 128 of 469 of the complete genome Length = 11388 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 127 ggtgtaaaggcagctgccgtcgtcgctc 154 |||||| |||| |||||||||||||||| Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 Length = 504369 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 47 aaacatgcccagcaatcgcttgga 70 |||||||||||||||||| ||||| Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds, alternatively spliced Length = 3430 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 273 catcacccagagctgcctggctca 296 |||| ||||||||||||||||||| Sbjct: 1636 catcgcccagagctgcctggctca 1659
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds, alternatively spliced Length = 4490 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 273 catcacccagagctgcctggctca 296 |||| ||||||||||||||||||| Sbjct: 2003 catcgcccagagctgcctggctca 2026
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds, alternatively spliced Length = 6183 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 273 catcacccagagctgcctggctca 296 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15, complete sequence Length = 134752 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 tggcatgcttaaaaggtgta 132 |||||||||||||||||||| Sbjct: 78235 tggcatgcttaaaaggtgta 78254
>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence Length = 125424 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 ttgacattgtcctgctcctg 342 |||||||||||||||||||| Sbjct: 106960 ttgacattgtcctgctcctg 106979
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit (KCNMA1), mRNA Length = 3459 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 273 catcacccagagctgcctggctca 296 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18, complete sequence Length = 174701 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 aatatatttagagatatatt 42 |||||||||||||||||||| Sbjct: 62504 aatatatttagagatatatt 62485
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete sequence Length = 230848 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 98 atcagatattaaaagtggcatgct 121 ||||||||||||||||| |||||| Sbjct: 127875 atcagatattaaaagtgccatgct 127852 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,812,841 Number of Sequences: 3902068 Number of extensions: 3812841 Number of successful extensions: 67431 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 67148 Number of HSP's gapped (non-prelim): 241 length of query: 454 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 432 effective length of database: 17,147,199,772 effective search space: 7407590301504 effective search space used: 7407590301504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
