ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17k01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RDP1_SCHPO (O13862) Transcriptional activator protein rdp1 (Rhp5... 31 2.8
2ATS20_MOUSE (P59511) ADAMTS-20 precursor (EC 3.4.24.-) (A disint... 30 3.6

>RDP1_SCHPO (O13862) Transcriptional activator protein rdp1 (Rhp51-DRE-binding|
           protein 1)
          Length = 478

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +3

Query: 198 LNHRLLGTASAKAGVSDEVHLGGGLPHAHPFVRRPPAAAERDPDGGDHAVPRRDAHLA 371
           LN  L+  A + A VS + H      H HPF R+P  +A        H++PR  A  A
Sbjct: 299 LNSSLVDAAESLANVSQQQH------HRHPFARQPDYSA--------HSIPRTAAPYA 342



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>ATS20_MOUSE (P59511) ADAMTS-20 precursor (EC 3.4.24.-) (A disintegrin and|
            metalloproteinase with thrombospondin motifs 20) (ADAM-TS
            20) (ADAM-TS20)
          Length = 1906

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
 Frame = -3

Query: 219  CREACGSGSSSPLTDRLFIPDFQLKLPTQLELG-PPSLF---------DLTWFRPPWYGC 70
            C + CG G  S      F P+ Q+      EL  PPS+          D++W+R PW  C
Sbjct: 1366 CTQTCGGGVKSRFVICQF-PNGQMTQEHSCELPKPPSMMQCHLHACPEDVSWYRGPWKSC 1424


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,028,328
Number of Sequences: 219361
Number of extensions: 1262141
Number of successful extensions: 3213
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3212
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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