ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17j11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 44 0.17
2gb|AE006667.1| Sulfolobus solfataricus P2 section 26 of 272 of t... 42 0.69
3gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 2.7

>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 111     gcacgcggcgtcgcgcgcggcc 132
               ||||||||||||||||||||||
Sbjct: 4287707 gcacgcggcgtcgcgcgcggcc 4287728



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>gb|AE006667.1| Sulfolobus solfataricus P2 section 26 of 272 of the complete genome
          Length = 10379

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 58   ttattctgcgtctatcaccat 78
            |||||||||||||||||||||
Sbjct: 4951 ttattctgcgtctatcaccat 4931



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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 114     cgcggcgtcgcgcgcggccncgg 136
               ||||||||||||||||||| |||
Sbjct: 1459508 cgcggcgtcgcgcgcggcctcgg 1459530


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,675,072
Number of Sequences: 3902068
Number of extensions: 1675072
Number of successful extensions: 154851
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 154650
Number of HSP's gapped (non-prelim): 201
length of query: 215
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 193
effective length of database: 17,147,199,772
effective search space: 3309409555996
effective search space used: 3309409555996
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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