Clone Name | rbasd17j07 |
---|---|
Clone Library Name | barley_pub |
>gb|AC134516.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJA1208D02, complete sequence Length = 131922 Score = 44.1 bits (22), Expect = 0.14 Identities = 22/22 (100%) Strand = Plus / Plus Query: 16 catgcatgagccatgcatggcg 37 |||||||||||||||||||||| Sbjct: 34865 catgcatgagccatgcatggcg 34886
>gb|AC107314.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1208D02 from chromosome 10, complete sequence Length = 120132 Score = 44.1 bits (22), Expect = 0.14 Identities = 22/22 (100%) Strand = Plus / Plus Query: 16 catgcatgagccatgcatggcg 37 |||||||||||||||||||||| Sbjct: 94997 catgcatgagccatgcatggcg 95018
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.14 Identities = 22/22 (100%) Strand = Plus / Plus Query: 16 catgcatgagccatgcatggcg 37 |||||||||||||||||||||| Sbjct: 11226877 catgcatgagccatgcatggcg 11226898 Score = 40.1 bits (20), Expect = 2.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 94 cggcgccgccgcctcagcngcgc 116 |||||||||||||||||| |||| Sbjct: 19842247 cggcgccgccgcctcagccgcgc 19842225
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.14 Identities = 22/22 (100%) Strand = Plus / Plus Query: 16 catgcatgagccatgcatggcg 37 |||||||||||||||||||||| Sbjct: 27454660 catgcatgagccatgcatggcg 27454681
>dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0657H12 Length = 142688 Score = 44.1 bits (22), Expect = 0.14 Identities = 22/22 (100%) Strand = Plus / Plus Query: 16 catgcatgagccatgcatggcg 37 |||||||||||||||||||||| Sbjct: 46382 catgcatgagccatgcatggcg 46403
>dbj|AK120810.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014F11, full insert sequence Length = 1744 Score = 44.1 bits (22), Expect = 0.14 Identities = 22/22 (100%) Strand = Plus / Minus Query: 16 catgcatgagccatgcatggcg 37 |||||||||||||||||||||| Sbjct: 1296 catgcatgagccatgcatggcg 1275
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.14 Identities = 22/22 (100%) Strand = Plus / Plus Query: 16 catgcatgagccatgcatggcg 37 |||||||||||||||||||||| Sbjct: 11233317 catgcatgagccatgcatggcg 11233338 Score = 40.1 bits (20), Expect = 2.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 94 cggcgccgccgcctcagcngcgc 116 |||||||||||||||||| |||| Sbjct: 19853523 cggcgccgccgcctcagccgcgc 19853501
>dbj|AB028130.1| Oryza sativa mRNA for Dof zinc finger protein, complete cds Length = 1550 Score = 44.1 bits (22), Expect = 0.14 Identities = 22/22 (100%) Strand = Plus / Minus Query: 16 catgcatgagccatgcatggcg 37 |||||||||||||||||||||| Sbjct: 1424 catgcatgagccatgcatggcg 1403
>ref|NM_197431.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0096G08.18), mRNA Length = 1305 Score = 40.1 bits (20), Expect = 2.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 94 cggcgccgccgcctcagcngcgc 116 |||||||||||||||||| |||| Sbjct: 135 cggcgccgccgcctcagccgcgc 113
>gb|AC078894.11| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0096G08 map E1363S, complete sequence Length = 140681 Score = 40.1 bits (20), Expect = 2.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 94 cggcgccgccgcctcagcngcgc 116 |||||||||||||||||| |||| Sbjct: 103285 cggcgccgccgcctcagccgcgc 103263
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gggaacgtctgcgacgcggg 143 |||||||||||||||||||| Sbjct: 1902923 gggaacgtctgcgacgcggg 1902904
>gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0057E15, complete sequence Length = 149035 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 catgcatgagccatgcatgg 35 |||||||||||||||||||| Sbjct: 109795 catgcatgagccatgcatgg 109776
>gb|AC006044.2| Homo sapiens BAC clone RP11-539B24 from 7, complete sequence Length = 141509 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 ctcatgcatgagccatgcat 33 |||||||||||||||||||| Sbjct: 65253 ctcatgcatgagccatgcat 65234
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 catgcatgagccatgcatgg 35 |||||||||||||||||||| Sbjct: 16469196 catgcatgagccatgcatgg 16469177
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 cgcacgagctcttgtcggcc 173 |||||||||||||||||||| Sbjct: 23220206 cgcacgagctcttgtcggcc 23220225 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 cgcacgagctcttgtcggcc 173 |||||||||||||||||||| Sbjct: 1843717 cgcacgagctcttgtcggcc 1843698
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 catgcatgagccatgcatgg 35 |||||||||||||||||||| Sbjct: 2370834 catgcatgagccatgcatgg 2370853
>dbj|AP005250.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0009H02 Length = 155388 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 cgcacgagctcttgtcggcc 173 |||||||||||||||||||| Sbjct: 126078 cgcacgagctcttgtcggcc 126059
>dbj|AP004693.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0461F06 Length = 147891 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 cgcacgagctcttgtcggcc 173 |||||||||||||||||||| Sbjct: 143305 cgcacgagctcttgtcggcc 143324
>dbj|AP004457.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0013B04 Length = 141319 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 cgcacgagctcttgtcggcc 173 |||||||||||||||||||| Sbjct: 19557 cgcacgagctcttgtcggcc 19576
>dbj|AP005473.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0077B15 Length = 139345 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 catgcatgagccatgcatgg 35 |||||||||||||||||||| Sbjct: 73842 catgcatgagccatgcatgg 73861
>dbj|AK106233.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-B08, full insert sequence Length = 1667 Score = 40.1 bits (20), Expect = 2.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 94 cggcgccgccgcctcagcngcgc 116 |||||||||||||||||| |||| Sbjct: 312 cggcgccgccgcctcagccgcgc 290
>emb|AL442110.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0512B01, complete sequence Length = 140069 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 cgcacgagctcttgtcggcc 173 |||||||||||||||||||| Sbjct: 97072 cgcacgagctcttgtcggcc 97053 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 cgcacgagctcttgtcggcc 173 |||||||||||||||||||| Sbjct: 40532 cgcacgagctcttgtcggcc 40513
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 agctcttgtcggccttgccg 179 |||||||||||||||||||| Sbjct: 2085171 agctcttgtcggccttgccg 2085152
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 catgcatgagccatgcatgg 35 |||||||||||||||||||| Sbjct: 16560200 catgcatgagccatgcatgg 16560181
>gb|AF192912.1| Homo sapiens OC120 (OC120) mRNA, complete cds Length = 1648 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 gctgccccggcgccgccgc 105 ||||||||||||||||||| Sbjct: 193 gctgccccggcgccgccgc 175
>gb|AC119291.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0052K01, complete sequence Length = 144395 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 83685 gccccggcgccgccgcctc 83703
>ref|XM_475789.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1287 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 145 gccccggcgccgccgcctc 163
>ref|XM_450976.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1416 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 89 tgccccggcgccgccgcct 107 ||||||||||||||||||| Sbjct: 1159 tgccccggcgccgccgcct 1177
>ref|NM_183660.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2175 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 1057 gccccggcgccgccgcctc 1075
>gb|AC113271.10| Mus musculus chromosome 5, clone RP23-376H8, complete sequence Length = 185353 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 67740 gccccggcgccgccgcctc 67758
>gb|AY605898.1| Homo sapiens haplotype 1 alpha2C adrenergic receptor (ADRA2C) gene, complete cds Length = 4625 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 3534 gccccggcgccgccgcctc 3516
>gb|AC135564.4| Oryza sativa chromosome 3 BAC OSJNBb0056O10 genomic sequence, complete sequence Length = 139771 Score = 38.2 bits (19), Expect = 8.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 12 gactcatgcatgagccatgcatg 34 |||||||||||||| |||||||| Sbjct: 84136 gactcatgcatgagtcatgcatg 84114
>gb|AC136699.23| Mus musculus chromosome 9, clone RP23-18E24, complete sequence Length = 229184 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 19 gcatgagccatgcatggcg 37 ||||||||||||||||||| Sbjct: 40076 gcatgagccatgcatggcg 40058
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 8.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 12 gactcatgcatgagccatgcatg 34 |||||||||||||| |||||||| Sbjct: 21803680 gactcatgcatgagtcatgcatg 21803702
>ref|XM_898693.2| PREDICTED: Mus musculus TAO kinase 3, transcript variant 8 (Taok3), mRNA Length = 3165 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 192 gccccggcgccgccgcctc 174
>ref|XM_923686.2| PREDICTED: Mus musculus TAO kinase 3, transcript variant 16 (Taok3), mRNA Length = 3165 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 192 gccccggcgccgccgcctc 174
>gb|AY455666.1| Homo sapiens adrenergic receptor alpha 2C (ADRA2C) gene, complete cds Length = 1377 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 897 gccccggcgccgccgcctc 879
>gb|AC127331.4| Mus musculus BAC clone RP23-127A19 from 18, complete sequence Length = 179177 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 tcatgcatgagccatgcat 33 ||||||||||||||||||| Sbjct: 84888 tcatgcatgagccatgcat 84906
>ref|NM_000683.3| Homo sapiens adrenergic, alpha-2C-, receptor (ADRA2C), mRNA Length = 1958 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 935 gccccggcgccgccgcctc 917
>gb|DQ157272.1| Giardia intestinalis small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence Length = 1715 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 1604 gccccggcgccgccgcctc 1622
>emb|AL358073.24| Human DNA sequence from clone RP11-458I7 on chromosome 1 Contains the 5' end of the ZA20D1 gene for zinc finger, A20 domain containing 1, a ribosomal protein L6 (RPL6) pseudogene, the VPS45A gene for vacuolar protein sorting 45A (yeast), the gene for CK2 interacting protein 1; HQ0024c protein (CKIP-1), a novel gene and a CpG island, complete sequence Length = 188211 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 87 gctgccccggcgccgccgc 105 ||||||||||||||||||| Sbjct: 37859 gctgccccggcgccgccgc 37877
>gb|AC116320.5| Mus musculus chromosome 18 clone RP23-269B16, complete sequence Length = 195630 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 tcatgcatgagccatgcat 33 ||||||||||||||||||| Sbjct: 168257 tcatgcatgagccatgcat 168275
>emb|X57844.1|HVMNIRE H.vulgare mRNA for nitrate reductase Length = 2940 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 1561 gccccggcgccgccgcctc 1543
>dbj|AK131332.1| Homo sapiens cDNA FLJ16342 fis, clone TESTI2015626, highly similar to Human mRNA for phosphoribosypyrophosphate synthetase-associated protein 39 Length = 2214 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 92 cccggcgccgccgcctcag 110 ||||||||||||||||||| Sbjct: 263 cccggcgccgccgcctcag 245
>emb|CR621946.1| full-length cDNA clone CS0DH007YG05 of T cells (Jurkat cell line) of Homo sapiens (human) Length = 1233 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 gctgccccggcgccgccgc 105 ||||||||||||||||||| Sbjct: 64 gctgccccggcgccgccgc 46
>emb|CR620142.1| full-length cDNA clone CS0DJ014YD12 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human) Length = 1457 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 gctgccccggcgccgccgc 105 ||||||||||||||||||| Sbjct: 39 gctgccccggcgccgccgc 21
>emb|CR618253.1| full-length cDNA clone CS0DC002YK07 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1651 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 gctgccccggcgccgccgc 105 ||||||||||||||||||| Sbjct: 217 gctgccccggcgccgccgc 199
>emb|CR596096.1| full-length cDNA clone CS0DJ013YB19 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human) Length = 1464 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 gctgccccggcgccgccgc 105 ||||||||||||||||||| Sbjct: 45 gctgccccggcgccgccgc 27
>emb|CR590957.1| full-length cDNA clone CS0DI021YC24 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1600 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 1156 gccccggcgccgccgcctc 1138
>dbj|AK150617.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830012M15 product:RAB22A, member RAS oncogene family, full insert sequence Length = 1915 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 ccccggcgccgccgcctca 109 ||||||||||||||||||| Sbjct: 192 ccccggcgccgccgcctca 174
>dbj|AK146594.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:I920030H09 product:RAB22A, member RAS oncogene family, full insert sequence Length = 1909 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 ccccggcgccgccgcctca 109 ||||||||||||||||||| Sbjct: 186 ccccggcgccgccgcctca 168
>dbj|AK149200.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120492L12 product:RAB22A, member RAS oncogene family, full insert sequence Length = 3307 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 ccccggcgccgccgcctca 109 ||||||||||||||||||| Sbjct: 178 ccccggcgccgccgcctca 160
>dbj|AK147619.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN full-length enriched library, clone:M5C1093C21 product:RAB22A, member RAS oncogene family, full insert sequence Length = 7048 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 ccccggcgccgccgcctca 109 ||||||||||||||||||| Sbjct: 272 ccccggcgccgccgcctca 254
>dbj|AK040531.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430105I05 product:STE20-like kinase homolog (Fragment), full insert sequence Length = 1361 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 193 gccccggcgccgccgcctc 175
>gb|AC154357.2| Mus musculus BAC clone RP23-192E11 from chromosome 9, complete sequence Length = 195151 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 19 gcatgagccatgcatggcg 37 ||||||||||||||||||| Sbjct: 188734 gcatgagccatgcatggcg 188716
>gb|U09492.1|GLU09492 Giardia lamblia CM 5.8S ribosomal RNA and 16S ribosomal RNA genes, complete sequence, and 23S ribosomal RNA gene, partial sequence Length = 3830 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 3793 gccccggcgccgccgcctc 3811
>gb|U09491.1|GLU09491 Giardia lamblia AMC-4 5.8S ribosomal RNA and 16S ribosomal RNA genes, complete sequence Length = 2354 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 2317 gccccggcgccgccgcctc 2335
>gb|AF217956.1|AF217956 Homo sapiens CK2-interacting protein-1 mRNA, complete cds Length = 1441 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 gctgccccggcgccgccgc 105 ||||||||||||||||||| Sbjct: 44 gctgccccggcgccgccgc 26
>dbj|AK031667.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length enriched library, clone:6030478G15 product:RAB22A PROTEIN (SIMILAR TO RIKEN CDNA 3732413A17 GENE), full insert sequence Length = 1679 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 ccccggcgccgccgcctca 109 ||||||||||||||||||| Sbjct: 166 ccccggcgccgccgcctca 148
>dbj|AK021398.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130120E14 product:unclassifiable, full insert sequence Length = 834 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 ccccggcgccgccgcctca 109 ||||||||||||||||||| Sbjct: 183 ccccggcgccgccgcctca 165
>dbj|AK014407.1| Mus musculus 12 days embryo embryonic body below diaphragm region cDNA, RIKEN full-length enriched library, clone:3732413A17 product:RAB22A PROTEIN (SIMILAR TO RIKEN CDNA 3732413A17 GENE) homolog [Mus musculus], full insert sequence Length = 4385 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 ccccggcgccgccgcctca 109 ||||||||||||||||||| Sbjct: 172 ccccggcgccgccgcctca 154
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 89 tgccccggcgccgccgcct 107 ||||||||||||||||||| Sbjct: 17878343 tgccccggcgccgccgcct 17878325
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 26570210 gccccggcgccgccgcctc 26570228
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 8.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 12 gactcatgcatgagccatgcatg 34 |||||||||||||| |||||||| Sbjct: 21796709 gactcatgcatgagtcatgcatg 21796731
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 10898282 gccccggcgccgccgcctc 10898264
>gb|AC141928.2| Homo sapiens fosmid clone XXFOS-85085A9 from 4, complete sequence Length = 40040 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 13550 gccccggcgccgccgcctc 13532
>gb|AF280400.1|AF280400 Homo sapiens alpha 2C adrenergic receptor variant (ADRA2C) gene, complete cds Length = 1377 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 897 gccccggcgccgccgcctc 879
>gb|AF280399.1|AF280399 Homo sapiens alpha 2C adrenergic receptor (ADRA2C) gene, complete cds Length = 1389 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 897 gccccggcgccgccgcctc 879
>dbj|AP003140.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0025P13 Length = 133242 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 85298 gccccggcgccgccgcctc 85280
>dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0487H02 Length = 145491 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 1124 gccccggcgccgccgcctc 1106
>gb|AF239841.1|AF239841 Giardia intestinalis strain calf type 2 16S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 384 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 305 gccccggcgccgccgcctc 323
>gb|AF239840.1|AF239840 Giardia intestinalis strain calf type 1 16S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 384 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 305 gccccggcgccgccgcctc 323
>dbj|AP005555.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1118_B06 Length = 106678 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 89 tgccccggcgccgccgcct 107 ||||||||||||||||||| Sbjct: 29162 tgccccggcgccgccgcct 29144
>dbj|AK069281.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011F14, full insert sequence Length = 1415 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 89 tgccccggcgccgccgcct 107 ||||||||||||||||||| Sbjct: 1158 tgccccggcgccgccgcct 1176
>gb|BC006596.1| Mus musculus RAB22A, member RAS oncogene family, mRNA (cDNA clone MGC:11709 IMAGE:3965264), complete cds Length = 1911 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 ccccggcgccgccgcctca 109 ||||||||||||||||||| Sbjct: 173 ccccggcgccgccgcctca 155
>tpe|BN000651.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx122 gene for class III peroxidase 122 precursor, exons 1-3 Length = 2745 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 89 tgccccggcgccgccgcct 107 ||||||||||||||||||| Sbjct: 2673 tgccccggcgccgccgcct 2691
>gb|AF068845.1|AF068845 Mycobacteriophage TM4, complete genome Length = 52797 Score = 38.2 bits (19), Expect = 8.8 Identities = 27/30 (90%) Strand = Plus / Plus Query: 90 gccccggcgccgccgcctcagcngcgcatc 119 ||||||||||||||||| | || ||||||| Sbjct: 25212 gccccggcgccgccgccgcggcagcgcatc 25241
>emb|X52949.1|GIRRNATR Giardia intestinalis DNA for rRNA tandem repeat unit Length = 5566 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 968 gccccggcgccgccgcctc 986
>ref|NM_024436.1| Mus musculus RAB22A, member RAS oncogene family (Rab22a), mRNA Length = 4385 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 ccccggcgccgccgcctca 109 ||||||||||||||||||| Sbjct: 172 ccccggcgccgccgcctca 154
>emb|AL845503.5| Mouse DNA sequence from clone RP23-292G16 on chromosome 2, complete sequence Length = 148491 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 ccccggcgccgccgcctca 109 ||||||||||||||||||| Sbjct: 65324 ccccggcgccgccgcctca 65306
>emb|X05396.1|GLRRN58S Giardia lamblia rDNA for 5.8S rRNA and part of LSRNA and SSRNA Length = 651 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 493 gccccggcgccgccgcctc 511
>gb|AC090699.10| Homo sapiens chromosome 17, clone RP11-794C22, complete sequence Length = 138379 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 92 cccggcgccgccgcctcag 110 ||||||||||||||||||| Sbjct: 65914 cccggcgccgccgcctcag 65932
>gb|M35013.1|GIARGBA G.lamblia 5.8S rRNA gene Length = 763 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 293 gccccggcgccgccgcctc 311
>dbj|D13538.1|HUMA2CIIA Human alpha2CII-adrenergic receptor gene, complete cds Length = 1382 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 90 gccccggcgccgccgcctc 108 ||||||||||||||||||| Sbjct: 899 gccccggcgccgccgcctc 881 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 867,529 Number of Sequences: 3902068 Number of extensions: 867529 Number of successful extensions: 71085 Number of sequences better than 10.0: 84 Number of HSP's better than 10.0 without gapping: 87 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69394 Number of HSP's gapped (non-prelim): 1691 length of query: 179 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 157 effective length of database: 17,147,199,772 effective search space: 2692110364204 effective search space used: 2692110364204 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)