ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd17j04 |
|---|---|
| Clone Library Name | barley_pub |
>SGAT_ARATH (Q56YA5) Serine--glyoxylate aminotransferase (EC 2.6.1.45)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Serine--pyruvate aminotransferase) (EC 2.6.1.51) Length = 401 Score = 229 bits (585), Expect = 4e-60 Identities = 112/153 (73%), Positives = 128/153 (83%) Frame = -3 Query: 645 YTPSIQXXXXXXXXXXXLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTV 466 YTPSIQ +FEEGL+N+I RH RLG ATRLAV AWGLKNCT+KEE S+TV Sbjct: 249 YTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQKEEWISNTV 308 Query: 465 TAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEM 286 TAV+VPP+ID SEIV+ AW+RYNLSLGLGLNKVAGKVFRIGHLG++NELQLLGCL GVEM Sbjct: 309 TAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGCLAGVEM 368 Query: 285 VLKDIGYPVKLGSGVAAAAAYLSNSTPLIPSRI 187 +LKD+GYPV +GSGVAAA+ YL + PLIPSRI Sbjct: 369 ILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI 401
>SGAA_METEX (P55819) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 379 Score = 158 bits (399), Expect = 2e-38 Identities = 82/142 (57%), Positives = 100/142 (70%) Frame = -3 Query: 645 YTPSIQXXXXXXXXXXXLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTV 466 YTP + LFEEGL+NV RH LG ATR AVAAWGLK C + E SDTV Sbjct: 230 YTPPLPLLYGLREALACLFEEGLENVYHRHAVLGEATRQAVAAWGLKTCAKSPEWNSDTV 289 Query: 465 TAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEM 286 TA++ P +D+++I+KHA+ RYNL+LG GL++VAGKVFRIGH+G LNEL LLG + G EM Sbjct: 290 TAILAPEGVDAAKIIKHAYVRYNLALGAGLSQVAGKVFRIGHVGDLNELSLLGAIAGAEM 349 Query: 285 VLKDIGYPVKLGSGVAAAAAYL 220 L D G V GSGVAAA++YL Sbjct: 350 SLIDNGVKVTPGSGVAAASSYL 371
>SGAA_HYPME (O08374) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 404 Score = 153 bits (386), Expect = 5e-37 Identities = 81/145 (55%), Positives = 97/145 (66%) Frame = -3 Query: 645 YTPSIQXXXXXXXXXXXLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTV 466 YTP+ Q LF EGLDNV RHTRL + R AV AWGLK C ++ + +SDTV Sbjct: 244 YTPATQLLRGLRTSLDLLFAEGLDNVFARHTRLASGVRAAVDAWGLKLCAKEPKWYSDTV 303 Query: 465 TAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEM 286 +A++VP IDS+ I K A+ RYN S GLGLNKVAGKVFRIGHLG L+E+ + G L EM Sbjct: 304 SAILVPEGIDSNAITKTAYYRYNTSFGLGLNKVAGKVFRIGHLGMLDEVMIGGALFAAEM 363 Query: 285 VLKDIGYPVKLGSGVAAAAAYLSNS 211 LKD G +KLGSG AAA Y S + Sbjct: 364 ALKDNGVNLKLGSGTGAAAEYFSKN 388
>Y959_METJA (Q58369) Putative aminotransferase MJ0959 (EC 2.6.1.-)| Length = 385 Score = 89.0 bits (219), Expect = 1e-17 Identities = 54/142 (38%), Positives = 77/142 (54%) Frame = -3 Query: 645 YTPSIQXXXXXXXXXXXLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTV 466 YTPS+ + EEG++N +KRH RL ATR + A G++ KE S TV Sbjct: 243 YTPSVNLTYALNVALDLVLEEGIENRVKRHERLAKATRAGLEAMGIE-LFAKERARSVTV 301 Query: 465 TAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEM 286 T+ P I+ S+ +YN+ + G +AGK+FRIGH+G E ++L L VE+ Sbjct: 302 TSAKYPEGIEDSKFRGILSNKYNIVVAGGQKHLAGKIFRIGHMGICGEKEVLATLACVEL 361 Query: 285 VLKDIGYPVKLGSGVAAAAAYL 220 LK++G+ VK SGV A L Sbjct: 362 ALKELGFEVK-ESGVEVAKEVL 382
>DHSS_ANACY (P16421) Soluble hydrogenase 42 kDa subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 383 Score = 79.3 bits (194), Expect = 9e-15 Identities = 47/145 (32%), Positives = 81/145 (55%), Gaps = 1/145 (0%) Frame = -3 Query: 645 YTPSIQXXXXXXXXXXXLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTV 466 +TP + + +EGL+++ RH R ATR A+ A L +E S + Sbjct: 241 FTPPVNLMVALHTTLGMMKKEGLESIFTRHERQKNATRAAMKALNLP-LFAADECASPAI 299 Query: 465 TAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEM 286 TAV P +++ +I KR++++L G + ++ K+FR+GHLG +++ +L C+ +E+ Sbjct: 300 TAVATPG-MEADKIRSLMKKRFDIALAGGQDHLSNKIFRVGHLGFVSDRDILSCIASLEV 358 Query: 285 VLKDIGYP-VKLGSGVAAAAAYLSN 214 VL ++G+ G+GVAAAA SN Sbjct: 359 VLLELGHENFNSGAGVAAAARVFSN 383
>DHSS_SYNP1 (P14776) Soluble hydrogenase, small subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 384 Score = 72.8 bits (177), Expect = 8e-13 Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 1/146 (0%) Frame = -3 Query: 645 YTPSIQXXXXXXXXXXXLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTV 466 +TP + + EGL+ + +RH RL ATR A+ A L + S + Sbjct: 241 FTPPVNLFFALKTALEMMQAEGLEAIFQRHQRLMQATRAAMKALNLP-LYAADSCASPAI 299 Query: 465 TAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEM 286 TAV P +++ I KR++++L G + + G++FRIGHLG + + +L + +E Sbjct: 300 TAVA-PQGVEAENIRSLMKKRFDIALAGGQDHLKGQIFRIGHLGFVGDRDILAAVSALEA 358 Query: 285 VLKDIGYP-VKLGSGVAAAAAYLSNS 211 VL ++GY G+GVAAA+ LS + Sbjct: 359 VLAELGYTNFTPGAGVAAASRVLSTA 384
>PUCG_BACSU (O32148) Purine catabolism protein pucG (EC 2.-.-.-)| Length = 416 Score = 45.4 bits (106), Expect = 1e-04 Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 1/127 (0%) Frame = -3 Query: 588 EEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAW 409 EEGL+ +RH A + A GL+ + VT V +P ID + Sbjct: 285 EEGLETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMP-VVTCVEIPGGIDGESVRDMLL 343 Query: 408 KRYNLSLGLGLNKVAGKVFRIGHLGH-LNELQLLGCLGGVEMVLKDIGYPVKLGSGVAAA 232 ++ + + +AGK++RIG +G+ + +L L G+E VL ++ G + AA Sbjct: 344 AQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHNAGIEAGKALQAA 403 Query: 231 AAYLSNS 211 N+ Sbjct: 404 LDVYENA 410
>SPYA_RAT (P09139) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 44.7 bits (104), Expect = 2e-04 Identities = 27/86 (31%), Positives = 40/86 (46%) Frame = -3 Query: 588 EEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAW 409 E+GL+N +RH + GLK + E T+T V VP + +IV + Sbjct: 303 EQGLENSWRRHREATAHLHKCLRELGLKFFVKDPEIRLPTITTVTVPAGYNWRDIVSYVL 362 Query: 408 KRYNLSLGLGLNKVAGKVFRIGHLGH 331 +N+ + GL KV RIG LG+ Sbjct: 363 DHFNIEISGGLGPSEDKVLRIGLLGY 388
>SPYA_CALJA (P31029) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 44.3 bits (103), Expect = 3e-04 Identities = 27/85 (31%), Positives = 41/85 (48%) Frame = -3 Query: 588 EEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAW 409 E+GL+N ++H + A GL+ + TVT V VP D +IV + Sbjct: 303 EQGLENSWRKHREAAAYLHGRLQALGLRLFVKDPALRLPTVTTVAVPTGYDWRDIVSYLI 362 Query: 408 KRYNLSLGLGLNKVAGKVFRIGHLG 334 +R+ + + GL GKV RIG +G Sbjct: 363 ERFGIEITGGLGPSTGKVLRIGLMG 387
>SPYA_HUMAN (P21549) Serine--pyruvate aminotransferase (EC 2.6.1.51) (SPT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 392 Score = 42.0 bits (97), Expect = 0.002 Identities = 27/85 (31%), Positives = 40/85 (47%) Frame = -3 Query: 588 EEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAW 409 E+GL+N ++H + A GL+ + TVT V VP D +IV + Sbjct: 281 EQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGYDWRDIVSYVI 340 Query: 408 KRYNLSLGLGLNKVAGKVFRIGHLG 334 +++ + GL GKV RIG LG Sbjct: 341 DHFDIEIMGGLGPSTGKVLRIGLLG 365
>SPYA_FELCA (P41689) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 41.2 bits (95), Expect = 0.003 Identities = 26/85 (30%), Positives = 40/85 (47%) Frame = -3 Query: 588 EEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAW 409 E+GL+N ++H + + GL+ + TVT V VP D +IV + Sbjct: 303 EQGLENSWRQHREVTAYLHGRLQGLGLQLFVKDPALRLPTVTTVAVPAGYDWRDIVNYVM 362 Query: 408 KRYNLSLGLGLNKVAGKVFRIGHLG 334 +++ + GL GKV RIG LG Sbjct: 363 DHFDIEITGGLGPSMGKVLRIGLLG 387
>SGAT_MAIZE (P84187) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Fragments) Length = 136 Score = 40.0 bits (92), Expect = 0.006 Identities = 28/62 (45%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = -3 Query: 429 EIVKHAW---KRYNLSLGLGLNKVA-GKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYP 262 E+ AW RYNLSLGLGLNKVA GKVFR D+GYP Sbjct: 99 ELAVEAWGLSNRYNLSLGLGLNKVAGGKVFR------------------------DVGYP 134 Query: 261 VK 256 VK Sbjct: 135 VK 136
>SPYA_RABIT (P31030) Serine--pyruvate aminotransferase (EC 2.6.1.51) (SPT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 392 Score = 37.4 bits (85), Expect = 0.039 Identities = 25/85 (29%), Positives = 38/85 (44%) Frame = -3 Query: 588 EEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAW 409 E+GL+ +RH + + GL+ + TVT V+VP +IV + Sbjct: 281 EQGLEKSWQRHREVAQHLYRRLQELGLQLFVKDPALRLPTVTTVIVPASYRWRDIVSYVM 340 Query: 408 KRYNLSLGLGLNKVAGKVFRIGHLG 334 + + + GL A KV RIG LG Sbjct: 341 HHFGIEITGGLGPSADKVLRIGLLG 365
>SPYA_MOUSE (O35423) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 413 Score = 35.8 bits (81), Expect = 0.11 Identities = 24/86 (27%), Positives = 38/86 (44%) Frame = -3 Query: 588 EEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAW 409 E GL+N +RH + GLK + E T+T V Y + +IV + Sbjct: 303 ERGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTAAGY-NWRDIVSYVL 361 Query: 408 KRYNLSLGLGLNKVAGKVFRIGHLGH 331 +++ + GL +V RIG LG+ Sbjct: 362 DHFSIEISGGLGPTEERVLRIGLLGY 387
>LAS17_YEAST (Q12446) Proline-rich protein LAS17| Length = 633 Score = 32.7 bits (73), Expect = 0.95 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Frame = +3 Query: 213 NSRGTPPRPPRRCQAS-PGTRCP*APSPPRRG 305 N+R PP PP R G R P P PPRRG Sbjct: 320 NNRPVPPPPPMRTTTEGSGVRLPAPPPPPRRG 351
>CEFD_NOCLA (Q03046) Isopenicillin N epimerase (EC 5.1.1.17)| Length = 398 Score = 32.7 bits (73), Expect = 0.95 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Frame = -3 Query: 591 FEEGLDN--VIKRHTRLGTATRLAVAAW-GLKNCTEKEENFSDTVTAVVVPPYIDSSEIV 421 F+ GL + V +R L TR ++ W GL+ T S +TA +PP D++ + Sbjct: 292 FQAGLGHGRVRERMRELAAFTRERLSGWRGLEPVTPAHPGLSGAMTAFRLPPGTDTAGLR 351 Query: 420 KHAWKRYNLSLGLGLNKVAGKVFRI 346 W R+ + + + L++ G + R+ Sbjct: 352 HGLWDRFRIDVPV-LDRPDGPLLRV 375
>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC| 3.4.22.-) (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 31.6 bits (70), Expect = 2.1 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +3 Query: 213 NSRGTPPRPPRRCQASPGTRCP*APSPPRRGNP 311 ++RGTPP P R P P P+PPR G+P Sbjct: 740 DARGTPPPAPAR---DPPPPAPSPPAPPRAGDP 769
>F100A_RAT (Q6AXN0) Protein FAM100A| Length = 176 Score = 31.6 bits (70), Expect = 2.1 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = +2 Query: 215 FERYAAAAATPLPSFTGYPMSLSTISTPPRQPRSCSSLRWPRWP 346 F R A+ + +G PM+ S S PP P + S P WP Sbjct: 81 FSRLKASESFHSGGSSGSPMATSATSPPPHFPHATGSFATPSWP 124
>YGHE_ECOLI (Q46833) Putative general secretion pathway protein L-type yghE| Length = 286 Score = 29.6 bits (65), Expect = 8.0 Identities = 17/53 (32%), Positives = 22/53 (41%) Frame = +2 Query: 191 LEGMRGVEFERYAAAAATPLPSFTGYPMSLSTISTPPRQPRSCSSLRWPRWPI 349 L G + ER A LP+ T Y + T P QPR +W RW + Sbjct: 87 LSAWAGADAERLTVTA---LPAITTYGEPEGNLLTGPWQPRVSYRKQWARWRV 136 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,684,129 Number of Sequences: 219361 Number of extensions: 1490853 Number of successful extensions: 6055 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5384 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6028 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
