ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17j02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATG13_YEAST (Q06628) Autophagy-related protein 13 28 1.1
2APBE_TREPA (O83774) Thiamine biosynthesis lipoprotein apbE precu... 30 2.4
3THBI_RHOPR (Q06684) Thrombin inhibitor rhodniin 29 4.0
4AGOG_PYRKO (Q5JI79) N-glycosylase/DNA lyase (AGOG) (8-oxoguanine... 28 6.9
5ANDR_CROCR (Q8MIK0) Androgen receptor (Dihydrotestosterone recep... 28 9.0

>ATG13_YEAST (Q06628) Autophagy-related protein 13|
          Length = 738

 Score = 28.1 bits (61), Expect(2) = 1.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 304 SNSAFLNEPPQEERPGKAHTYTPQFHV 224
           SNS+F N+PP   RP  +  Y PQ ++
Sbjct: 390 SNSSFFNQPP-VHRPSMSSNYGPQMNI 415



 Score = 21.6 bits (44), Expect(2) = 1.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 425 PFGSPGRPIEKSPLGSSPKSRSPA 354
           P   P +P +   +GS   SR+P+
Sbjct: 367 PISRPVQPFKVGSIGSQSASRNPS 390



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>APBE_TREPA (O83774) Thiamine biosynthesis lipoprotein apbE precursor|
          Length = 362

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 228 WNCGV*VCALPGLSSCGGSLRKAE 299
           W  GV VC L G+ SCGG  R  E
Sbjct: 8   WRIGVLVCILCGVGSCGGRARVRE 31



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>THBI_RHOPR (Q06684) Thrombin inhibitor rhodniin|
          Length = 103

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 153 PYCLHRVDVSCESFARKYTPPCNLNC 76
           P+ LHRV   C S    Y+ PC LNC
Sbjct: 9   PHALHRV---CGSDGETYSNPCTLNC 31



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>AGOG_PYRKO (Q5JI79) N-glycosylase/DNA lyase (AGOG) (8-oxoguanine DNA|
           glycosylase) (EC 3.2.2.-) (DNA-(apurinic or apyrimidinic
           site) lyase) (EC 4.2.99.18) (AP lyase)
          Length = 263

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 334 AGKGRDWWTRSNSAFLNEPPQE 269
           +GKG DWW   +  F   PP++
Sbjct: 75  SGKGEDWWWEFSKYFSQNPPEK 96



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>ANDR_CROCR (Q8MIK0) Androgen receptor (Dihydrotestosterone receptor)|
          Length = 912

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 147 CLHRVDVSCESFARKYTPPCNLNCC 73
           C  R D + + F RK  PPC L  C
Sbjct: 588 CASRNDCTIDKFRRKNCPPCRLRKC 612


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,031,320
Number of Sequences: 219361
Number of extensions: 1007341
Number of successful extensions: 2755
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2754
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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