ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17j02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_470153.1| Oryza sativa (japonica cultivar-group), mRNA 109 7e-21
2dbj|AK119789.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 7e-21
3dbj|AK065702.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 7e-21
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 101 2e-18
5gb|AC096687.5| Oryza sativa chromosome 3 BAC OSJNBa0010E04 genom... 101 2e-18
6gb|AC091247.4| Oryza sativa chromosome 3 BAC OJ1111_B11 genomic ... 101 2e-18
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
8gb|AY177888.1| Sorghum bicolor clone BAC IS_91D5 ABA-induced gen... 70 6e-09
9gb|AC073917.19| Homo sapiens 12q BAC RP11-415D21 (Roswell Park C... 44 0.37
10gb|AC073532.18|AC073532 Homo sapiens 12 BAC RP11-150F20 (Roswell... 44 0.37
11dbj|AB154359.1| Aspergillus awamori xyl mRNA for beta-xylosidase... 42 1.4
12gb|AF108944.1|AF108944 Aspergillus niger beta-xylosidase (XLND) ... 42 1.4
13emb|Z84377.1|ANZ84377 Aspergillus niger xlnD gene 42 1.4
14ref|XM_516945.1| PREDICTED: Pan troglodytes similar to transform... 40 5.7
15ref|NM_003722.3| Homo sapiens tumor protein p73-like (TP73L), mRNA 40 5.7
16gb|AY341142.1|AY339663S3 Homo sapiens P63 protein gene, exon 4, ... 40 5.7
17emb|Y16961.1|HSA16961 Homo sapiens mRNA for KET protein 40 5.7
18gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 5.7
19gb|AF124531.1|HSP63G04 Homo sapiens P63 protein (P63) gene, exon 4 40 5.7
20gb|AC063939.15| Homo sapiens 3 BAC RP11-373I6 (Roswell Park Canc... 40 5.7
21gb|AF091627.1|AF091627 Homo sapiens CUSP mRNA, complete cds 40 5.7
22gb|AF116771.1|AF116771 Homo sapiens p51 delta mRNA, complete cds 40 5.7
23gb|AF116759.1|F116756S04 Homo sapiens p51 gene, exon 4 40 5.7
24gb|BC039815.1| Homo sapiens tumor protein p73-like, mRNA (cDNA c... 40 5.7
25gb|AF075433.1|AF075433 Homo sapiens DN p63 beta mRNA, complete cds 40 5.7
26gb|AF075432.1|AF075432 Homo sapiens TA p63 beta mRNA, complete cds 40 5.7
27gb|AF075431.1|AF075431 Homo sapiens DN p63 alpha mRNA, complete cds 40 5.7
28gb|AF075430.1|AF075430 Homo sapiens TA p63 alpha mRNA, complete cds 40 5.7
29gb|AF075429.1|AF075429 Homo sapiens DN p63 gamma mRNA, complete cds 40 5.7
30gb|AF075428.1|AF075428 Homo sapiens TA p63 gamma mRNA, complete cds 40 5.7
31gb|AF061512.1|AF061512 Homo sapiens p53 homolog (p40) mRNA, comp... 40 5.7
32dbj|AB016073.1| Homo sapiens mRNA for p51B, complete cds 40 5.7
33dbj|AB016072.1| Homo sapiens mRNA for p51A, complete cds 40 5.7
34dbj|AB010153.1| Homo sapiens mRNA for p73H, complete cds 40 5.7

>ref|XM_470153.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 950

 Score =  109 bits (55), Expect = 7e-21
 Identities = 88/99 (88%)
 Strand = Plus / Minus

                                                                       
Query: 221 ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 280
           |||||||||||||||||||| |||| | ||||||||||| |   |||| |||||||||||
Sbjct: 572 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 513

                                                  
Query: 281 ctcgttgaggaaggccgagttgctcctcgtccaccagtc 319
           |||||| ||||| ||| ||||||||||||||||||||||
Sbjct: 512 ctcgttcaggaacgcccagttgctcctcgtccaccagtc 474



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>dbj|AK119789.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-G12, full
           insert sequence
          Length = 972

 Score =  109 bits (55), Expect = 7e-21
 Identities = 88/99 (88%)
 Strand = Plus / Minus

                                                                       
Query: 221 ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 280
           |||||||||||||||||||| |||| | ||||||||||| |   |||| |||||||||||
Sbjct: 605 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 546

                                                  
Query: 281 ctcgttgaggaaggccgagttgctcctcgtccaccagtc 319
           |||||| ||||| ||| ||||||||||||||||||||||
Sbjct: 545 ctcgttcaggaacgcccagttgctcctcgtccaccagtc 507



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>dbj|AK065702.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035P06, full
           insert sequence
          Length = 974

 Score =  109 bits (55), Expect = 7e-21
 Identities = 88/99 (88%)
 Strand = Plus / Minus

                                                                       
Query: 221 ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 280
           |||||||||||||||||||| |||| | ||||||||||| |   |||| |||||||||||
Sbjct: 596 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 537

                                                  
Query: 281 ctcgttgaggaaggccgagttgctcctcgtccaccagtc 319
           |||||| ||||| ||| ||||||||||||||||||||||
Sbjct: 536 ctcgttcaggaacgcccagttgctcctcgtccaccagtc 498



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  101 bits (51), Expect = 2e-18
 Identities = 84/95 (88%)
 Strand = Plus / Plus

                                                                            
Query: 221      ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 280
                |||||||||||||||||||| |||| | ||||||||||| |   |||| |||||||||||
Sbjct: 34429971 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 34430030

                                                   
Query: 281      ctcgttgaggaaggccgagttgctcctcgtccacc 315
                |||||| ||||| ||| ||||||||||||||||||
Sbjct: 34430031 ctcgttcaggaacgcccagttgctcctcgtccacc 34430065



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>gb|AC096687.5| Oryza sativa chromosome 3 BAC OSJNBa0010E04 genomic sequence, complete
             sequence
          Length = 117505

 Score =  101 bits (51), Expect = 2e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                         
Query: 221   ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 280
             |||||||||||||||||||| |||| | ||||||||||| |   |||| |||||||||||
Sbjct: 96196 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 96137

                                                
Query: 281   ctcgttgaggaaggccgagttgctcctcgtccacc 315
             |||||| ||||| ||| ||||||||||||||||||
Sbjct: 96136 ctcgttcaggaacgcccagttgctcctcgtccacc 96102



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>gb|AC091247.4| Oryza sativa chromosome 3 BAC OJ1111_B11 genomic sequence, complete
             sequence
          Length = 115393

 Score =  101 bits (51), Expect = 2e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                         
Query: 221   ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 280
             |||||||||||||||||||| |||| | ||||||||||| |   |||| |||||||||||
Sbjct: 19723 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 19664

                                                
Query: 281   ctcgttgaggaaggccgagttgctcctcgtccacc 315
             |||||| ||||| ||| ||||||||||||||||||
Sbjct: 19663 ctcgttcaggaacgcccagttgctcctcgtccacc 19629



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  101 bits (51), Expect = 2e-18
 Identities = 84/95 (88%)
 Strand = Plus / Plus

                                                                            
Query: 221      ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 280
                |||||||||||||||||||| |||| | ||||||||||| |   |||| |||||||||||
Sbjct: 34520443 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 34520502

                                                   
Query: 281      ctcgttgaggaaggccgagttgctcctcgtccacc 315
                |||||| ||||| ||| ||||||||||||||||||
Sbjct: 34520503 ctcgttcaggaacgcccagttgctcctcgtccacc 34520537



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>gb|AY177888.1| Sorghum bicolor clone BAC IS_91D5 ABA-induced gene, partial sequence
          Length = 3214

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                   
Query: 270  tcctgcggcggctcgttgaggaaggccgagttgctcctcgtccaccagtcccggc 324
            ||||||||||||||||||||||| ||| || |||||| |||||||||||| ||||
Sbjct: 1798 tcctgcggcggctcgttgaggaacgcccagctgctccgcgtccaccagtcgcggc 1744



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 222  gcgacgtggaactgcggcgtgtag 245
            ||||||||||||||||||||||||
Sbjct: 1849 gcgacgtggaactgcggcgtgtag 1826



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>gb|AC073917.19| Homo sapiens 12q BAC RP11-415D21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 163836

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 285   ttgaggaaggccgagttgctcc 306
             ||||||||||||||||||||||
Sbjct: 75922 ttgaggaaggccgagttgctcc 75901



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>gb|AC073532.18|AC073532 Homo sapiens 12 BAC RP11-150F20 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 143759

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 285   ttgaggaaggccgagttgctcc 306
             ||||||||||||||||||||||
Sbjct: 58926 ttgaggaaggccgagttgctcc 58905



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>dbj|AB154359.1| Aspergillus awamori xyl mRNA for beta-xylosidase, complete cds
          Length = 3460

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 209  ggcgttgccggcggcgacgtggaactgcggcgtgtag 245
            ||||| || ||||||||||||||| || |||||||||
Sbjct: 1403 ggcgtcgcgggcggcgacgtggaattggggcgtgtag 1367



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>gb|AF108944.1|AF108944 Aspergillus niger beta-xylosidase (XLND) mRNA, complete cds
          Length = 2508

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 209 ggcgttgccggcggcgacgtggaactgcggcgtgtag 245
           ||||| || |||||||||||||||||| || ||||||
Sbjct: 827 ggcgtcgcgggcggcgacgtggaactggggagtgtag 791



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>emb|Z84377.1|ANZ84377 Aspergillus niger xlnD gene
          Length = 4560

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 209  ggcgttgccggcggcgacgtggaactgcggcgtgtag 245
            ||||| || ||||||||||||||| || |||||||||
Sbjct: 2122 ggcgtcgcgggcggcgacgtggaattggggcgtgtag 2086



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>ref|XM_516945.1| PREDICTED: Pan troglodytes similar to transformation related
           protein 63; tumor protein p63; KET protein (LOC460929),
           mRNA
          Length = 399

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 gctcctcgtccaccagtccc 321
           ||||||||||||||||||||
Sbjct: 158 gctcctcgtccaccagtccc 177



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>ref|NM_003722.3| Homo sapiens tumor protein p73-like (TP73L), mRNA
          Length = 4932

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 gctcctcgtccaccagtccc 321
           ||||||||||||||||||||
Sbjct: 469 gctcctcgtccaccagtccc 488



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>gb|AY341142.1|AY339663S3 Homo sapiens P63 protein gene, exon 4, alternatively spliced
          Length = 479

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 gctcctcgtccaccagtccc 321
           ||||||||||||||||||||
Sbjct: 156 gctcctcgtccaccagtccc 175



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>emb|Y16961.1|HSA16961 Homo sapiens mRNA for KET protein
          Length = 4849

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 gctcctcgtccaccagtccc 321
           ||||||||||||||||||||
Sbjct: 407 gctcctcgtccaccagtccc 426



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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 217    cggcggcgacgtggaactgc 236
              ||||||||||||||||||||
Sbjct: 459740 cggcggcgacgtggaactgc 459759



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>gb|AF124531.1|HSP63G04 Homo sapiens P63 protein (P63) gene, exon 4
          Length = 1193

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 gctcctcgtccaccagtccc 321
           ||||||||||||||||||||
Sbjct: 805 gctcctcgtccaccagtccc 824



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>gb|AC063939.15| Homo sapiens 3 BAC RP11-373I6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 180055

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   gctcctcgtccaccagtccc 321
             ||||||||||||||||||||
Sbjct: 28749 gctcctcgtccaccagtccc 28768



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>gb|AF091627.1|AF091627 Homo sapiens CUSP mRNA, complete cds
          Length = 4756

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 gctcctcgtccaccagtccc 321
           ||||||||||||||||||||
Sbjct: 223 gctcctcgtccaccagtccc 242



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>gb|AF116771.1|AF116771 Homo sapiens p51 delta mRNA, complete cds
          Length = 2031

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 gctcctcgtccaccagtccc 321
           ||||||||||||||||||||
Sbjct: 407 gctcctcgtccaccagtccc 426



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>gb|AF116759.1|F116756S04 Homo sapiens p51 gene, exon 4
          Length = 508

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 gctcctcgtccaccagtccc 321
           ||||||||||||||||||||
Sbjct: 188 gctcctcgtccaccagtccc 207



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>gb|BC039815.1| Homo sapiens tumor protein p73-like, mRNA (cDNA clone MGC:48678
           IMAGE:5552611), complete cds
          Length = 4932

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 gctcctcgtccaccagtccc 321
           ||||||||||||||||||||
Sbjct: 469 gctcctcgtccaccagtccc 488



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>gb|AF075433.1|AF075433 Homo sapiens DN p63 beta mRNA, complete cds
          Length = 1386

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 gctcctcgtccaccagtccc 321
           ||||||||||||||||||||
Sbjct: 98  gctcctcgtccaccagtccc 117



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>gb|AF075432.1|AF075432 Homo sapiens TA p63 beta mRNA, complete cds
          Length = 1551

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 gctcctcgtccaccagtccc 321
           ||||||||||||||||||||
Sbjct: 263 gctcctcgtccaccagtccc 282



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>gb|AF075431.1|AF075431 Homo sapiens DN p63 alpha mRNA, complete cds
          Length = 1761

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 gctcctcgtccaccagtccc 321
           ||||||||||||||||||||
Sbjct: 98  gctcctcgtccaccagtccc 117



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>gb|AF075430.1|AF075430 Homo sapiens TA p63 alpha mRNA, complete cds
          Length = 1926

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 gctcctcgtccaccagtccc 321
           ||||||||||||||||||||
Sbjct: 263 gctcctcgtccaccagtccc 282



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>gb|AF075429.1|AF075429 Homo sapiens DN p63 gamma mRNA, complete cds
          Length = 1182

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 gctcctcgtccaccagtccc 321
           ||||||||||||||||||||
Sbjct: 98  gctcctcgtccaccagtccc 117



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>gb|AF075428.1|AF075428 Homo sapiens TA p63 gamma mRNA, complete cds
          Length = 1347

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 gctcctcgtccaccagtccc 321
           ||||||||||||||||||||
Sbjct: 263 gctcctcgtccaccagtccc 282



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>gb|AF061512.1|AF061512 Homo sapiens p53 homolog (p40) mRNA, complete cds
          Length = 2082

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 gctcctcgtccaccagtccc 321
           ||||||||||||||||||||
Sbjct: 533 gctcctcgtccaccagtccc 552



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>dbj|AB016073.1| Homo sapiens mRNA for p51B, complete cds
          Length = 2270

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 gctcctcgtccaccagtccc 321
           ||||||||||||||||||||
Sbjct: 407 gctcctcgtccaccagtccc 426



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>dbj|AB016072.1| Homo sapiens mRNA for p51A, complete cds
          Length = 2816

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 gctcctcgtccaccagtccc 321
           ||||||||||||||||||||
Sbjct: 407 gctcctcgtccaccagtccc 426



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>dbj|AB010153.1| Homo sapiens mRNA for p73H, complete cds
          Length = 2820

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 gctcctcgtccaccagtccc 321
           ||||||||||||||||||||
Sbjct: 156 gctcctcgtccaccagtccc 175


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,252,310
Number of Sequences: 3902068
Number of extensions: 2252310
Number of successful extensions: 37936
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37831
Number of HSP's gapped (non-prelim): 105
length of query: 425
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 403
effective length of database: 17,147,199,772
effective search space: 6910321508116
effective search space used: 6910321508116
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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