Clone Name | rbasd17j02 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_470153.1| Oryza sativa (japonica cultivar-group), mRNA Length = 950 Score = 109 bits (55), Expect = 7e-21 Identities = 88/99 (88%) Strand = Plus / Minus Query: 221 ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 280 |||||||||||||||||||| |||| | ||||||||||| | |||| ||||||||||| Sbjct: 572 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 513 Query: 281 ctcgttgaggaaggccgagttgctcctcgtccaccagtc 319 |||||| ||||| ||| |||||||||||||||||||||| Sbjct: 512 ctcgttcaggaacgcccagttgctcctcgtccaccagtc 474
>dbj|AK119789.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-G12, full insert sequence Length = 972 Score = 109 bits (55), Expect = 7e-21 Identities = 88/99 (88%) Strand = Plus / Minus Query: 221 ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 280 |||||||||||||||||||| |||| | ||||||||||| | |||| ||||||||||| Sbjct: 605 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 546 Query: 281 ctcgttgaggaaggccgagttgctcctcgtccaccagtc 319 |||||| ||||| ||| |||||||||||||||||||||| Sbjct: 545 ctcgttcaggaacgcccagttgctcctcgtccaccagtc 507
>dbj|AK065702.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035P06, full insert sequence Length = 974 Score = 109 bits (55), Expect = 7e-21 Identities = 88/99 (88%) Strand = Plus / Minus Query: 221 ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 280 |||||||||||||||||||| |||| | ||||||||||| | |||| ||||||||||| Sbjct: 596 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 537 Query: 281 ctcgttgaggaaggccgagttgctcctcgtccaccagtc 319 |||||| ||||| ||| |||||||||||||||||||||| Sbjct: 536 ctcgttcaggaacgcccagttgctcctcgtccaccagtc 498
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Plus Query: 221 ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 280 |||||||||||||||||||| |||| | ||||||||||| | |||| ||||||||||| Sbjct: 34429971 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 34430030 Query: 281 ctcgttgaggaaggccgagttgctcctcgtccacc 315 |||||| ||||| ||| |||||||||||||||||| Sbjct: 34430031 ctcgttcaggaacgcccagttgctcctcgtccacc 34430065
>gb|AC096687.5| Oryza sativa chromosome 3 BAC OSJNBa0010E04 genomic sequence, complete sequence Length = 117505 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 221 ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 280 |||||||||||||||||||| |||| | ||||||||||| | |||| ||||||||||| Sbjct: 96196 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 96137 Query: 281 ctcgttgaggaaggccgagttgctcctcgtccacc 315 |||||| ||||| ||| |||||||||||||||||| Sbjct: 96136 ctcgttcaggaacgcccagttgctcctcgtccacc 96102
>gb|AC091247.4| Oryza sativa chromosome 3 BAC OJ1111_B11 genomic sequence, complete sequence Length = 115393 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 221 ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 280 |||||||||||||||||||| |||| | ||||||||||| | |||| ||||||||||| Sbjct: 19723 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 19664 Query: 281 ctcgttgaggaaggccgagttgctcctcgtccacc 315 |||||| ||||| ||| |||||||||||||||||| Sbjct: 19663 ctcgttcaggaacgcccagttgctcctcgtccacc 19629
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Plus Query: 221 ggcgacgtggaactgcggcgtgtaggtgtgcgccttgcccggcctctcttcctgcggcgg 280 |||||||||||||||||||| |||| | ||||||||||| | |||| ||||||||||| Sbjct: 34520443 ggcgacgtggaactgcggcgcgtagttctgcgccttgccggcgatctcctcctgcggcgg 34520502 Query: 281 ctcgttgaggaaggccgagttgctcctcgtccacc 315 |||||| ||||| ||| |||||||||||||||||| Sbjct: 34520503 ctcgttcaggaacgcccagttgctcctcgtccacc 34520537
>gb|AY177888.1| Sorghum bicolor clone BAC IS_91D5 ABA-induced gene, partial sequence Length = 3214 Score = 69.9 bits (35), Expect = 6e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 270 tcctgcggcggctcgttgaggaaggccgagttgctcctcgtccaccagtcccggc 324 ||||||||||||||||||||||| ||| || |||||| |||||||||||| |||| Sbjct: 1798 tcctgcggcggctcgttgaggaacgcccagctgctccgcgtccaccagtcgcggc 1744 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Minus Query: 222 gcgacgtggaactgcggcgtgtag 245 |||||||||||||||||||||||| Sbjct: 1849 gcgacgtggaactgcggcgtgtag 1826
>gb|AC073917.19| Homo sapiens 12q BAC RP11-415D21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163836 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 285 ttgaggaaggccgagttgctcc 306 |||||||||||||||||||||| Sbjct: 75922 ttgaggaaggccgagttgctcc 75901
>gb|AC073532.18|AC073532 Homo sapiens 12 BAC RP11-150F20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 143759 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 285 ttgaggaaggccgagttgctcc 306 |||||||||||||||||||||| Sbjct: 58926 ttgaggaaggccgagttgctcc 58905
>dbj|AB154359.1| Aspergillus awamori xyl mRNA for beta-xylosidase, complete cds Length = 3460 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 209 ggcgttgccggcggcgacgtggaactgcggcgtgtag 245 ||||| || ||||||||||||||| || ||||||||| Sbjct: 1403 ggcgtcgcgggcggcgacgtggaattggggcgtgtag 1367
>gb|AF108944.1|AF108944 Aspergillus niger beta-xylosidase (XLND) mRNA, complete cds Length = 2508 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 209 ggcgttgccggcggcgacgtggaactgcggcgtgtag 245 ||||| || |||||||||||||||||| || |||||| Sbjct: 827 ggcgtcgcgggcggcgacgtggaactggggagtgtag 791
>emb|Z84377.1|ANZ84377 Aspergillus niger xlnD gene Length = 4560 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 209 ggcgttgccggcggcgacgtggaactgcggcgtgtag 245 ||||| || ||||||||||||||| || ||||||||| Sbjct: 2122 ggcgtcgcgggcggcgacgtggaattggggcgtgtag 2086
>ref|XM_516945.1| PREDICTED: Pan troglodytes similar to transformation related protein 63; tumor protein p63; KET protein (LOC460929), mRNA Length = 399 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gctcctcgtccaccagtccc 321 |||||||||||||||||||| Sbjct: 158 gctcctcgtccaccagtccc 177
>ref|NM_003722.3| Homo sapiens tumor protein p73-like (TP73L), mRNA Length = 4932 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gctcctcgtccaccagtccc 321 |||||||||||||||||||| Sbjct: 469 gctcctcgtccaccagtccc 488
>gb|AY341142.1|AY339663S3 Homo sapiens P63 protein gene, exon 4, alternatively spliced Length = 479 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gctcctcgtccaccagtccc 321 |||||||||||||||||||| Sbjct: 156 gctcctcgtccaccagtccc 175
>emb|Y16961.1|HSA16961 Homo sapiens mRNA for KET protein Length = 4849 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gctcctcgtccaccagtccc 321 |||||||||||||||||||| Sbjct: 407 gctcctcgtccaccagtccc 426
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 cggcggcgacgtggaactgc 236 |||||||||||||||||||| Sbjct: 459740 cggcggcgacgtggaactgc 459759
>gb|AF124531.1|HSP63G04 Homo sapiens P63 protein (P63) gene, exon 4 Length = 1193 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gctcctcgtccaccagtccc 321 |||||||||||||||||||| Sbjct: 805 gctcctcgtccaccagtccc 824
>gb|AC063939.15| Homo sapiens 3 BAC RP11-373I6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 180055 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gctcctcgtccaccagtccc 321 |||||||||||||||||||| Sbjct: 28749 gctcctcgtccaccagtccc 28768
>gb|AF091627.1|AF091627 Homo sapiens CUSP mRNA, complete cds Length = 4756 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gctcctcgtccaccagtccc 321 |||||||||||||||||||| Sbjct: 223 gctcctcgtccaccagtccc 242
>gb|AF116771.1|AF116771 Homo sapiens p51 delta mRNA, complete cds Length = 2031 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gctcctcgtccaccagtccc 321 |||||||||||||||||||| Sbjct: 407 gctcctcgtccaccagtccc 426
>gb|AF116759.1|F116756S04 Homo sapiens p51 gene, exon 4 Length = 508 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gctcctcgtccaccagtccc 321 |||||||||||||||||||| Sbjct: 188 gctcctcgtccaccagtccc 207
>gb|BC039815.1| Homo sapiens tumor protein p73-like, mRNA (cDNA clone MGC:48678 IMAGE:5552611), complete cds Length = 4932 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gctcctcgtccaccagtccc 321 |||||||||||||||||||| Sbjct: 469 gctcctcgtccaccagtccc 488
>gb|AF075433.1|AF075433 Homo sapiens DN p63 beta mRNA, complete cds Length = 1386 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gctcctcgtccaccagtccc 321 |||||||||||||||||||| Sbjct: 98 gctcctcgtccaccagtccc 117
>gb|AF075432.1|AF075432 Homo sapiens TA p63 beta mRNA, complete cds Length = 1551 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gctcctcgtccaccagtccc 321 |||||||||||||||||||| Sbjct: 263 gctcctcgtccaccagtccc 282
>gb|AF075431.1|AF075431 Homo sapiens DN p63 alpha mRNA, complete cds Length = 1761 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gctcctcgtccaccagtccc 321 |||||||||||||||||||| Sbjct: 98 gctcctcgtccaccagtccc 117
>gb|AF075430.1|AF075430 Homo sapiens TA p63 alpha mRNA, complete cds Length = 1926 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gctcctcgtccaccagtccc 321 |||||||||||||||||||| Sbjct: 263 gctcctcgtccaccagtccc 282
>gb|AF075429.1|AF075429 Homo sapiens DN p63 gamma mRNA, complete cds Length = 1182 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gctcctcgtccaccagtccc 321 |||||||||||||||||||| Sbjct: 98 gctcctcgtccaccagtccc 117
>gb|AF075428.1|AF075428 Homo sapiens TA p63 gamma mRNA, complete cds Length = 1347 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gctcctcgtccaccagtccc 321 |||||||||||||||||||| Sbjct: 263 gctcctcgtccaccagtccc 282
>gb|AF061512.1|AF061512 Homo sapiens p53 homolog (p40) mRNA, complete cds Length = 2082 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gctcctcgtccaccagtccc 321 |||||||||||||||||||| Sbjct: 533 gctcctcgtccaccagtccc 552
>dbj|AB016073.1| Homo sapiens mRNA for p51B, complete cds Length = 2270 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gctcctcgtccaccagtccc 321 |||||||||||||||||||| Sbjct: 407 gctcctcgtccaccagtccc 426
>dbj|AB016072.1| Homo sapiens mRNA for p51A, complete cds Length = 2816 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gctcctcgtccaccagtccc 321 |||||||||||||||||||| Sbjct: 407 gctcctcgtccaccagtccc 426
>dbj|AB010153.1| Homo sapiens mRNA for p73H, complete cds Length = 2820 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gctcctcgtccaccagtccc 321 |||||||||||||||||||| Sbjct: 156 gctcctcgtccaccagtccc 175 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,252,310 Number of Sequences: 3902068 Number of extensions: 2252310 Number of successful extensions: 37936 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37831 Number of HSP's gapped (non-prelim): 105 length of query: 425 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 403 effective length of database: 17,147,199,772 effective search space: 6910321508116 effective search space used: 6910321508116 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)