ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17j01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4,... 48 0.029
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.029
3dbj|AK071102.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.029
4gb|AC127269.3| Mus musculus BAC clone RP23-432B20 from chromosom... 46 0.11
5gb|AC156503.1| Mus musculus BAC clone RP23-272M11 from 9, comple... 46 0.11
6gb|AY110364.1| Zea mays CL5344_1 mRNA sequence 46 0.11
7gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 42 1.8
8emb|AL138956.17| Human DNA sequence from clone RP11-16D22 on chr... 42 1.8
9gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 7.0
10gb|AC121297.20| Mus musculus chromosome 1, clone RP23-326H11, co... 40 7.0
11gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 7.0
12gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 7.0
13emb|AL807387.10| Mouse DNA sequence from clone RP23-24J10 on chr... 40 7.0
14gb|AC154884.15| Mus musculus chromosome 3, clone RP23-145H17, co... 40 7.0
15gb|AC115043.10| Mus musculus chromosome 3, clone RP24-294N3, com... 40 7.0 
>emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12,
             complete sequence
          Length = 179644

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 64/75 (85%), Gaps = 2/75 (2%)
 Strand = Plus / Plus

                                                                         
Query: 435   ttttcttgagcctcgtccttgctcancaatgcttggtgtgacccgagacgacgccgatca 494
             |||||||| || |||||||||| || ||||| ||||||||||| || || |  |||||||
Sbjct: 85617 ttttcttgcgcttcgtccttgcccaacaatg-ttggtgtgacc-gaaacaatcccgatca 85674

                            
Query: 495   agaacagcagagcta 509
             |||||||||| ||||
Sbjct: 85675 agaacagcagcgcta 85689
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 64/75 (85%), Gaps = 2/75 (2%)
 Strand = Plus / Plus

                                                                            
Query: 435      ttttcttgagcctcgtccttgctcancaatgcttggtgtgacccgagacgacgccgatca 494
                |||||||| || |||||||||| || ||||| ||||||||||| || || |  |||||||
Sbjct: 29948865 ttttcttgcgcttcgtccttgcccaacaatg-ttggtgtgacc-gaaacaatcccgatca 29948922

                               
Query: 495      agaacagcagagcta 509
                |||||||||| ||||
Sbjct: 29948923 agaacagcagcgcta 29948937
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>dbj|AK071102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077L10, full
           insert sequence
          Length = 1310

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 64/75 (85%), Gaps = 2/75 (2%)
 Strand = Plus / Minus

                                                                       
Query: 435 ttttcttgagcctcgtccttgctcancaatgcttggtgtgacccgagacgacgccgatca 494
           |||||||| || |||||||||| || ||||| ||||||||||| || || |  |||||||
Sbjct: 892 ttttcttgcgcttcgtccttgcccaacaatg-ttggtgtgacc-gaaacaatcccgatca 835

                          
Query: 495 agaacagcagagcta 509
           |||||||||| ||||
Sbjct: 834 agaacagcagcgcta 820
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>gb|AC127269.3| Mus musculus BAC clone RP23-432B20 from chromosome 9, complete sequence
          Length = 212660

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 134    gatgggcattgtgcttcccagat 156
              |||||||||||||||||||||||
Sbjct: 160404 gatgggcattgtgcttcccagat 160426
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>gb|AC156503.1| Mus musculus BAC clone RP23-272M11 from 9, complete sequence
          Length = 162078

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 134   gatgggcattgtgcttcccagat 156
             |||||||||||||||||||||||
Sbjct: 53631 gatgggcattgtgcttcccagat 53653
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>gb|AY110364.1| Zea mays CL5344_1 mRNA sequence
          Length = 1292

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Minus

                                                  
Query: 1    atggattgaatgaatctggtnatatatatacaaggatt 38
            |||||||||||||||||||| | ||||||||| |||||
Sbjct: 1281 atggattgaatgaatctggtta-atatatacagggatt 1245
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 332    cccaaatccaatgaagccgccgcat 356
              ||||||||| |||||||||||||||
Sbjct: 847795 cccaaatccgatgaagccgccgcat 847819
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>emb|AL138956.17| Human DNA sequence from clone RP11-16D22 on chromosome 13 Contains the
             5' end of a novel gene, complete sequence
          Length = 165257

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 297   aaaccatgtgtcatccgcctc 317
             |||||||||||||||||||||
Sbjct: 41431 aaaccatgtgtcatccgcctc 41451
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 477    ccgagacgacgccgatcaag 496
              ||||||||||||||||||||
Sbjct: 349223 ccgagacgacgccgatcaag 349204
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>gb|AC121297.20| Mus musculus chromosome 1, clone RP23-326H11, complete sequence
          Length = 207496

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 423    atttctggtgccttttcttg 442
              ||||||||||||||||||||
Sbjct: 100603 atttctggtgccttttcttg 100622
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 386    gtggctcctcttcggtgttcatga 409
              |||||| |||||||||||||||||
Sbjct: 750582 gtggctgctcttcggtgttcatga 750605
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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 224     tccggcaggcgggtgatggg 243
               ||||||||||||||||||||
Sbjct: 1906763 tccggcaggcgggtgatggg 1906744
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>emb|AL807387.10| Mouse DNA sequence from clone RP23-24J10 on chromosome 4, complete
              sequence
          Length = 241148

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    atgggcattgtgcttcccag 154
              ||||||||||||||||||||
Sbjct: 140568 atgggcattgtgcttcccag 140587
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>gb|AC154884.15| Mus musculus chromosome 3, clone RP23-145H17, complete sequence
          Length = 231400

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 173    atgtggggggtgaccatgaaatgaaacagtgt 204
              ||||| |||| |||| ||||||||||||||||
Sbjct: 223436 atgtgtggggagaccttgaaatgaaacagtgt 223467
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>gb|AC115043.10| Mus musculus chromosome 3, clone RP24-294N3, complete sequence
          Length = 150336

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 173   atgtggggggtgaccatgaaatgaaacagtgt 204
             ||||| |||| |||| ||||||||||||||||
Sbjct: 45227 atgtgtggggagaccttgaaatgaaacagtgt 45196


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,870,059
Number of Sequences: 3902068
Number of extensions: 3870059
Number of successful extensions: 57809
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 57696
Number of HSP's gapped (non-prelim): 117
length of query: 516
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 493
effective length of database: 17,143,297,704
effective search space: 8451645768072
effective search space used: 8451645768072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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