ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd17i23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_193728.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 954 Score = 224 bits (113), Expect = 2e-55 Identities = 212/246 (86%) Strand = Plus / Minus Query: 328 ctccacttacgctgccattaccatttngaatgancttttcctctgaaggtagatttttca 387 |||||||| | ||||||||||||||| |||| | ||| |||||||||||||||||||||| Sbjct: 919 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 860 Query: 388 ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 447 | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| |||| Sbjct: 859 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 800 Query: 448 gcacagctcccgatacaggagctaccaatccaagttttccctcgtctataatgctgtcaa 507 |||||||||| | | |||||| ||||| || | || || || ||||||| |||||||| Sbjct: 799 gcacagctcctgccaaaggagcaaccaaccccggcttcccttcatctataacgctgtcaa 740 Query: 508 ttattccataatccttggcctcccaaggactcatgaaagagtcgaacctcgtgtnctcat 567 ||| |||||||||||||| |||||||||||||||||| |||| ||| | || | ||||| Sbjct: 739 ctatgccataatccttggcttcccaaggactcatgaaatagtcaaactttgtatcctcat 680 Query: 568 caatct 573 |||||| Sbjct: 679 caatct 674
>gb|AF514859.1| Oryza sativa (indica cultivar-group) ATP-dependent Clp protease (Pi-HIT-1) gene, complete cds Length = 2750 Score = 224 bits (113), Expect = 2e-55 Identities = 212/246 (86%) Strand = Plus / Minus Query: 328 ctccacttacgctgccattaccatttngaatgancttttcctctgaaggtagatttttca 387 |||||||| | ||||||||||||||| |||| | ||| |||||||||||||||||||||| Sbjct: 2182 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 2123 Query: 388 ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 447 | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| |||| Sbjct: 2122 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 2063 Query: 448 gcacagctcccgatacaggagctaccaatccaagttttccctcgtctataatgctgtcaa 507 |||||||||| | | |||||| ||||| || | || || || ||||||| |||||||| Sbjct: 2062 gcacagctcctgccaaaggagcaaccaaccccggcttcccttcatctataacgctgtcaa 2003 Query: 508 ttattccataatccttggcctcccaaggactcatgaaagagtcgaacctcgtgtnctcat 567 ||| |||||||||||||| |||||||||||||||||| |||| ||| | || | ||||| Sbjct: 2002 ctatgccataatccttggcttcccaaggactcatgaaatagtcaaactttgtatcctcat 1943 Query: 568 caatct 573 |||||| Sbjct: 1942 caatct 1937
>gb|AF450251.1|AF450251 Oryza sativa blast-resistant mRNA, partial sequence Length = 613 Score = 224 bits (113), Expect = 2e-55 Identities = 212/246 (86%) Strand = Plus / Minus Query: 328 ctccacttacgctgccattaccatttngaatgancttttcctctgaaggtagatttttca 387 |||||||| | ||||||||||||||| |||| | ||| |||||||||||||||||||||| Sbjct: 369 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 310 Query: 388 ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 447 | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| |||| Sbjct: 309 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 250 Query: 448 gcacagctcccgatacaggagctaccaatccaagttttccctcgtctataatgctgtcaa 507 |||||||||| | | |||||| ||||| || | || || || ||||||| |||||||| Sbjct: 249 gcacagctcctgccaaaggagcaaccaaccccggcttcccttcatctataacgctgtcaa 190 Query: 508 ttattccataatccttggcctcccaaggactcatgaaagagtcgaacctcgtgtnctcat 567 ||| |||||||||||||| |||||||||||||||||| |||| ||| | || | ||||| Sbjct: 189 ctatgccataatccttggcttcccaaggactcatgaaatagtcaaactttgtatcctcat 130 Query: 568 caatct 573 |||||| Sbjct: 129 caatct 124
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 224 bits (113), Expect = 2e-55 Identities = 212/246 (86%) Strand = Plus / Minus Query: 328 ctccacttacgctgccattaccatttngaatgancttttcctctgaaggtagatttttca 387 |||||||| | ||||||||||||||| |||| | ||| |||||||||||||||||||||| Sbjct: 17747747 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 17747688 Query: 388 ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 447 | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| |||| Sbjct: 17747687 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 17747628 Query: 448 gcacagctcccgatacaggagctaccaatccaagttttccctcgtctataatgctgtcaa 507 |||||||||| | | |||||| ||||| || | || || || ||||||| |||||||| Sbjct: 17747627 gcacagctcctgccaaaggagcaaccaaccccggcttcccttcatctataacgctgtcaa 17747568 Query: 508 ttattccataatccttggcctcccaaggactcatgaaagagtcgaacctcgtgtnctcat 567 ||| |||||||||||||| |||||||||||||||||| |||| ||| | || | ||||| Sbjct: 17747567 ctatgccataatccttggcttcccaaggactcatgaaatagtcaaactttgtatcctcat 17747508 Query: 568 caatct 573 |||||| Sbjct: 17747507 caatct 17747502
>dbj|AP003217.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0094H06 Length = 147245 Score = 224 bits (113), Expect = 2e-55 Identities = 212/246 (86%) Strand = Plus / Minus Query: 328 ctccacttacgctgccattaccatttngaatgancttttcctctgaaggtagatttttca 387 |||||||| | ||||||||||||||| |||| | ||| |||||||||||||||||||||| Sbjct: 129282 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 129223 Query: 388 ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 447 | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| |||| Sbjct: 129222 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 129163 Query: 448 gcacagctcccgatacaggagctaccaatccaagttttccctcgtctataatgctgtcaa 507 |||||||||| | | |||||| ||||| || | || || || ||||||| |||||||| Sbjct: 129162 gcacagctcctgccaaaggagcaaccaaccccggcttcccttcatctataacgctgtcaa 129103 Query: 508 ttattccataatccttggcctcccaaggactcatgaaagagtcgaacctcgtgtnctcat 567 ||| |||||||||||||| |||||||||||||||||| |||| ||| | || | ||||| Sbjct: 129102 ctatgccataatccttggcttcccaaggactcatgaaatagtcaaactttgtatcctcat 129043 Query: 568 caatct 573 |||||| Sbjct: 129042 caatct 129037
>dbj|AK102473.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094H09, full insert sequence Length = 1257 Score = 224 bits (113), Expect = 2e-55 Identities = 212/246 (86%) Strand = Plus / Minus Query: 328 ctccacttacgctgccattaccatttngaatgancttttcctctgaaggtagatttttca 387 |||||||| | ||||||||||||||| |||| | ||| |||||||||||||||||||||| Sbjct: 987 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 928 Query: 388 ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 447 | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| |||| Sbjct: 927 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 868 Query: 448 gcacagctcccgatacaggagctaccaatccaagttttccctcgtctataatgctgtcaa 507 |||||||||| | | |||||| ||||| || | || || || ||||||| |||||||| Sbjct: 867 gcacagctcctgccaaaggagcaaccaaccccggcttcccttcatctataacgctgtcaa 808 Query: 508 ttattccataatccttggcctcccaaggactcatgaaagagtcgaacctcgtgtnctcat 567 ||| |||||||||||||| |||||||||||||||||| |||| ||| | || | ||||| Sbjct: 807 ctatgccataatccttggcttcccaaggactcatgaaatagtcaaactttgtatcctcat 748 Query: 568 caatct 573 |||||| Sbjct: 747 caatct 742
>gb|AY109053.1| Zea mays PCO106983 mRNA sequence Length = 704 Score = 117 bits (59), Expect = 4e-23 Identities = 215/268 (80%) Strand = Plus / Plus Query: 306 gcctccttcagcattccatcagctccacttacgctgccattaccatttngaatgancttt 365 |||||||| ||| |||||||| ||||| || | || || |||||||| |||| | || Sbjct: 176 gcctccttgagctttccatcatctccagttgcacttccgttaccattgtgaattagtttc 235 Query: 366 tcctctgaaggtagatttttcattatttttctagttggtcctgaagcgttccacaagtac 425 |||||||||||||||| |||||| || || || || || || ||||| |||||||||||| Sbjct: 236 tcctctgaaggtagatgtttcatgatcttcctggtcggccccgaagccttccacaagtac 295 Query: 426 cacatacgtgattttgggggtggcacagctcccgatacaggagctaccaatccaagtttt 485 |||| ||| ||||| || || || |||| ||| | | ||||||||||| || |||| Sbjct: 296 cacacacgcgatttgggaggcggaacagatcctgccaagggagctaccaaccctggtttc 355 Query: 486 ccctcgtctataatgctgtcaattattccataatccttggcctcccaaggactcatgaaa 545 ||||| ||||| || |||||| ||| |||||||||||||| ||| |||||||||||||| Sbjct: 356 ccctcatctatgatattgtcaactatcccataatccttggcttccgaaggactcatgaaa 415 Query: 546 gagtcgaacctcgtgtnctcatcaatct 573 | || ||| |||||| |||||||||| Sbjct: 416 taatcaaacttcgtgtcttcatcaatct 443
>emb|AL445532.8| Human DNA sequence from clone RP11-263K15 on chromosome 9 Contains the 3' end of the NTRK2 gene for Neurotrophic tyrosine kinase, receptor, type 2 (TRKB), complete sequence Length = 171629 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 383 tttcattatttttctagttggt 404 |||||||||||||||||||||| Sbjct: 49835 tttcattatttttctagttggt 49856
>gb|AC182700.2| Populus trichocarpa clone Pop1-73H20, complete sequence Length = 90044 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 121 gaaaaataatattacaataca 141 ||||||||||||||||||||| Sbjct: 19341 gaaaaataatattacaataca 19321
>emb|AL596327.5| Human DNA sequence from clone RP11-110F24 on chromosome 1, complete sequence Length = 94737 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 381 tttttcattatttttctagtt 401 ||||||||||||||||||||| Sbjct: 33427 tttttcattatttttctagtt 33447
>gb|AC025428.10| Homo sapiens chromosome 10 clone RP11-475D12, complete sequence Length = 174906 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 114 tatacaggaaaaataatatta 134 ||||||||||||||||||||| Sbjct: 81071 tatacaggaaaaataatatta 81051
>gb|AC167362.2| Mus musculus BAC clone RP23-74P17 from chromosome 7, complete sequence Length = 215537 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 aggaaaaataatattacaat 138 |||||||||||||||||||| Sbjct: 176658 aggaaaaataatattacaat 176639
>emb|CR391993.14| Zebrafish DNA sequence from clone DKEY-3E17 in linkage group 22, complete sequence Length = 122651 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 96 agatcaataaatcaaccgtataca 119 ||||||||||||||||| |||||| Sbjct: 64421 agatcaataaatcaaccatataca 64398
>gb|AC145868.2| Pan troglodytes BAC clone RP43-39F11 from 7, complete sequence Length = 209787 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 gcactgcaagatcaataaat 107 |||||||||||||||||||| Sbjct: 71760 gcactgcaagatcaataaat 71779
>gb|BC061232.1| Mus musculus oxoglutarate dehydrogenase (lipoamide), mRNA (cDNA clone IMAGE:6535602), complete cds Length = 1980 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 403 gtcctgaagcgttccacaagtacc 426 |||||||||| ||||||||||||| Sbjct: 76 gtcctgaagccttccacaagtacc 53
>gb|AC122046.2| Mus musculus BAC clone RP24-449N4 from 7, complete sequence Length = 150101 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 aggaaaaataatattacaat 138 |||||||||||||||||||| Sbjct: 70766 aggaaaaataatattacaat 70785
>ref|XM_651128.1| Entamoeba histolytica HM-1:IMSS ubiquitin carboxyl-terminal hydrolase (16.t00053) partial mRNA Length = 5580 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 gtagatttttcattattttt 395 |||||||||||||||||||| Sbjct: 1354 gtagatttttcattattttt 1335
>gb|BC013670.1| Mus musculus oxoglutarate dehydrogenase (lipoamide), mRNA (cDNA clone MGC:19042 IMAGE:4188988), complete cds Length = 4035 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 403 gtcctgaagcgttccacaagtacc 426 |||||||||| ||||||||||||| Sbjct: 54 gtcctgaagccttccacaagtacc 31
>gb|AC074000.8| Homo sapiens BAC clone CTD-2023N18 from 7, complete sequence Length = 136723 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 gcactgcaagatcaataaat 107 |||||||||||||||||||| Sbjct: 53040 gcactgcaagatcaataaat 53021
>gb|AF045646.3| Caenorhabditis elegans cosmid F56B3, complete sequence Length = 39874 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 agatttttcattatttttct 397 |||||||||||||||||||| Sbjct: 36239 agatttttcattatttttct 36258
>emb|AL359762.24| Human DNA sequence from clone RP11-118B23 on chromosome 1 Contains the 3' end of the gene for RNA processing factor 1 (RPF1), the GNG5 gene for guanine nucleotide binding protein (G protein), gamma 5, the SPATA1 gene for spermatogenesis associated 1, the CTBS gene for chitobiase, di-N-acetyl- and a CpG island, complete sequence Length = 125565 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 atttttcattatttttctag 399 |||||||||||||||||||| Sbjct: 6107 atttttcattatttttctag 6126
>emb|AL121761.5|HSJ122P22 Human DNA sequence from clone RP1-122P22 on chromosome 20 Contains the 3' end the SLC24A3 gene for solute carrier family 24 (sodium/potassium/calcium exchanger) member 3, a novel gene and a CpG island, complete sequence Length = 118990 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 acctaggaacacaaaataag 49 |||||||||||||||||||| Sbjct: 111589 acctaggaacacaaaataag 111570
>emb|AL607152.21| Mouse DNA sequence from clone RP23-198N14 on chromosome 11, complete sequence Length = 232408 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 403 gtcctgaagcgttccacaagtacc 426 |||||||||| ||||||||||||| Sbjct: 104189 gtcctgaagccttccacaagtacc 104166
>gb|AC021956.8| Homo sapiens chromosome 11, clone RP11-447I3, complete sequence Length = 197864 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 tttcattatttttctagttg 402 |||||||||||||||||||| Sbjct: 178905 tttcattatttttctagttg 178924
>gb|AC162615.2| Mus musculus chromosome 7, clone RP23-94C20, complete sequence Length = 130735 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 372 gaaggtagatttttcattattttt 395 ||||||||||||| |||||||||| Sbjct: 41590 gaaggtagattttgcattattttt 41567
>dbj|AK220536.1| Mus musculus mRNA for mKIAA4192 protein Length = 4089 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 403 gtcctgaagcgttccacaagtacc 426 |||||||||| ||||||||||||| Sbjct: 82 gtcctgaagccttccacaagtacc 59
>gb|AC104442.2| Homo sapiens chromosome 3 clone RP11-905F6, complete sequence Length = 219227 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 tttcctctgaaggtagattt 383 |||||||||||||||||||| Sbjct: 4734 tttcctctgaaggtagattt 4715
>gb|AC021006.7| Homo sapiens chromosome 11, clone RP11-124G5, complete sequence Length = 183772 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 tttcattatttttctagttg 402 |||||||||||||||||||| Sbjct: 87166 tttcattatttttctagttg 87185
>ref|NM_010956.2| Mus musculus oxoglutarate dehydrogenase (lipoamide) (Ogdh), mRNA Length = 6638 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 403 gtcctgaagcgttccacaagtacc 426 |||||||||| ||||||||||||| Sbjct: 121 gtcctgaagccttccacaagtacc 98
>dbj|AK147289.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1007N08 product:oxoglutarate dehydrogenase (lipoamide), full insert sequence Length = 6638 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 403 gtcctgaagcgttccacaagtacc 426 |||||||||| ||||||||||||| Sbjct: 121 gtcctgaagccttccacaagtacc 98
>dbj|AK150009.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530117I02 product:oxoglutarate dehydrogenase (lipoamide), full insert sequence Length = 4127 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 403 gtcctgaagcgttccacaagtacc 426 |||||||||| ||||||||||||| Sbjct: 86 gtcctgaagccttccacaagtacc 63
>gb|AC013603.17| Homo sapiens, clone RP11-10D7, complete sequence Length = 177839 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 ggaaaaataatattacaata 139 |||||||||||||||||||| Sbjct: 16833 ggaaaaataatattacaata 16852
>dbj|AK169286.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:I920176A16 product:oxoglutarate dehydrogenase (lipoamide), full insert sequence Length = 4155 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 403 gtcctgaagcgttccacaagtacc 426 |||||||||| ||||||||||||| Sbjct: 112 gtcctgaagccttccacaagtacc 89
>dbj|AK088582.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430020N12 product:oxoglutarate dehydrogenase (lipoamide) (EC 1.2.4.2) E1 component (fragment) homolog [Mus musculus], full insert sequence Length = 3554 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 403 gtcctgaagcgttccacaagtacc 426 |||||||||| ||||||||||||| Sbjct: 48 gtcctgaagccttccacaagtacc 25
>dbj|AK051166.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130008K15 product:unclassifiable, full insert sequence Length = 3423 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 cacctaggaacacaaaataa 48 |||||||||||||||||||| Sbjct: 2106 cacctaggaacacaaaataa 2087
>dbj|AK008811.1| Mus musculus adult male stomach cDNA, RIKEN full-length enriched library, clone:2210403E04 product:unclassifiable, full insert sequence Length = 779 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 403 gtcctgaagcgttccacaagtacc 426 |||||||||| ||||||||||||| Sbjct: 76 gtcctgaagccttccacaagtacc 53
>gb|AC138058.2| Homo sapiens chromosome 3 clone RP11-298C2, complete sequence Length = 154123 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 tttcctctgaaggtagattt 383 |||||||||||||||||||| Sbjct: 79348 tttcctctgaaggtagattt 79329
>gb|AC155998.2| Xenopus tropicalis clone ISB1-313L20, complete sequence Length = 86223 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 tttttcattatttttctagt 400 |||||||||||||||||||| Sbjct: 79753 tttttcattatttttctagt 79734
>gb|AC122281.2| Mus musculus chromosome 16 clone RP23-239I17, complete sequence Length = 204608 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 cacctaggaacacaaaataa 48 |||||||||||||||||||| Sbjct: 119445 cacctaggaacacaaaataa 119464
>dbj|AK201619.1| Mus musculus cDNA, clone:Y1G0138N03, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000064907, based on BLAT search Length = 172 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 403 gtcctgaagcgttccacaagtacc 426 |||||||||| ||||||||||||| Sbjct: 70 gtcctgaagccttccacaagtacc 47
>emb|BX936298.17| Zebrafish DNA sequence from clone DKEY-78L4 in linkage group 22, complete sequence Length = 234949 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 agatcaataaatcaaccgtataca 119 ||||||||||||||||| |||||| Sbjct: 65712 agatcaataaatcaaccatataca 65735
>emb|CR456625.13| Zebrafish DNA sequence from clone DKEY-76G24 in linkage group 12, complete sequence Length = 228447 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 494 tataatgctgtcaattattc 513 |||||||||||||||||||| Sbjct: 121266 tataatgctgtcaattattc 121285
>emb|AL163051.5|CNS01RIA Human chromosome 14 DNA sequence BAC R-872J21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 188020 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 agatttttcattatttttctagtt 401 ||||||| |||||||||||||||| Sbjct: 96509 agattttacattatttttctagtt 96532
>gb|AC004066.1|AC004066 Homo sapiens chromosome 4 clone B353C18 map 4q25, complete sequence Length = 139877 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 atacaggaaaaataatattacaat 138 |||||| ||||||||||||||||| Sbjct: 135824 atacagtaaaaataatattacaat 135847
>emb|Z11126.1|CEZK643 Caenorhabditis elegans Cosmid ZK643, complete sequence Length = 39534 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 tttttcattatttttctagt 400 |||||||||||||||||||| Sbjct: 15270 tttttcattatttttctagt 15289
>emb|AL672074.19| Mouse DNA sequence from clone RP23-404I18 on chromosome X, complete sequence Length = 171593 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 tttcattatttttctagttg 402 |||||||||||||||||||| Sbjct: 127922 tttcattatttttctagttg 127903
>emb|AL626772.10| Mouse DNA sequence from clone RP23-90D4 on chromosome 4, complete sequence Length = 230614 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 atacaggaaaaataatatta 134 |||||||||||||||||||| Sbjct: 77737 atacaggaaaaataatatta 77718
>gb|AC091144.12| Homo sapiens chromosome 8, clone RP11-359B20, complete sequence Length = 185872 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ggaaaaataatattacaata 139 |||||||||||||||||||| Sbjct: 6533 ggaaaaataatattacaata 6514 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,063,752 Number of Sequences: 3902068 Number of extensions: 5063752 Number of successful extensions: 330834 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 330600 Number of HSP's gapped (non-prelim): 227 length of query: 573 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 550 effective length of database: 17,143,297,704 effective search space: 9428813737200 effective search space used: 9428813737200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
