ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17i23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_193728.1| Oryza sativa (japonica cultivar-group), predic... 224 2e-55
2gb|AF514859.1| Oryza sativa (indica cultivar-group) ATP-dependen... 224 2e-55
3gb|AF450251.1|AF450251 Oryza sativa blast-resistant mRNA, partia... 224 2e-55
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 224 2e-55
5dbj|AP003217.3| Oryza sativa (japonica cultivar-group) genomic D... 224 2e-55
6dbj|AK102473.1| Oryza sativa (japonica cultivar-group) cDNA clon... 224 2e-55
7gb|AY109053.1| Zea mays PCO106983 mRNA sequence 117 4e-23
8emb|AL445532.8| Human DNA sequence from clone RP11-263K15 on chr... 44 0.50
9gb|AC182700.2| Populus trichocarpa clone Pop1-73H20, complete se... 42 2.0
10emb|AL596327.5| Human DNA sequence from clone RP11-110F24 on chr... 42 2.0
11gb|AC025428.10| Homo sapiens chromosome 10 clone RP11-475D12, co... 42 2.0
12gb|AC167362.2| Mus musculus BAC clone RP23-74P17 from chromosome... 40 7.8
13emb|CR391993.14| Zebrafish DNA sequence from clone DKEY-3E17 in ... 40 7.8
14gb|AC145868.2| Pan troglodytes BAC clone RP43-39F11 from 7, comp... 40 7.8
15gb|BC061232.1| Mus musculus oxoglutarate dehydrogenase (lipoamid... 40 7.8
16gb|AC122046.2| Mus musculus BAC clone RP24-449N4 from 7, complet... 40 7.8
17ref|XM_651128.1| Entamoeba histolytica HM-1:IMSS ubiquitin carbo... 40 7.8
18gb|BC013670.1| Mus musculus oxoglutarate dehydrogenase (lipoamid... 40 7.8
19gb|AC074000.8| Homo sapiens BAC clone CTD-2023N18 from 7, comple... 40 7.8
20gb|AF045646.3| Caenorhabditis elegans cosmid F56B3, complete seq... 40 7.8
21emb|AL359762.24| Human DNA sequence from clone RP11-118B23 on ch... 40 7.8
22emb|AL121761.5|HSJ122P22 Human DNA sequence from clone RP1-122P2... 40 7.8
23emb|AL607152.21| Mouse DNA sequence from clone RP23-198N14 on ch... 40 7.8
24gb|AC021956.8| Homo sapiens chromosome 11, clone RP11-447I3, com... 40 7.8
25gb|AC162615.2| Mus musculus chromosome 7, clone RP23-94C20, comp... 40 7.8
26dbj|AK220536.1| Mus musculus mRNA for mKIAA4192 protein 40 7.8
27gb|AC104442.2| Homo sapiens chromosome 3 clone RP11-905F6, compl... 40 7.8
28gb|AC021006.7| Homo sapiens chromosome 11, clone RP11-124G5, com... 40 7.8
29ref|NM_010956.2| Mus musculus oxoglutarate dehydrogenase (lipoam... 40 7.8
30dbj|AK147289.1| Mus musculus cDNA, RIKEN full-length enriched li... 40 7.8
31dbj|AK150009.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 40 7.8
32gb|AC013603.17| Homo sapiens, clone RP11-10D7, complete sequence 40 7.8
33dbj|AK169286.1| Mus musculus cDNA, RIKEN full-length enriched li... 40 7.8
34dbj|AK088582.1| Mus musculus 2 days neonate thymus thymic cells ... 40 7.8
35dbj|AK051166.1| Mus musculus 12 days embryo spinal ganglion cDNA... 40 7.8
36dbj|AK008811.1| Mus musculus adult male stomach cDNA, RIKEN full... 40 7.8
37gb|AC138058.2| Homo sapiens chromosome 3 clone RP11-298C2, compl... 40 7.8
38gb|AC155998.2| Xenopus tropicalis clone ISB1-313L20, complete se... 40 7.8
39gb|AC122281.2| Mus musculus chromosome 16 clone RP23-239I17, com... 40 7.8
40dbj|AK201619.1| Mus musculus cDNA, clone:Y1G0138N03, strand:minu... 40 7.8
41emb|BX936298.17| Zebrafish DNA sequence from clone DKEY-78L4 in ... 40 7.8
42emb|CR456625.13| Zebrafish DNA sequence from clone DKEY-76G24 in... 40 7.8
43emb|AL163051.5|CNS01RIA Human chromosome 14 DNA sequence BAC R-8... 40 7.8
44gb|AC004066.1|AC004066 Homo sapiens chromosome 4 clone B353C18 m... 40 7.8
45emb|Z11126.1|CEZK643 Caenorhabditis elegans Cosmid ZK643, comple... 40 7.8
46emb|AL672074.19| Mouse DNA sequence from clone RP23-404I18 on ch... 40 7.8
47emb|AL626772.10| Mouse DNA sequence from clone RP23-90D4 on chro... 40 7.8
48gb|AC091144.12| Homo sapiens chromosome 8, clone RP11-359B20, co... 40 7.8

>ref|NM_193728.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 954

 Score =  224 bits (113), Expect = 2e-55
 Identities = 212/246 (86%)
 Strand = Plus / Minus

                                                                       
Query: 328 ctccacttacgctgccattaccatttngaatgancttttcctctgaaggtagatttttca 387
           |||||||| | ||||||||||||||| |||| | ||| ||||||||||||||||||||||
Sbjct: 919 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 860

                                                                       
Query: 388 ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 447
           | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| ||||
Sbjct: 859 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 800

                                                                       
Query: 448 gcacagctcccgatacaggagctaccaatccaagttttccctcgtctataatgctgtcaa 507
           |||||||||| |  | |||||| ||||| ||  | || || || ||||||| ||||||||
Sbjct: 799 gcacagctcctgccaaaggagcaaccaaccccggcttcccttcatctataacgctgtcaa 740

                                                                       
Query: 508 ttattccataatccttggcctcccaaggactcatgaaagagtcgaacctcgtgtnctcat 567
            ||| |||||||||||||| |||||||||||||||||| |||| ||| | || | |||||
Sbjct: 739 ctatgccataatccttggcttcccaaggactcatgaaatagtcaaactttgtatcctcat 680

                 
Query: 568 caatct 573
           ||||||
Sbjct: 679 caatct 674



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>gb|AF514859.1| Oryza sativa (indica cultivar-group) ATP-dependent Clp protease
            (Pi-HIT-1) gene, complete cds
          Length = 2750

 Score =  224 bits (113), Expect = 2e-55
 Identities = 212/246 (86%)
 Strand = Plus / Minus

                                                                        
Query: 328  ctccacttacgctgccattaccatttngaatgancttttcctctgaaggtagatttttca 387
            |||||||| | ||||||||||||||| |||| | ||| ||||||||||||||||||||||
Sbjct: 2182 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 2123

                                                                        
Query: 388  ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 447
            | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| ||||
Sbjct: 2122 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 2063

                                                                        
Query: 448  gcacagctcccgatacaggagctaccaatccaagttttccctcgtctataatgctgtcaa 507
            |||||||||| |  | |||||| ||||| ||  | || || || ||||||| ||||||||
Sbjct: 2062 gcacagctcctgccaaaggagcaaccaaccccggcttcccttcatctataacgctgtcaa 2003

                                                                        
Query: 508  ttattccataatccttggcctcccaaggactcatgaaagagtcgaacctcgtgtnctcat 567
             ||| |||||||||||||| |||||||||||||||||| |||| ||| | || | |||||
Sbjct: 2002 ctatgccataatccttggcttcccaaggactcatgaaatagtcaaactttgtatcctcat 1943

                  
Query: 568  caatct 573
            ||||||
Sbjct: 1942 caatct 1937



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>gb|AF450251.1|AF450251 Oryza sativa blast-resistant mRNA, partial sequence
          Length = 613

 Score =  224 bits (113), Expect = 2e-55
 Identities = 212/246 (86%)
 Strand = Plus / Minus

                                                                       
Query: 328 ctccacttacgctgccattaccatttngaatgancttttcctctgaaggtagatttttca 387
           |||||||| | ||||||||||||||| |||| | ||| ||||||||||||||||||||||
Sbjct: 369 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 310

                                                                       
Query: 388 ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 447
           | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| ||||
Sbjct: 309 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 250

                                                                       
Query: 448 gcacagctcccgatacaggagctaccaatccaagttttccctcgtctataatgctgtcaa 507
           |||||||||| |  | |||||| ||||| ||  | || || || ||||||| ||||||||
Sbjct: 249 gcacagctcctgccaaaggagcaaccaaccccggcttcccttcatctataacgctgtcaa 190

                                                                       
Query: 508 ttattccataatccttggcctcccaaggactcatgaaagagtcgaacctcgtgtnctcat 567
            ||| |||||||||||||| |||||||||||||||||| |||| ||| | || | |||||
Sbjct: 189 ctatgccataatccttggcttcccaaggactcatgaaatagtcaaactttgtatcctcat 130

                 
Query: 568 caatct 573
           ||||||
Sbjct: 129 caatct 124



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  224 bits (113), Expect = 2e-55
 Identities = 212/246 (86%)
 Strand = Plus / Minus

                                                                            
Query: 328      ctccacttacgctgccattaccatttngaatgancttttcctctgaaggtagatttttca 387
                |||||||| | ||||||||||||||| |||| | ||| ||||||||||||||||||||||
Sbjct: 17747747 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 17747688

                                                                            
Query: 388      ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 447
                | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| ||||
Sbjct: 17747687 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 17747628

                                                                            
Query: 448      gcacagctcccgatacaggagctaccaatccaagttttccctcgtctataatgctgtcaa 507
                |||||||||| |  | |||||| ||||| ||  | || || || ||||||| ||||||||
Sbjct: 17747627 gcacagctcctgccaaaggagcaaccaaccccggcttcccttcatctataacgctgtcaa 17747568

                                                                            
Query: 508      ttattccataatccttggcctcccaaggactcatgaaagagtcgaacctcgtgtnctcat 567
                 ||| |||||||||||||| |||||||||||||||||| |||| ||| | || | |||||
Sbjct: 17747567 ctatgccataatccttggcttcccaaggactcatgaaatagtcaaactttgtatcctcat 17747508

                      
Query: 568      caatct 573
                ||||||
Sbjct: 17747507 caatct 17747502



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>dbj|AP003217.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0094H06
          Length = 147245

 Score =  224 bits (113), Expect = 2e-55
 Identities = 212/246 (86%)
 Strand = Plus / Minus

                                                                          
Query: 328    ctccacttacgctgccattaccatttngaatgancttttcctctgaaggtagatttttca 387
              |||||||| | ||||||||||||||| |||| | ||| ||||||||||||||||||||||
Sbjct: 129282 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 129223

                                                                          
Query: 388    ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 447
              | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| ||||
Sbjct: 129222 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 129163

                                                                          
Query: 448    gcacagctcccgatacaggagctaccaatccaagttttccctcgtctataatgctgtcaa 507
              |||||||||| |  | |||||| ||||| ||  | || || || ||||||| ||||||||
Sbjct: 129162 gcacagctcctgccaaaggagcaaccaaccccggcttcccttcatctataacgctgtcaa 129103

                                                                          
Query: 508    ttattccataatccttggcctcccaaggactcatgaaagagtcgaacctcgtgtnctcat 567
               ||| |||||||||||||| |||||||||||||||||| |||| ||| | || | |||||
Sbjct: 129102 ctatgccataatccttggcttcccaaggactcatgaaatagtcaaactttgtatcctcat 129043

                    
Query: 568    caatct 573
              ||||||
Sbjct: 129042 caatct 129037



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>dbj|AK102473.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094H09, full
           insert sequence
          Length = 1257

 Score =  224 bits (113), Expect = 2e-55
 Identities = 212/246 (86%)
 Strand = Plus / Minus

                                                                       
Query: 328 ctccacttacgctgccattaccatttngaatgancttttcctctgaaggtagatttttca 387
           |||||||| | ||||||||||||||| |||| | ||| ||||||||||||||||||||||
Sbjct: 987 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 928

                                                                       
Query: 388 ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 447
           | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| ||||
Sbjct: 927 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 868

                                                                       
Query: 448 gcacagctcccgatacaggagctaccaatccaagttttccctcgtctataatgctgtcaa 507
           |||||||||| |  | |||||| ||||| ||  | || || || ||||||| ||||||||
Sbjct: 867 gcacagctcctgccaaaggagcaaccaaccccggcttcccttcatctataacgctgtcaa 808

                                                                       
Query: 508 ttattccataatccttggcctcccaaggactcatgaaagagtcgaacctcgtgtnctcat 567
            ||| |||||||||||||| |||||||||||||||||| |||| ||| | || | |||||
Sbjct: 807 ctatgccataatccttggcttcccaaggactcatgaaatagtcaaactttgtatcctcat 748

                 
Query: 568 caatct 573
           ||||||
Sbjct: 747 caatct 742



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>gb|AY109053.1| Zea mays PCO106983 mRNA sequence
          Length = 704

 Score =  117 bits (59), Expect = 4e-23
 Identities = 215/268 (80%)
 Strand = Plus / Plus

                                                                       
Query: 306 gcctccttcagcattccatcagctccacttacgctgccattaccatttngaatgancttt 365
           |||||||| ||| |||||||| ||||| || | || || ||||||||  |||| |  || 
Sbjct: 176 gcctccttgagctttccatcatctccagttgcacttccgttaccattgtgaattagtttc 235

                                                                       
Query: 366 tcctctgaaggtagatttttcattatttttctagttggtcctgaagcgttccacaagtac 425
           |||||||||||||||| |||||| || || || || || || ||||| ||||||||||||
Sbjct: 236 tcctctgaaggtagatgtttcatgatcttcctggtcggccccgaagccttccacaagtac 295

                                                                       
Query: 426 cacatacgtgattttgggggtggcacagctcccgatacaggagctaccaatccaagtttt 485
           |||| ||| ||||| || || || |||| ||| |  |  ||||||||||| ||  |||| 
Sbjct: 296 cacacacgcgatttgggaggcggaacagatcctgccaagggagctaccaaccctggtttc 355

                                                                       
Query: 486 ccctcgtctataatgctgtcaattattccataatccttggcctcccaaggactcatgaaa 545
           ||||| ||||| ||  |||||| ||| |||||||||||||| ||| ||||||||||||||
Sbjct: 356 ccctcatctatgatattgtcaactatcccataatccttggcttccgaaggactcatgaaa 415

                                       
Query: 546 gagtcgaacctcgtgtnctcatcaatct 573
            | || ||| ||||||  ||||||||||
Sbjct: 416 taatcaaacttcgtgtcttcatcaatct 443



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>emb|AL445532.8| Human DNA sequence from clone RP11-263K15 on chromosome 9 Contains the
             3' end of the NTRK2 gene for Neurotrophic tyrosine kinase,
             receptor, type 2 (TRKB), complete sequence
          Length = 171629

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 383   tttcattatttttctagttggt 404
             ||||||||||||||||||||||
Sbjct: 49835 tttcattatttttctagttggt 49856



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>gb|AC182700.2| Populus trichocarpa clone Pop1-73H20, complete sequence
          Length = 90044

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 121   gaaaaataatattacaataca 141
             |||||||||||||||||||||
Sbjct: 19341 gaaaaataatattacaataca 19321



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>emb|AL596327.5| Human DNA sequence from clone RP11-110F24 on chromosome 1, complete
             sequence
          Length = 94737

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 381   tttttcattatttttctagtt 401
             |||||||||||||||||||||
Sbjct: 33427 tttttcattatttttctagtt 33447



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>gb|AC025428.10| Homo sapiens chromosome 10 clone RP11-475D12, complete sequence
          Length = 174906

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 114   tatacaggaaaaataatatta 134
             |||||||||||||||||||||
Sbjct: 81071 tatacaggaaaaataatatta 81051



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>gb|AC167362.2| Mus musculus BAC clone RP23-74P17 from chromosome 7, complete sequence
          Length = 215537

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 119    aggaaaaataatattacaat 138
              ||||||||||||||||||||
Sbjct: 176658 aggaaaaataatattacaat 176639



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>emb|CR391993.14| Zebrafish DNA sequence from clone DKEY-3E17 in linkage group 22,
             complete sequence
          Length = 122651

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 96    agatcaataaatcaaccgtataca 119
             ||||||||||||||||| ||||||
Sbjct: 64421 agatcaataaatcaaccatataca 64398



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>gb|AC145868.2| Pan troglodytes BAC clone RP43-39F11 from 7, complete sequence
          Length = 209787

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    gcactgcaagatcaataaat 107
             ||||||||||||||||||||
Sbjct: 71760 gcactgcaagatcaataaat 71779



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>gb|BC061232.1| Mus musculus oxoglutarate dehydrogenase (lipoamide), mRNA (cDNA
           clone IMAGE:6535602), complete cds
          Length = 1980

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 403 gtcctgaagcgttccacaagtacc 426
           |||||||||| |||||||||||||
Sbjct: 76  gtcctgaagccttccacaagtacc 53



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>gb|AC122046.2| Mus musculus BAC clone RP24-449N4 from 7, complete sequence
          Length = 150101

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   aggaaaaataatattacaat 138
             ||||||||||||||||||||
Sbjct: 70766 aggaaaaataatattacaat 70785



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>ref|XM_651128.1| Entamoeba histolytica HM-1:IMSS ubiquitin carboxyl-terminal hydrolase
            (16.t00053) partial mRNA
          Length = 5580

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 376  gtagatttttcattattttt 395
            ||||||||||||||||||||
Sbjct: 1354 gtagatttttcattattttt 1335



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>gb|BC013670.1| Mus musculus oxoglutarate dehydrogenase (lipoamide), mRNA (cDNA
           clone MGC:19042 IMAGE:4188988), complete cds
          Length = 4035

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 403 gtcctgaagcgttccacaagtacc 426
           |||||||||| |||||||||||||
Sbjct: 54  gtcctgaagccttccacaagtacc 31



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>gb|AC074000.8| Homo sapiens BAC clone CTD-2023N18 from 7, complete sequence
          Length = 136723

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    gcactgcaagatcaataaat 107
             ||||||||||||||||||||
Sbjct: 53040 gcactgcaagatcaataaat 53021



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>gb|AF045646.3| Caenorhabditis elegans cosmid F56B3, complete sequence
          Length = 39874

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 378   agatttttcattatttttct 397
             ||||||||||||||||||||
Sbjct: 36239 agatttttcattatttttct 36258



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>emb|AL359762.24| Human DNA sequence from clone RP11-118B23 on chromosome 1 Contains
            the 3' end of the gene for RNA processing factor 1
            (RPF1), the GNG5 gene for guanine nucleotide binding
            protein (G protein), gamma 5, the SPATA1 gene for
            spermatogenesis associated 1, the CTBS gene for
            chitobiase, di-N-acetyl- and a CpG island, complete
            sequence
          Length = 125565

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 380  atttttcattatttttctag 399
            ||||||||||||||||||||
Sbjct: 6107 atttttcattatttttctag 6126



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>emb|AL121761.5|HSJ122P22 Human DNA sequence from clone RP1-122P22 on chromosome 20 Contains the 3'
              end the SLC24A3 gene for solute carrier family 24
              (sodium/potassium/calcium exchanger) member 3, a novel gene
              and a CpG island, complete sequence
          Length = 118990

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     acctaggaacacaaaataag 49
              ||||||||||||||||||||
Sbjct: 111589 acctaggaacacaaaataag 111570



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>emb|AL607152.21| Mouse DNA sequence from clone RP23-198N14 on chromosome 11, complete
              sequence
          Length = 232408

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 403    gtcctgaagcgttccacaagtacc 426
              |||||||||| |||||||||||||
Sbjct: 104189 gtcctgaagccttccacaagtacc 104166



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>gb|AC021956.8| Homo sapiens chromosome 11, clone RP11-447I3, complete sequence
          Length = 197864

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 383    tttcattatttttctagttg 402
              ||||||||||||||||||||
Sbjct: 178905 tttcattatttttctagttg 178924



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>gb|AC162615.2| Mus musculus chromosome 7, clone RP23-94C20, complete sequence
          Length = 130735

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 372   gaaggtagatttttcattattttt 395
             ||||||||||||| ||||||||||
Sbjct: 41590 gaaggtagattttgcattattttt 41567



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>dbj|AK220536.1| Mus musculus mRNA for mKIAA4192 protein
          Length = 4089

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 403 gtcctgaagcgttccacaagtacc 426
           |||||||||| |||||||||||||
Sbjct: 82  gtcctgaagccttccacaagtacc 59



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>gb|AC104442.2| Homo sapiens chromosome 3 clone RP11-905F6, complete sequence
          Length = 219227

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 364  tttcctctgaaggtagattt 383
            ||||||||||||||||||||
Sbjct: 4734 tttcctctgaaggtagattt 4715



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>gb|AC021006.7| Homo sapiens chromosome 11, clone RP11-124G5, complete sequence
          Length = 183772

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 383   tttcattatttttctagttg 402
             ||||||||||||||||||||
Sbjct: 87166 tttcattatttttctagttg 87185



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>ref|NM_010956.2| Mus musculus oxoglutarate dehydrogenase (lipoamide) (Ogdh), mRNA
          Length = 6638

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 403 gtcctgaagcgttccacaagtacc 426
           |||||||||| |||||||||||||
Sbjct: 121 gtcctgaagccttccacaagtacc 98



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>dbj|AK147289.1| Mus musculus cDNA, RIKEN full-length enriched library,
           clone:M5C1007N08 product:oxoglutarate dehydrogenase
           (lipoamide), full insert sequence
          Length = 6638

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 403 gtcctgaagcgttccacaagtacc 426
           |||||||||| |||||||||||||
Sbjct: 121 gtcctgaagccttccacaagtacc 98



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>dbj|AK150009.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:G530117I02 product:oxoglutarate
           dehydrogenase (lipoamide), full insert sequence
          Length = 4127

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 403 gtcctgaagcgttccacaagtacc 426
           |||||||||| |||||||||||||
Sbjct: 86  gtcctgaagccttccacaagtacc 63



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>gb|AC013603.17| Homo sapiens, clone RP11-10D7, complete sequence
          Length = 177839

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   ggaaaaataatattacaata 139
             ||||||||||||||||||||
Sbjct: 16833 ggaaaaataatattacaata 16852



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>dbj|AK169286.1| Mus musculus cDNA, RIKEN full-length enriched library,
           clone:I920176A16 product:oxoglutarate dehydrogenase
           (lipoamide), full insert sequence
          Length = 4155

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 403 gtcctgaagcgttccacaagtacc 426
           |||||||||| |||||||||||||
Sbjct: 112 gtcctgaagccttccacaagtacc 89



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>dbj|AK088582.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430020N12
           product:oxoglutarate dehydrogenase (lipoamide) (EC
           1.2.4.2) E1 component (fragment) homolog [Mus musculus],
           full insert sequence
          Length = 3554

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 403 gtcctgaagcgttccacaagtacc 426
           |||||||||| |||||||||||||
Sbjct: 48  gtcctgaagccttccacaagtacc 25



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>dbj|AK051166.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
            enriched library, clone:D130008K15
            product:unclassifiable, full insert sequence
          Length = 3423

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 29   cacctaggaacacaaaataa 48
            ||||||||||||||||||||
Sbjct: 2106 cacctaggaacacaaaataa 2087



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>dbj|AK008811.1| Mus musculus adult male stomach cDNA, RIKEN full-length enriched
           library, clone:2210403E04 product:unclassifiable, full
           insert sequence
          Length = 779

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 403 gtcctgaagcgttccacaagtacc 426
           |||||||||| |||||||||||||
Sbjct: 76  gtcctgaagccttccacaagtacc 53



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>gb|AC138058.2| Homo sapiens chromosome 3 clone RP11-298C2, complete sequence
          Length = 154123

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 364   tttcctctgaaggtagattt 383
             ||||||||||||||||||||
Sbjct: 79348 tttcctctgaaggtagattt 79329



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>gb|AC155998.2| Xenopus tropicalis clone ISB1-313L20, complete sequence
          Length = 86223

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 381   tttttcattatttttctagt 400
             ||||||||||||||||||||
Sbjct: 79753 tttttcattatttttctagt 79734



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>gb|AC122281.2| Mus musculus chromosome 16 clone RP23-239I17, complete sequence
          Length = 204608

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 29     cacctaggaacacaaaataa 48
              ||||||||||||||||||||
Sbjct: 119445 cacctaggaacacaaaataa 119464



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>dbj|AK201619.1| Mus musculus cDNA, clone:Y1G0138N03, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000064907, based on BLAT search
          Length = 172

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 403 gtcctgaagcgttccacaagtacc 426
           |||||||||| |||||||||||||
Sbjct: 70  gtcctgaagccttccacaagtacc 47



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>emb|BX936298.17| Zebrafish DNA sequence from clone DKEY-78L4 in linkage group 22,
             complete sequence
          Length = 234949

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 96    agatcaataaatcaaccgtataca 119
             ||||||||||||||||| ||||||
Sbjct: 65712 agatcaataaatcaaccatataca 65735



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>emb|CR456625.13| Zebrafish DNA sequence from clone DKEY-76G24 in linkage group 12,
              complete sequence
          Length = 228447

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 494    tataatgctgtcaattattc 513
              ||||||||||||||||||||
Sbjct: 121266 tataatgctgtcaattattc 121285



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>emb|AL163051.5|CNS01RIA Human chromosome 14 DNA sequence BAC R-872J21 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 188020

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 378   agatttttcattatttttctagtt 401
             ||||||| ||||||||||||||||
Sbjct: 96509 agattttacattatttttctagtt 96532



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>gb|AC004066.1|AC004066 Homo sapiens chromosome 4 clone B353C18 map 4q25, complete sequence
          Length = 139877

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 115    atacaggaaaaataatattacaat 138
              |||||| |||||||||||||||||
Sbjct: 135824 atacagtaaaaataatattacaat 135847



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>emb|Z11126.1|CEZK643 Caenorhabditis elegans Cosmid ZK643, complete sequence
          Length = 39534

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 381   tttttcattatttttctagt 400
             ||||||||||||||||||||
Sbjct: 15270 tttttcattatttttctagt 15289



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>emb|AL672074.19| Mouse DNA sequence from clone RP23-404I18 on chromosome X, complete
              sequence
          Length = 171593

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 383    tttcattatttttctagttg 402
              ||||||||||||||||||||
Sbjct: 127922 tttcattatttttctagttg 127903



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>emb|AL626772.10| Mouse DNA sequence from clone RP23-90D4 on chromosome 4, complete
             sequence
          Length = 230614

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   atacaggaaaaataatatta 134
             ||||||||||||||||||||
Sbjct: 77737 atacaggaaaaataatatta 77718



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>gb|AC091144.12| Homo sapiens chromosome 8, clone RP11-359B20, complete sequence
          Length = 185872

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 120  ggaaaaataatattacaata 139
            ||||||||||||||||||||
Sbjct: 6533 ggaaaaataatattacaata 6514


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,063,752
Number of Sequences: 3902068
Number of extensions: 5063752
Number of successful extensions: 330834
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 330600
Number of HSP's gapped (non-prelim): 227
length of query: 573
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 550
effective length of database: 17,143,297,704
effective search space: 9428813737200
effective search space used: 9428813737200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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