Clone Name | rbasd17i22 |
---|---|
Clone Library Name | barley_pub |
>gb|AF230786.1|AF230786 Hordeum vulgare human tumor protein-like protein mRNA, complete cds Length = 778 Score = 668 bits (337), Expect = 0.0 Identities = 362/372 (97%), Gaps = 10/372 (2%) Strand = Plus / Minus Query: 52 caaccacacaaatttcacgattaccattacaaagcaaatcccatgattatcacaaagttt 111 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 767 caaccacacaaatttcacgattaccattacaaagcaaatcccatgattatcacaaagttt 708 Query: 112 tcaagatactcaacatctgatagttactgacacaagcattggagagtcgactgacaacca 171 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 707 tcaagatactcaacatctgatagttactgacacaagcattggagagtcgactgacaacca 648 Query: 172 tagagcagagcaaaaatactgacgaccacatagatattagcatacagtgcgattagcact 231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 647 tagagcagagcaaaaatactgacgaccacatagatattagcatacagtgcgattagcact 588 Query: 232 tgacctctttcagcccatgagcgaaatagaggaaagttggatcagcagctccctccctgt 291 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 587 tgacctctttcagcccatgagcgaaatagaggaaagttggatcagcagctccctccctgt 528 Query: 292 agtaggc----------aaacaccacgctgccatcatcatgcatgctctcgcccacaaag 341 ||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 527 agtaggcaatcaagcttaaacaccacgctgccatcatcatgcatgctctcgcccacaaag 468 Query: 342 aactgaaggtccttgagcttgctaagaagatacttcgtggcagactcaacgttcttcttg 401 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 467 aactgaaggtccttgagcttgctaagaagatacttcgtggcagactcaacgttcttcttg 408 Query: 402 aaagcatctagc 413 |||||||||||| Sbjct: 407 aaagcatctagc 396
>gb|AF508970.1| Triticum aestivum translationally controlled tumor protein mRNA, complete cds Length = 779 Score = 575 bits (290), Expect = e-161 Identities = 366/390 (93%), Gaps = 1/390 (0%) Strand = Plus / Minus Query: 23 gagtaaacgctgaggcattgaccaaaacacaaccacacaaatttcacgattaccattaca 82 ||||||| || |||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct: 743 gagtaaaagccgaggcattgaccaaaacataaccacaccaatttcacgattaccattaca 684 Query: 83 aagcaaatcccatgattatcacaaagttttcaagatactcaacatctgatagttactgac 142 |||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| ||| Sbjct: 683 aagcaaatcccacaattatcagaaagttttcaagacactcaacatctgatagttaccgac 624 Query: 143 acaagcattggagagtcgactgacaaccatagagcagagcaaaaatactgacgaccacat 202 |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct: 623 acaa-cattggagagtcgactgacaaccatagagcaaagcaaaaatactgacgaccgcat 565 Query: 203 agatattagcatacagtgcgattagcacttgacctctttcagcccatgagcgaaatagag 262 |||| ||||||||||||||||||||||||||||||||||||||||||| || || || || Sbjct: 564 agattttagcatacagtgcgattagcacttgacctctttcagcccatgtgcaaagtacag 505 Query: 263 gaaagttggatcagcagctccctccctgtagtaggcaaacaccacgctgccatcatcatg 322 ||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||| Sbjct: 504 gaaagttggatcagcagctccctccttgtagtaggcgaacaccacgccgccatcatcatg 445 Query: 323 catgctctcgcccacaaagaactgaaggtccttgagcttgctaagaagatacttcgtggc 382 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 444 catgctctcgccaacaaagaactgaaggtccttgagcttgctaagaagatactttgtggc 385 Query: 383 agactcaacgttcttcttgaaagcatctag 412 ||||||||| |||||||||||| ||||||| Sbjct: 384 agactcaacattcttcttgaaaacatctag 355
>dbj|AK111285.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-180-H08, full insert sequence Length = 1057 Score = 163 bits (82), Expect = 6e-37 Identities = 154/178 (86%) Strand = Plus / Minus Query: 226 agcacttgacctctttcagcccatgagcgaaatagaggaaagttggatcagcagctccct 285 ||||||||||||| ||||||||||||| ||| || ||||| ||||| || | ||||| | Sbjct: 250 agcacttgacctccttcagcccatgagagaagtaaaggaaggttgggtcggtggctccgt 191 Query: 286 ccctgtagtaggcaaacaccacgctgccatcatcatgcatgctctcgcccacaaagaact 345 || |||||||||||||||||| || ||||||||||||||||||||| || |||||||||| Sbjct: 190 ccttgtagtaggcaaacaccaagccgccatcatcatgcatgctctcaccaacaaagaact 131 Query: 346 gaaggtccttgagcttgctaagaagatacttcgtggcagactcaacgttcttcttgaa 403 |||||||||||||||| | ||| | ||||| |||||| ||||| |||||||||||| Sbjct: 130 gaaggtccttgagctttccaagcaagtacttggtggcaccctcaatgttcttcttgaa 73 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 155 gagtcgactgacaaccatagagcagagcaaaaatac 190 ||||| ||||||||||||||| ||| ||||||||| Sbjct: 334 gagtcaactgacaaccatagactagaccaaaaatac 299
>dbj|AK105453.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-C05, full insert sequence Length = 970 Score = 163 bits (82), Expect = 6e-37 Identities = 154/178 (86%) Strand = Plus / Minus Query: 226 agcacttgacctctttcagcccatgagcgaaatagaggaaagttggatcagcagctccct 285 ||||||||||||| ||||||||||||| ||| || ||||| ||||| || | ||||| | Sbjct: 617 agcacttgacctccttcagcccatgagagaagtaaaggaaggttgggtcggtggctccgt 558 Query: 286 ccctgtagtaggcaaacaccacgctgccatcatcatgcatgctctcgcccacaaagaact 345 || |||||||||||||||||| || ||||||||||||||||||||| || |||||||||| Sbjct: 557 ccttgtagtaggcaaacaccaagccgccatcatcatgcatgctctcaccaacaaagaact 498 Query: 346 gaaggtccttgagcttgctaagaagatacttcgtggcagactcaacgttcttcttgaa 403 |||||||||||||||| | ||| | ||||| |||||| ||||| |||||||||||| Sbjct: 497 gaaggtccttgagctttccaagcaagtacttggtggcaccctcaatgttcttcttgaa 440 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 155 gagtcgactgacaaccatagagcagagcaaaaatac 190 ||||| ||||||||||||||| ||| ||||||||| Sbjct: 701 gagtcaactgacaaccatagactagaccaaaaatac 666
>dbj|D12626.1|RIC21KDP Oryza sativa (japonica cultivar-group) mRNA for 21kd polypeptide, complete cds Length = 786 Score = 163 bits (82), Expect = 6e-37 Identities = 154/178 (86%) Strand = Plus / Minus Query: 226 agcacttgacctctttcagcccatgagcgaaatagaggaaagttggatcagcagctccct 285 ||||||||||||| ||||||||||||| ||| || ||||| ||||| || | ||||| | Sbjct: 582 agcacttgacctccttcagcccatgagagaagtaaaggaaggttgggtcggtggctccgt 523 Query: 286 ccctgtagtaggcaaacaccacgctgccatcatcatgcatgctctcgcccacaaagaact 345 || |||||||||||||||||| || ||||||||||||||||||||| || |||||||||| Sbjct: 522 ccttgtagtaggcaaacaccaagccgccatcatcatgcatgctctcaccaacaaagaact 463 Query: 346 gaaggtccttgagcttgctaagaagatacttcgtggcagactcaacgttcttcttgaa 403 |||||||||||||||| | ||| | ||||| |||||| ||||| |||||||||||| Sbjct: 462 gaaggtccttgagctttccaagcaagtacttggtggcaccctcaatgttcttcttgaa 405 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 155 gagtcgactgacaaccatagagcagagcaaaaatac 190 ||||| ||||||||||||||| ||| ||||||||| Sbjct: 666 gagtcaactgacaaccatagactagaccaaaaatac 631
>gb|L47968.1|PEACPP23 Pisum sativum (clone PsRCI22-3) callus protein P23 mRNA, complete cds Length = 700 Score = 129 bits (65), Expect = 8e-27 Identities = 98/109 (89%) Strand = Plus / Minus Query: 255 aaatagaggaaagttggatcagcagctccctccctgtagtaggcaaacaccacgctgcca 314 |||||||| |||||||| |||||||| || ||| ||||||||||||| |||| ||| ||| Sbjct: 543 aaatagagaaaagttgggtcagcagcaccatccttgtagtaggcaaagaccaagctacca 484 Query: 315 tcatcatgcatgctctcgcccacaaagaactgaaggtccttgagcttgc 363 ||||||||||||||||| || ||||||||||| |||||||||||||||| Sbjct: 483 tcatcatgcatgctctcaccaacaaagaactgcaggtccttgagcttgc 435
>emb|X63872.1|MSTCTPMR M.sativa mRNA for translationally controlled tumor protein (partial) Length = 725 Score = 123 bits (62), Expect = 5e-25 Identities = 95/106 (89%) Strand = Plus / Minus Query: 258 tagaggaaagttggatcagcagctccctccctgtagtaggcaaacaccacgctgccatca 317 ||||| || |||||||||||||| || ||| ||||||||||||| |||| ||| |||||| Sbjct: 440 tagagaaatgttggatcagcagcaccatccttgtagtaggcaaagaccaagctaccatca 381 Query: 318 tcatgcatgctctcgcccacaaagaactgaaggtccttgagcttgc 363 |||||||||||||| || |||||||| ||||||||||||||||||| Sbjct: 380 tcatgcatgctctcaccaacaaagaattgaaggtccttgagcttgc 335
>emb|AJ487045.1|CAR487045 Cicer arietinum partial mRNA for translationally controlled tumor-like protein, clone CanTCTP Length = 331 Score = 119 bits (60), Expect = 7e-24 Identities = 87/96 (90%) Strand = Plus / Minus Query: 267 gttggatcagcagctccctccctgtagtaggcaaacaccacgctgccatcatcatgcatg 326 |||||||||||||| || ||| ||||||||||||| |||| || ||||||||||||||| Sbjct: 143 gttggatcagcagcgccatccttgtagtaggcaaagaccaagccaccatcatcatgcatg 84 Query: 327 ctctcgcccacaaagaactgaaggtccttgagcttg 362 |||||||| ||||||||||||| ||||||||||||| Sbjct: 83 ctctcgccaacaaagaactgaaagtccttgagcttg 48
>gb|AC141436.17| Medicago truncatula clone mth2-31k19, complete sequence Length = 112268 Score = 117 bits (59), Expect = 3e-23 Identities = 104/119 (87%) Strand = Plus / Plus Query: 258 tagaggaaagttggatcagcagctccctccctgtagtaggcaaacaccacgctgccatca 317 ||||| || ||||||| || ||| |||||| ||||||||||||| |||| ||| |||||| Sbjct: 102534 tagagaaatgttggattagtagcaccctccttgtagtaggcaaagaccaagctaccatca 102593 Query: 318 tcatgcatgctctcgcccacaaagaactgaaggtccttgagcttgctaagaagatactt 376 |||||||||||||| || |||||||| ||||||||||||||||||| ||| || ||||| Sbjct: 102594 tcatgcatgctctcaccaacaaagaattgaaggtccttgagcttgccaagcaggtactt 102652
>gb|AC139706.8| Medicago truncatula clone mth2-28n21, complete sequence Length = 106244 Score = 117 bits (59), Expect = 3e-23 Identities = 104/119 (87%) Strand = Plus / Minus Query: 258 tagaggaaagttggatcagcagctccctccctgtagtaggcaaacaccacgctgccatca 317 ||||| || ||||||| || ||| |||||| ||||||||||||| |||| ||| |||||| Sbjct: 3723 tagagaaatgttggattagtagcaccctccttgtagtaggcaaagaccaagctaccatca 3664 Query: 318 tcatgcatgctctcgcccacaaagaactgaaggtccttgagcttgctaagaagatactt 376 |||||||||||||| || |||||||| ||||||||||||||||||| ||| || ||||| Sbjct: 3663 tcatgcatgctctcaccaacaaagaattgaaggtccttgagcttgccaagcaggtactt 3605
>emb|X98618.1|MSTCTPHOM M.sativa mRNA for TCTP-like protein Length = 695 Score = 115 bits (58), Expect = 1e-22 Identities = 94/106 (88%) Strand = Plus / Minus Query: 258 tagaggaaagttggatcagcagctccctccctgtagtaggcaaacaccacgctgccatca 317 ||||| || |||||||||||||| || ||| |||||||||| || |||| ||| |||||| Sbjct: 516 tagagaaatgttggatcagcagcaccatccttgtagtaggcgaagaccaagctaccatca 457 Query: 318 tcatgcatgctctcgcccacaaagaactgaaggtccttgagcttgc 363 |||||||||||||| || |||||||| ||||||||||||||||||| Sbjct: 456 tcatgcatgctctcaccaacaaagaattgaaggtccttgagcttgc 411
>gb|AC108870.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0682E05, complete sequence Length = 162223 Score = 111 bits (56), Expect = 2e-21 Identities = 101/116 (87%) Strand = Plus / Plus Query: 226 agcacttgacctctttcagcccatgagcgaaatagaggaaagttggatcagcagctccct 285 ||||||||||||| ||||||||||||| ||| || ||||| ||||| || | ||||| | Sbjct: 133055 agcacttgacctccttcagcccatgagagaagtaaaggaaggttgggtcggtggctccgt 133114 Query: 286 ccctgtagtaggcaaacaccacgctgccatcatcatgcatgctctcgcccacaaag 341 || |||||||||||||||||| || ||||||||||||||||||||| || |||||| Sbjct: 133115 ccttgtagtaggcaaacaccaagccgccatcatcatgcatgctctcaccaacaaag 133170 Score = 52.0 bits (26), Expect = 0.001 Identities = 53/62 (85%) Strand = Plus / Plus Query: 342 aactgaaggtccttgagcttgctaagaagatacttcgtggcagactcaacgttcttcttg 401 |||||||||||||||||||| | ||| | ||||| |||||| ||||| |||||||||| Sbjct: 133361 aactgaaggtccttgagctttccaagcaagtacttggtggcaccctcaatgttcttcttg 133420 Query: 402 aa 403 || Sbjct: 133421 aa 133422 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 155 gagtcgactgacaaccatagagcagagcaaaaatac 190 ||||| ||||||||||||||| ||| ||||||||| Sbjct: 132971 gagtcaactgacaaccatagactagaccaaaaatac 133006
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 111 bits (56), Expect = 2e-21 Identities = 101/116 (87%) Strand = Plus / Plus Query: 226 agcacttgacctctttcagcccatgagcgaaatagaggaaagttggatcagcagctccct 285 ||||||||||||| ||||||||||||| ||| || ||||| ||||| || | ||||| | Sbjct: 25643008 agcacttgacctccttcagcccatgagagaagtaaaggaaggttgggtcggtggctccgt 25643067 Query: 286 ccctgtagtaggcaaacaccacgctgccatcatcatgcatgctctcgcccacaaag 341 || |||||||||||||||||| || ||||||||||||||||||||| || |||||| Sbjct: 25643068 ccttgtagtaggcaaacaccaagccgccatcatcatgcatgctctcaccaacaaag 25643123 Score = 97.6 bits (49), Expect = 3e-17 Identities = 91/105 (86%) Strand = Plus / Minus Query: 227 gcacttgacctctttcagcccatgagcgaaatagaggaaagttggatcagcagctccctc 286 |||||||||||| ||||||||||||| ||| || ||||| ||||| || | ||||| || Sbjct: 25672299 gcacttgacctccttcagcccatgagagaagtacaggaaggttgggtcggtggctccatc 25672240 Query: 287 cctgtagtaggcaaacaccacgctgccatcatcatgcatgctctc 331 | |||||||||| ||||||| |||||||||||| ||||||||||| Sbjct: 25672239 cttgtagtaggccaacaccaagctgccatcatcgtgcatgctctc 25672195 Score = 52.0 bits (26), Expect = 0.001 Identities = 53/62 (85%) Strand = Plus / Plus Query: 342 aactgaaggtccttgagcttgctaagaagatacttcgtggcagactcaacgttcttcttg 401 |||||||||||||||||||| | ||| | ||||| |||||| ||||| |||||||||| Sbjct: 25643314 aactgaaggtccttgagctttccaagcaagtacttggtggcaccctcaatgttcttcttg 25643373 Query: 402 aa 403 || Sbjct: 25643374 aa 25643375 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 155 gagtcgactgacaaccatagagcagagcaaaaatac 190 ||||| ||||||||||||||| ||| ||||||||| Sbjct: 25672385 gagtcaactgacaaccatagactagaccaaaaatac 25672350 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 155 gagtcgactgacaaccatagagcagagcaaaaatac 190 ||||| ||||||||||||||| ||| ||||||||| Sbjct: 25642924 gagtcaactgacaaccatagactagaccaaaaatac 25642959
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 111 bits (56), Expect = 2e-21 Identities = 101/116 (87%) Strand = Plus / Plus Query: 226 agcacttgacctctttcagcccatgagcgaaatagaggaaagttggatcagcagctccct 285 ||||||||||||| ||||||||||||| ||| || ||||| ||||| || | ||||| | Sbjct: 25961678 agcacttgacctccttcagcccatgagagaagtaaaggaaggttgggtcggtggctccgt 25961737 Query: 286 ccctgtagtaggcaaacaccacgctgccatcatcatgcatgctctcgcccacaaag 341 || |||||||||||||||||| || ||||||||||||||||||||| || |||||| Sbjct: 25961738 ccttgtagtaggcaaacaccaagccgccatcatcatgcatgctctcaccaacaaag 25961793 Score = 97.6 bits (49), Expect = 3e-17 Identities = 91/105 (86%) Strand = Plus / Minus Query: 227 gcacttgacctctttcagcccatgagcgaaatagaggaaagttggatcagcagctccctc 286 |||||||||||| ||||||||||||| ||| || ||||| ||||| || | ||||| || Sbjct: 25990969 gcacttgacctccttcagcccatgagagaagtacaggaaggttgggtcggtggctccatc 25990910 Query: 287 cctgtagtaggcaaacaccacgctgccatcatcatgcatgctctc 331 | |||||||||| ||||||| |||||||||||| ||||||||||| Sbjct: 25990909 cttgtagtaggccaacaccaagctgccatcatcgtgcatgctctc 25990865 Score = 52.0 bits (26), Expect = 0.001 Identities = 53/62 (85%) Strand = Plus / Plus Query: 342 aactgaaggtccttgagcttgctaagaagatacttcgtggcagactcaacgttcttcttg 401 |||||||||||||||||||| | ||| | ||||| |||||| ||||| |||||||||| Sbjct: 25961984 aactgaaggtccttgagctttccaagcaagtacttggtggcaccctcaatgttcttcttg 25962043 Query: 402 aa 403 || Sbjct: 25962044 aa 25962045 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 155 gagtcgactgacaaccatagagcagagcaaaaatac 190 ||||| ||||||||||||||| ||| ||||||||| Sbjct: 25991055 gagtcaactgacaaccatagactagaccaaaaatac 25991020 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 155 gagtcgactgacaaccatagagcagagcaaaaatac 190 ||||| ||||||||||||||| ||| ||||||||| Sbjct: 25961594 gagtcaactgacaaccatagactagaccaaaaatac 25961629
>gb|AC146592.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0010P23 PCR product, complete sequence Length = 19234 Score = 97.6 bits (49), Expect = 3e-17 Identities = 91/105 (86%) Strand = Plus / Minus Query: 227 gcacttgacctctttcagcccatgagcgaaatagaggaaagttggatcagcagctccctc 286 |||||||||||| ||||||||||||| ||| || ||||| ||||| || | ||||| || Sbjct: 2509 gcacttgacctccttcagcccatgagagaagtacaggaaggttgggtcggtggctccatc 2450 Query: 287 cctgtagtaggcaaacaccacgctgccatcatcatgcatgctctc 331 | |||||||||| ||||||| |||||||||||| ||||||||||| Sbjct: 2449 cttgtagtaggccaacaccaagctgccatcatcgtgcatgctctc 2405 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 155 gagtcgactgacaaccatagagcagagcaaaaatac 190 ||||| ||||||||||||||| ||| ||||||||| Sbjct: 2595 gagtcaactgacaaccatagactagaccaaaaatac 2560
>gb|DQ323740.1| Hevea brasiliensis translationally controlled tumor protein (TCTP) mRNA, complete cds Length = 670 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 285 tccctgtagtaggcaaacaccacgctgccatcatcatgcatgctctcgcccacaaagaac 344 ||||||||||| |||||||| | ||||||||||||||||||||||| |||||||| || Sbjct: 514 tccctgtagtaagcaaacacaagactgccatcatcatgcatgctctcccccacaaaaaat 455 Query: 345 tgaaggtccttgagctt 361 || ||||| ||||||| Sbjct: 454 tggaggtcactgagctt 438
>gb|AY642284.1| Lycopersicon esculentum translationally controlled tumor protein-like protein mRNA, complete cds Length = 910 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/76 (86%) Strand = Plus / Minus Query: 282 ccctccctgtagtaggcaaacaccacgctgccatcatcatgcatgctctcgcccacaaag 341 |||||| ||||||| |||||||||| | ||||||||||||||||||||| || |||||| Sbjct: 551 ccctccttgtagtacgcaaacaccagggcgccatcatcatgcatgctctcaccaacaaag 492 Query: 342 aactgaaggtccttga 357 || || | |||||||| Sbjct: 491 aattgcaagtccttga 476
>gb|BT012762.1| Lycopersicon esculentum clone 113708R, mRNA sequence Length = 863 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/76 (86%) Strand = Plus / Minus Query: 282 ccctccctgtagtaggcaaacaccacgctgccatcatcatgcatgctctcgcccacaaag 341 |||||| ||||||| |||||||||| | ||||||||||||||||||||| || |||||| Sbjct: 532 ccctccttgtagtacgcaaacaccagggcgccatcatcatgcatgctctcaccaacaaag 473 Query: 342 aactgaaggtccttga 357 || || | |||||||| Sbjct: 472 aattgcaagtccttga 457
>gb|AF091455.1|AF091455 Hevea brasiliensis translationally controlled tumor protein (TCTP) mRNA, complete cds Length = 837 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/76 (86%) Strand = Plus / Minus Query: 286 ccctgtagtaggcaaacaccacgctgccatcatcatgcatgctctcgcccacaaagaact 345 |||||||||| |||||||| | ||||||||||||||||||||||| |||||||| || | Sbjct: 513 ccctgtagtaagcaaacacaagactgccatcatcatgcatgctctcccccacaaaaaatt 454 Query: 346 gaaggtccttgagctt 361 | ||||| ||||||| Sbjct: 453 ggaggtcactgagctt 438
>dbj|AP006409.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT25E08, TM0299, complete sequence Length = 109465 Score = 69.9 bits (35), Expect = 6e-09 Identities = 95/115 (82%) Strand = Plus / Plus Query: 226 agcacttgacctctttcagcccatgagcgaaatagaggaaagttggatcagcagctccct 285 ||||||||| ||| |||| |||||| || || |||| ||| |||||||||| || || | Sbjct: 63739 agcacttgatctccttcaacccatgggcaaagtagatgaatgttggatcagtggcacctt 63798 Query: 286 ccctgtagtaggcaaacaccacgctgccatcatcatgcatgctctcgcccacaaa 340 || ||||||| ||||| |||| ||| |||||||| ||||||||||| || ||||| Sbjct: 63799 ccttgtagtatgcaaagaccaggcttccatcatcgtgcatgctctccccaacaaa 63853
>gb|DQ306731.1| Hevea brasiliensis isolate SSH2 mRNA sequence Length = 520 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 285 tccctgtagtaggcaaacaccacgctgccatcatcatgcatgctctcgcccac 337 |||||||| || |||||||| | ||||||||||||||||||||||| ||||| Sbjct: 27 tccctgtattaagcaaacacaatactgccatcatcatgcatgctctcccccac 79
>gb|AF421558.1| Glycine max translationally controlled tumor-like protein mRNA, complete cds Length = 884 Score = 56.0 bits (28), Expect = 9e-05 Identities = 67/80 (83%) Strand = Plus / Minus Query: 261 aggaaagttggatcagcagctccctccctgtagtaggcaaacaccacgctgccatcatca 320 ||||| |||||||||||||| || ||| ||||||||||||| |||| || |||||||| Sbjct: 529 aggaatgttggatcagcagcgccgtccttgtagtaggcaaagaccaagcaagcatcatca 470 Query: 321 tgcatgctctcgcccacaaa 340 ||||||||| || ||||| Sbjct: 469 cccatgctctcaccaacaaa 450
>gb|AF548024.1| Zea mays translationally controlled tumor protein-like protein (TCTP) mRNA, complete cds Length = 504 Score = 56.0 bits (28), Expect = 9e-05 Identities = 121/152 (79%) Strand = Plus / Minus Query: 225 tagcacttgacctctttcagcccatgagcgaaatagaggaaagttggatcagcagctccc 284 |||||||||| ||| || || ||||||| |||||||||||| || | || || || || Sbjct: 503 tagcacttgatctccttaagaccatgagagaaatagaggaatgtcgaattagtggcacca 444 Query: 285 tccctgtagtaggcaaacaccacgctgccatcatcatgcatgctctcgcccacaaagaac 344 ||| |||| ||||| || ||||| ||||||| | ||||||||| || ||||| || Sbjct: 443 tccttgtaataggcgaatgccacggacgcatcatccttcatgctctcaccaacaaaaaat 384 Query: 345 tgaaggtccttgagcttgctaagaagatactt 376 ||||||||||| ||||||||||| ||| |||| Sbjct: 383 tgaaggtccttcagcttgctaaggagaaactt 352
>gb|AY103653.1| Zea mays PCO087824 mRNA sequence Length = 846 Score = 56.0 bits (28), Expect = 9e-05 Identities = 121/152 (79%) Strand = Plus / Minus Query: 225 tagcacttgacctctttcagcccatgagcgaaatagaggaaagttggatcagcagctccc 284 |||||||||| ||| || || ||||||| |||||||||||| || |||| || || || Sbjct: 574 tagcacttgatctccttaagaccatgagagaaatagaggaatgtcggattagtggcacca 515 Query: 285 tccctgtagtaggcaaacaccacgctgccatcatcatgcatgctctcgcccacaaagaac 344 ||| |||| ||||| || |||||| | || || | ||||||||| || ||||| || Sbjct: 514 tccttgtaataggcgaataccacggaagcttcgtccttcatgctctcaccaacaaaaaat 455 Query: 345 tgaaggtccttgagcttgctaagaagatactt 376 ||||||||||| ||||||||||| ||| |||| Sbjct: 454 tgaaggtccttcagcttgctaaggagaaactt 423
>gb|AY488171.1| Capsicum annuum P23 tumor protein-like protein mRNA, complete cds Length = 615 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 289 tgtagtaggcaaacaccacgctgccatcatcatgcatgctctcgcccacaaagaactgaa 348 ||||||| |||||||||| | || || |||||||||||||| || | |||||| |||| Sbjct: 470 tgtagtacgcaaacaccagggcaccgtcgtcatgcatgctctcaccaagaaagaattgaa 411 Query: 349 ggtccttgagc 359 ||||||||||| Sbjct: 410 ggtccttgagc 400
>gb|AC136288.23| Medicago truncatula clone mth2-13o7, complete sequence Length = 110437 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 258 tagaggaaagttggatcagcagctccctccctgtagtaggcaaacaccacgctgccatca 317 ||||| ||||||||||||| || || || | ||||| |||||||| | ||| |||||| Sbjct: 43004 tagagaaaagttggatcagtggcaccatctttatagtaagcaaacacaaggcttccatca 43063 Query: 318 tcatgcatgctctcgcccacaaa 340 |||||||||||||| || ||||| Sbjct: 43064 tcatgcatgctctctccaacaaa 43086 Score = 48.1 bits (24), Expect = 0.023 Identities = 93/116 (80%) Strand = Plus / Plus Query: 225 tagcacttgacctctttcagcccatgagcgaaatagaggaaagttggatcagcagctccc 284 |||||||||| || |||| |||| ||| || ||||| ||||| ||||||| || || Sbjct: 28917 tagcacttgatttccttcaagccataagcaaagtagagaaaagtaggatcagtggcaccg 28976 Query: 285 tccctgtagtaggcaaacaccacgctgccatcatcatgcatgctctcgcccacaaa 340 ||| ||||||| ||||| || | || |||||||||||||||||||| || ||||| Sbjct: 28977 tccttgtagtaagcaaatacaagacttccatcatcatgcatgctctctccaacaaa 29032 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 312 ccatcatcatgcatgctctcgcccacaaa 340 |||||||||||||||||||| || ||||| Sbjct: 22476 ccatcatcatgcatgctctctccaacaaa 22504
>gb|AC134522.9| Medicago truncatula clone mth2-12g4, complete sequence Length = 129197 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 258 tagaggaaagttggatcagcagctccctccctgtagtaggcaaacaccacgctgccatca 317 ||||| ||||||||||||| || || || | ||||| |||||||| | ||| |||||| Sbjct: 53263 tagagaaaagttggatcagtggcaccatctttatagtaagcaaacacaaggcttccatca 53322 Query: 318 tcatgcatgctctcgcccacaaa 340 |||||||||||||| || ||||| Sbjct: 53323 tcatgcatgctctctccaacaaa 53345 Score = 48.1 bits (24), Expect = 0.023 Identities = 93/116 (80%) Strand = Plus / Plus Query: 225 tagcacttgacctctttcagcccatgagcgaaatagaggaaagttggatcagcagctccc 284 |||||||||| || |||| |||| ||| || ||||| ||||| ||||||| || || Sbjct: 39176 tagcacttgatttccttcaagccataagcaaagtagagaaaagtaggatcagtggcaccg 39235 Query: 285 tccctgtagtaggcaaacaccacgctgccatcatcatgcatgctctcgcccacaaa 340 ||| ||||||| ||||| || | || |||||||||||||||||||| || ||||| Sbjct: 39236 tccttgtagtaagcaaatacaagacttccatcatcatgcatgctctctccaacaaa 39291 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 312 ccatcatcatgcatgctctcgcccacaaa 340 |||||||||||||||||||| || ||||| Sbjct: 32735 ccatcatcatgcatgctctctccaacaaa 32763
>gb|DQ304537.1| Cucurbita maxima translationally controlled tumor protein mRNA, complete cds Length = 892 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 279 gctccctccctgtagtaggcaaacaccacgctgccatcatcatgcatgctctcgcccaca 338 ||||| ||||||||||| |||||||| | | | ||| |||||||||||||| ||||| Sbjct: 569 gctccttccctgtagtatgcaaacacgatacaggaatcgtcatgcatgctctctcccacg 510 Query: 339 aagaactgaaggtccttgagctt 361 |||||| | | |||||||||||| Sbjct: 509 aagaaccggaagtccttgagctt 487
>gb|AY496129.1| Capsicum annuum unknown mRNA Length = 540 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Minus Query: 289 tgtagtaggcaaacaccacgctgccatcatcatgcatgctctcgcccacaaagaactgaa 348 ||||||| |||||||||| | || || |||||||||||||| || | |||||| |||| Sbjct: 289 tgtagtatgcaaacaccagggcaccgtcgtcatgcatgctctcaccaagaaagaattgaa 230 Query: 349 ggtccttgagctt 361 | ||||||||||| Sbjct: 229 gatccttgagctt 217
>gb|AF418663.1|AF418663 Brassica oleracea translationally controlled tumor protein (TCTP) mRNA, complete cds Length = 823 Score = 50.1 bits (25), Expect = 0.006 Identities = 109/137 (79%) Strand = Plus / Minus Query: 226 agcacttgacctctttcagcccatgagcgaaatagaggaaagttggatcagcagctccct 285 ||||||||||||| |||| ||||| ||||| || | || ||||| | || ||| |||| Sbjct: 590 agcacttgacctccttcaaaccatgtgcgaagtacaaaaatgttgggttagtagcaccct 531 Query: 286 ccctgtagtaggcaaacaccacgctgccatcatcatgcatgctctcgcccacaaagaact 345 || ||||||| ||||| || | ||| ||||| ||||||| ||| || |||||||| | Sbjct: 530 ccttgtagtaagcaaagacaatagtgctgtcatcgtgcatgccctccccaacaaagaatt 471 Query: 346 gaaggtccttgagcttg 362 ||| ||||||||||||| Sbjct: 470 gaaagtccttgagcttg 454
>gb|DQ235166.1| Solanum tuberosum clone 153H07 P23 tumor protein-like mRNA, complete cds Length = 834 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 318 tcatgcatgctctcgcccacaaagaactgaaggtccttgagctt 361 |||||||||| ||| || |||||||| |||| |||||||||||| Sbjct: 484 tcatgcatgccctcaccaacaaagaattgaaagtccttgagctt 441
>gb|DQ207879.1| Solanum tuberosum clone 096G01 P23 tumor protein-like mRNA, complete cds Length = 794 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 318 tcatgcatgctctcgcccacaaagaactgaaggtccttgagctt 361 |||||||||| ||| || |||||||| |||| |||||||||||| Sbjct: 492 tcatgcatgccctcaccaacaaagaattgaaagtccttgagctt 449
>emb|Z37160.1|SHP23H S.tuberosum mRNA encoding homolog to human P23 tumor protein Length = 795 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 318 tcatgcatgctctcgcccacaaagaactgaaggtccttgagctt 361 |||||||||| ||| || |||||||| |||| |||||||||||| Sbjct: 474 tcatgcatgccctcaccaacaaagaattgaaagtccttgagctt 431
>gb|DQ241847.1| Solanum tuberosum clone 186H01 P23 tumor protein-like mRNA, complete cds Length = 795 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 318 tcatgcatgctctcgcccacaaagaactgaaggtccttgagctt 361 |||||||||| ||| || |||||||| |||| |||||||||||| Sbjct: 473 tcatgcatgccctcaccaacaaagaattgaaagtccttgagctt 430
>gb|DQ191671.1| Solanum tuberosum P23-like protein mRNA, complete cds Length = 819 Score = 46.1 bits (23), Expect = 0.090 Identities = 35/39 (89%) Strand = Plus / Minus Query: 323 catgctctcgcccacaaagaactgaaggtccttgagctt 361 ||||||||| || |||||||| |||| |||||||||||| Sbjct: 508 catgctctcaccaacaaagaattgaaagtccttgagctt 470
>gb|DQ191649.1| Solanum tuberosum P23 tumor protein-like protein mRNA, complete cds Length = 784 Score = 46.1 bits (23), Expect = 0.090 Identities = 35/39 (89%) Strand = Plus / Minus Query: 323 catgctctcgcccacaaagaactgaaggtccttgagctt 361 ||||||||| || |||||||| |||| |||||||||||| Sbjct: 476 catgctctcaccaacaaagaattgaaagtccttgagctt 438
>gb|DQ191623.1| Solanum tuberosum P23 tumor protein-like protein mRNA, complete cds Length = 787 Score = 46.1 bits (23), Expect = 0.090 Identities = 35/39 (89%) Strand = Plus / Minus Query: 323 catgctctcgcccacaaagaactgaaggtccttgagctt 361 ||||||||| || |||||||| |||| |||||||||||| Sbjct: 479 catgctctcaccaacaaagaattgaaagtccttgagctt 441
>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome Length = 2575032 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 353 cttgagcttgctaagaagatac 374 |||||||||||||||||||||| Sbjct: 2550953 cttgagcttgctaagaagatac 2550932
>gb|BT016182.1| Zea mays clone Contig15 mRNA sequence Length = 828 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 225 tagcacttgacctctttcagcccatgagcgaaatagaggaa 265 |||||||||| ||| || || ||||||| |||||||||||| Sbjct: 599 tagcacttgatctccttaagaccatgagagaaatagaggaa 559
>emb|Z86091.1|FXATCTP Fragaria x ananassa mRNA for TCTP protein Length = 815 Score = 42.1 bits (21), Expect = 1.4 Identities = 42/49 (85%) Strand = Plus / Minus Query: 314 atcatcatgcatgctctcgcccacaaagaactgaaggtccttgagcttg 362 ||||||| ||||||||| ||||||||||| || ||||| |||||||| Sbjct: 574 atcatcacccatgctctcccccacaaagaattggaggtcactgagcttg 526
>emb|AL672152.8| Mouse DNA sequence from clone RP23-426A16 on chromosome X, complete sequence Length = 200643 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 310 tgccatcatcatgcatgctct 330 ||||||||||||||||||||| Sbjct: 31249 tgccatcatcatgcatgctct 31229
>gb|AC161241.18| Medicago truncatula clone mth2-193c3, complete sequence Length = 125129 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 312 ccatcatcatgcatgctctcgcccacaaa 340 |||||||||||||||||||| || ||||| Sbjct: 3789 ccatcatcatgcatgctctctccaacaaa 3761
>gb|AC022062.10| Mus musculus chromosome 5, clone RP23-57P23, complete sequence Length = 235363 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ctcgcccacaaagaactgaa 348 |||||||||||||||||||| Sbjct: 218347 ctcgcccacaaagaactgaa 218366
>gb|AC006334.3| Homo sapiens BAC clone RP11-421B22 from 7, complete sequence Length = 141899 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 agagcagagcaaaaatactg 192 |||||||||||||||||||| Sbjct: 94198 agagcagagcaaaaatactg 94217
>gb|AC005101.2| Homo sapiens BAC clone CTA-352J5 from 7, complete sequence Length = 37991 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 catgattatcacaaagtttt 112 |||||||||||||||||||| Sbjct: 26125 catgattatcacaaagtttt 26144
>gb|AC132386.3| Mus musculus BAC clone RP23-438O22 from chromosome 5, complete sequence Length = 170182 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 ctcgcccacaaagaactgaa 348 |||||||||||||||||||| Sbjct: 97264 ctcgcccacaaagaactgaa 97245
>gb|AC115298.6| Mus musculus BAC clone RP23-224G24 from X, complete sequence Length = 184032 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 ttatcacaaagttttcaaga 117 |||||||||||||||||||| Sbjct: 171904 ttatcacaaagttttcaaga 171923
>gb|AC146048.3| Pan troglodytes BAC clone RP43-44J1 from 7, complete sequence Length = 135620 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 catgattatcacaaagtttt 112 |||||||||||||||||||| Sbjct: 17133 catgattatcacaaagtttt 17152
>gb|AC073330.6| Homo sapiens BAC clone RP11-409J21 from 7, complete sequence Length = 155704 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 agagcagagcaaaaatactg 192 |||||||||||||||||||| Sbjct: 31904 agagcagagcaaaaatactg 31923
>gb|AC108838.20| Mus musculus chromosome 18, clone RP23-326N14, complete sequence Length = 173862 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 attaccattacaaagcaaat 90 |||||||||||||||||||| Sbjct: 99557 attaccattacaaagcaaat 99538
>emb|AL442126.6| Human DNA sequence from clone RP11-409J23 on chromosome 13, complete sequence Length = 133789 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 tcccatgattatcacaaagttttc 113 |||| ||||||||||||||||||| Sbjct: 604 tcccctgattatcacaaagttttc 581
>emb|AL359842.14| Human DNA sequence from clone RP11-388D4 on chromosome 13 Contains a peroxisomal biogenesis factor 12 (PEX12) pseudogene, complete sequence Length = 136943 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 tcccatgattatcacaaagttttc 113 |||| ||||||||||||||||||| Sbjct: 135547 tcccctgattatcacaaagttttc 135524
>emb|AL121748.7|HSA342D11 Human DNA sequence from clone RP11-342D11 on chromosome 10 Contains the 3' end of the NRP1 gene for neuropilin 1 and two novel genes, complete sequence Length = 178183 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 atcagcagctccctccctgt 291 |||||||||||||||||||| Sbjct: 54870 atcagcagctccctccctgt 54851
>ref|XM_697229.1| PREDICTED: Danio rerio hypothetical protein LOC554704 (LOC554704), mRNA Length = 2240 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 gagcagagcaaaaatactga 193 |||||||||||||||||||| Sbjct: 779 gagcagagcaaaaatactga 798
>gb|BC058066.1| Danio rerio zgc:63779, mRNA (cDNA clone MGC:63779 IMAGE:2643345), complete cds Length = 2257 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 gagcagagcaaaaatactga 193 |||||||||||||||||||| Sbjct: 779 gagcagagcaaaaatactga 798
>ref|NM_200674.1| Danio rerio zgc:63779 (zgc:63779), mRNA Length = 2257 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 gagcagagcaaaaatactga 193 |||||||||||||||||||| Sbjct: 779 gagcagagcaaaaatactga 798
>emb|X91881.1|NTTROLCGN N.tabacum trolC gene Length = 804 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 gaaagttggatcagcagctc 282 |||||||||||||||||||| Sbjct: 572 gaaagttggatcagcagctc 591 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,469,898 Number of Sequences: 3902068 Number of extensions: 3469898 Number of successful extensions: 61313 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61156 Number of HSP's gapped (non-prelim): 152 length of query: 413 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 391 effective length of database: 17,147,199,772 effective search space: 6704555110852 effective search space used: 6704555110852 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)