ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17i20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY494984.1| Triticum aestivum LON1 protease mRNA, complete cds 726 0.0
2gb|DQ002905.1| Oryza sativa (indica cultivar-group) lon protease... 101 2e-18
3gb|AY129070.1| Oryza sativa (indica cultivar-group) Lon protease... 101 2e-18
4dbj|AK119169.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
5dbj|AK061670.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
6dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
7dbj|AP005092.3| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
8dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
9gb|AF385580.2| Dichanthelium lanuginosum Lon protease (lon) mRNA... 76 1e-10
10gb|AY109454.1| Zea mays CL1713_1 mRNA sequence 70 7e-09
11gb|U85494.1|ZMU85494 Zea mays LON1 protease (LON1) mRNA, complet... 70 7e-09
12gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 42 1.6
13gb|AC140791.4| Gallus gallus BAC clone TAM33-20G4 from chromosom... 42 1.6
14dbj|AP004913.1| Lotus japonicus genomic DNA, chromosome 5, clone... 42 1.6
15gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 40 6.4
16gb|AE000665.1|MMAE000665 Mus musculus TCR beta locus from bases ... 40 6.4
17gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 6.4
18gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 6.4
19gb|AC117678.16| Mus musculus chromosome 6, clone RP23-421M9, com... 40 6.4
20emb|CR962127.1| Medicago truncatula chromosome 5 clone mth2-181n... 40 6.4
21gb|AC133571.47| Medicago truncatula clone mth2-10h12, complete s... 40 6.4
22emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.4
23gb|AF336378.1| Mus musculus Kel blood group protein (Kel), epith... 40 6.4
24dbj|AK176945.1| Mus musculus cDNA, clone:Y0G0101B07, strand:minu... 40 6.4
25emb|CT573053.1| Medicago truncatula chromosome 5 clone mte1-8e5,... 40 6.4 
>gb|AY494984.1| Triticum aestivum LON1 protease mRNA, complete cds
          Length = 3143

 Score =  726 bits (366), Expect = 0.0
 Identities = 449/474 (94%), Gaps = 2/474 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    ctgaaataggttacatatacacccaaaccgacaacaacaggtggatctccttgctaccaa 60
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct: 3074 ctgaaataggttacatatacacccaaaccgacaacaacaggtggacctccttgctacca- 3016

                                                                        
Query: 61   taccaaaccgagcatagatagatgagcatccctctataaatacaagcacaaagaccggag 120
            || |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 3015 tagcaaaccgagcatagatagatgagcatccctctataaatacaatcacaaagaccagag 2956

                                                                        
Query: 121  cagatctccctgccgcttttgtggatagcaagtacccatatacacattccgcatattagc 180
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2955 cagatctccctgccgcttttgtggatagcaagtatccatatacacattccgcatattagc 2896

                                                                        
Query: 181  ttaactgaattggacgagcgatgctggcgtcatgagatttcactccgatggagcaattgc 240
            |||||||| |||||||||| | ||||||||||||||||||| |||| | |||||||||||
Sbjct: 2895 ttaactgagttggacgagcaacgctggcgtcatgagatttcgctccaacggagcaattgc 2836

                                                                        
Query: 241  tcgcctacgctcagtcgctcgtttgtagatatctgggcagtgaatagcgacgaatcttca 300
            |||||||||||||  ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 2835 tcgcctacgctcaa-cgctcatttgtagatatctgggcggtgaatagcgacgaatcttca 2777

                                                                        
Query: 301  aaacaggtacatggccaccgaggaaatactacatcaggcgccaattgggatttgtccgtg 360
            ||||  ||| ||||||||||||||||| | |||||||||||||||||| ||||| |||||
Sbjct: 2776 aaacgagtaaatggccaccgaggaaatgccacatcaggcgccaattggtatttgcccgtg 2717

                                                                        
Query: 361  ctatagactggagtgtagcctcaaagggaatccattctcaaaagcatggccaagtacttc 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2716 ctatagactggagtgtagcctcaaagggaatccattctcaaaagcatggccaagtacttc 2657

                                                                  
Query: 421  ctcgatgcgcttcacgagcagaatctcaatgccagcgaggatcggtgctggaat 474
            ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2656 ctcaatgcgcttcacgagcagaatctcaatgccagcgaggatcggagctggaat 2603
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>gb|DQ002905.1| Oryza sativa (indica cultivar-group) lon protease lon1a (lon1) mRNA,
            complete sequence, alternatively spliced
          Length = 2986

 Score =  101 bits (51), Expect = 2e-18
 Identities = 99/115 (86%)
 Strand = Plus / Minus

                                                                        
Query: 359  tgctatagactggagtgtagcctcaaagggaatccattctcaaaagcatggccaagtact 418
            ||||||||  |||||||| | |||| |||| |||||   |||||||||||| ||||||||
Sbjct: 2848 tgctatagcttggagtgtggtctcagagggcatccaccttcaaaagcatggtcaagtact 2789

                                                                   
Query: 419  tcctcgatgcgcttcacgagcagaatctcaatgccagcgaggatcggtgctggaa 473
            ||||||||||||||||| ||||||||||| | ||||| ||| || ||||||||||
Sbjct: 2788 tcctcgatgcgcttcacaagcagaatctccaagccagagagaatgggtgctggaa 2734
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>gb|AY129070.1| Oryza sativa (indica cultivar-group) Lon protease (Lon1) mRNA,
            complete cds
          Length = 2908

 Score =  101 bits (51), Expect = 2e-18
 Identities = 99/115 (86%)
 Strand = Plus / Minus

                                                                        
Query: 359  tgctatagactggagtgtagcctcaaagggaatccattctcaaaagcatggccaagtact 418
            ||||||||  |||||||| | |||| |||| |||||   |||||||||||| ||||||||
Sbjct: 2770 tgctatagcttggagtgtggtctcagagggcatccaccttcaaaagcatggtcaagtact 2711

                                                                   
Query: 419  tcctcgatgcgcttcacgagcagaatctcaatgccagcgaggatcggtgctggaa 473
            ||||||||||||||||| ||||||||||| | ||||| ||| || ||||||||||
Sbjct: 2710 tcctcgatgcgcttcacaagcagaatctccaagccagagagaatgggtgctggaa 2656
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>dbj|AK119169.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-G01, full
           insert sequence
          Length = 1299

 Score =  101 bits (51), Expect = 2e-18
 Identities = 99/115 (86%)
 Strand = Plus / Minus

                                                                       
Query: 359 tgctatagactggagtgtagcctcaaagggaatccattctcaaaagcatggccaagtact 418
           ||||||||  |||||||| | |||| |||| |||||   |||||||||||| ||||||||
Sbjct: 900 tgctatagcttggagtgtggtctcagagggcatccaccttcaaaagcatggtcaagtact 841

                                                                  
Query: 419 tcctcgatgcgcttcacgagcagaatctcaatgccagcgaggatcggtgctggaa 473
           ||||||||||||||||| ||||||||||| | ||||| ||| || ||||||||||
Sbjct: 840 tcctcgatgcgcttcacaagcagaatctccaagccagagagaatgggtgctggaa 786
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>dbj|AK061670.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-G02, full
           insert sequence
          Length = 1299

 Score =  101 bits (51), Expect = 2e-18
 Identities = 99/115 (86%)
 Strand = Plus / Minus

                                                                       
Query: 359 tgctatagactggagtgtagcctcaaagggaatccattctcaaaagcatggccaagtact 418
           ||||||||  |||||||| | |||| |||| |||||   |||||||||||| ||||||||
Sbjct: 900 tgctatagcttggagtgtggtctcagagggcatccaccttcaaaagcatggtcaagtact 841

                                                                  
Query: 419 tcctcgatgcgcttcacgagcagaatctcaatgccagcgaggatcggtgctggaa 473
           ||||||||||||||||| ||||||||||| | ||||| ||| || ||||||||||
Sbjct: 840 tcctcgatgcgcttcacaagcagaatctccaagccagagagaatgggtgctggaa 786
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 77/88 (87%)
 Strand = Plus / Plus

                                                                            
Query: 359      tgctatagactggagtgtagcctcaaagggaatccattctcaaaagcatggccaagtact 418
                ||||||||  |||||||| | |||| |||| |||||   |||||||||||| ||||||||
Sbjct: 20645010 tgctatagcttggagtgtggtctcagagggcatccaccttcaaaagcatggtcaagtact 20645069

                                            
Query: 419      tcctcgatgcgcttcacgagcagaatct 446
                ||||||||||||||||| ||||||||||
Sbjct: 20645070 tcctcgatgcgcttcacaagcagaatct 20645097
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>dbj|AP005092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1112_E07
          Length = 132055

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 77/88 (87%)
 Strand = Plus / Plus

                                                                         
Query: 359   tgctatagactggagtgtagcctcaaagggaatccattctcaaaagcatggccaagtact 418
             ||||||||  |||||||| | |||| |||| |||||   |||||||||||| ||||||||
Sbjct: 38621 tgctatagcttggagtgtggtctcagagggcatccaccttcaaaagcatggtcaagtact 38680

                                         
Query: 419   tcctcgatgcgcttcacgagcagaatct 446
             ||||||||||||||||| ||||||||||
Sbjct: 38681 tcctcgatgcgcttcacaagcagaatct 38708
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>dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0515E01
          Length = 140063

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 77/88 (87%)
 Strand = Plus / Plus

                                                                          
Query: 359    tgctatagactggagtgtagcctcaaagggaatccattctcaaaagcatggccaagtact 418
              ||||||||  |||||||| | |||| |||| |||||   |||||||||||| ||||||||
Sbjct: 110668 tgctatagcttggagtgtggtctcagagggcatccaccttcaaaagcatggtcaagtact 110727

                                          
Query: 419    tcctcgatgcgcttcacgagcagaatct 446
              ||||||||||||||||| ||||||||||
Sbjct: 110728 tcctcgatgcgcttcacaagcagaatct 110755
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>gb|AF385580.2| Dichanthelium lanuginosum Lon protease (lon) mRNA, complete cds
          Length = 3207

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                      
Query: 398  tcaaaagcatggccaagtacttcctcgatgcgcttcacgagcagaatctcaatgccag 455
            |||||||| ||| |||||||||||||||||||||| || ||||||||||| |||||||
Sbjct: 2640 tcaaaagcgtggtcaagtacttcctcgatgcgcttaacaagcagaatctccatgccag 2583
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>gb|AY109454.1| Zea mays CL1713_1 mRNA sequence
          Length = 3184

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                           
Query: 401  aaagcatggccaagtacttcctcgatgcgcttcacgagcagaatctc 447
            ||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct: 2741 aaagcatggtcgagtacttcctcgatgcgcttcacaagcagaatctc 2695
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>gb|U85494.1|ZMU85494 Zea mays LON1 protease (LON1) mRNA, complete cds
          Length = 3217

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                           
Query: 401  aaagcatggccaagtacttcctcgatgcgcttcacgagcagaatctc 447
            ||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct: 2741 aaagcatggtcgagtacttcctcgatgcgcttcacaagcagaatctc 2695
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 419    tcctcgatgcgcttcacgagc 439
              |||||||||||||||||||||
Sbjct: 694074 tcctcgatgcgcttcacgagc 694054
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>gb|AC140791.4| Gallus gallus BAC clone TAM33-20G4 from chromosome ul, complete
            sequence
          Length = 219854

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 74   atagatagatgagcatccctc 94
            |||||||||||||||||||||
Sbjct: 6522 atagatagatgagcatccctc 6502
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>dbj|AP004913.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT02A14, TM0072a,
            complete sequence
          Length = 100740

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 160  atacacattccgcatattagcttaa 184
            |||||||||||||||||||| ||||
Sbjct: 4022 atacacattccgcatattagattaa 4046
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>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
          Length = 384518

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 416   acttcctcgatgcgcttcac 435
             ||||||||||||||||||||
Sbjct: 53060 acttcctcgatgcgcttcac 53041
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>gb|AE000665.1|MMAE000665 Mus musculus TCR beta locus from bases 501860 to 700960 (section 3 of 3)
              of the complete sequence
          Length = 199101

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    gcttttgtggatagcaagta 154
              ||||||||||||||||||||
Sbjct: 194392 gcttttgtggatagcaagta 194373
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 417     cttcctcgatgcgcttcacg 436
               ||||||||||||||||||||
Sbjct: 1894051 cttcctcgatgcgcttcacg 1894070
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 417     cttcctcgatgcgcttcacg 436
               ||||||||||||||||||||
Sbjct: 1535845 cttcctcgatgcgcttcacg 1535826
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>gb|AC117678.16| Mus musculus chromosome 6, clone RP23-421M9, complete sequence
          Length = 204437

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   gcttttgtggatagcaagta 154
             ||||||||||||||||||||
Sbjct: 96556 gcttttgtggatagcaagta 96537
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>emb|CR962127.1| Medicago truncatula chromosome 5 clone mth2-181n9, COMPLETE SEQUENCE
          Length = 119528

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 91   cctctataaatacaagcaca 110
            ||||||||||||||||||||
Sbjct: 9634 cctctataaatacaagcaca 9615
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>gb|AC133571.47| Medicago truncatula clone mth2-10h12, complete sequence
          Length = 85905

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    cctctataaatacaagcaca 110
             ||||||||||||||||||||
Sbjct: 64740 cctctataaatacaagcaca 64759



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    cctctataaatacaagcaca 110
             ||||||||||||||||||||
Sbjct: 55200 cctctataaatacaagcaca 55219
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 417     cttcctcgatgcgcttcacg 436
               ||||||||||||||||||||
Sbjct: 1422933 cttcctcgatgcgcttcacg 1422914
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>gb|AF336378.1| Mus musculus Kel blood group protein (Kel), epithelial calcium channel 1
              (Ecac1), epithelial calcium channel 2 (Ecac2), and ephrin
              type A receptor (Mep) genes, complete cds; and T cell
              receptor beta chain (Tcr) gene, partial cds
          Length = 169781

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    gcttttgtggatagcaagta 154
              ||||||||||||||||||||
Sbjct: 142129 gcttttgtggatagcaagta 142148
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>dbj|AK176945.1| Mus musculus cDNA, clone:Y0G0101B07, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000031445, based on BLAT search
          Length = 213

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 419 tcctcgatgcgcttcacgag 438
           ||||||||||||||||||||
Sbjct: 72  tcctcgatgcgcttcacgag 53
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>emb|CT573053.1| Medicago truncatula chromosome 5 clone mte1-8e5, COMPLETE SEQUENCE
          Length = 106640

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     cctctataaatacaagcaca 110
              ||||||||||||||||||||
Sbjct: 105678 cctctataaatacaagcaca 105659



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    cctctataaatacaagcaca 110
             ||||||||||||||||||||
Sbjct: 96032 cctctataaatacaagcaca 96013


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,375,208
Number of Sequences: 3902068
Number of extensions: 3375208
Number of successful extensions: 50079
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49990
Number of HSP's gapped (non-prelim): 87
length of query: 474
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 452
effective length of database: 17,147,199,772
effective search space: 7750534296944
effective search space used: 7750534296944
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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