>gb|AC137593.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone
             OSJNBa0043I04, complete sequence
          Length = 145191

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 96/112 (85%)
 Strand = Plus / Minus

                                                                         
Query: 356   gcttcctggagtcgatgaaggcctggagcgccgccacctgctcgctggtcgggggctggt 415
             ||||| |||||| |||| || ||||||| ||  ||| ||||||  ||||||| ||||| |
Sbjct: 85659 gcttcttggagttgatgtagtcctggagggcttccatctgctccttggtcggcggctgct 85600

                                                                 
Query: 416   cgttgttcttgatggagcggtgcacgtcgtacgtcgtcgccccaaagaacac 467
             ||||||||||||| || |||||||||||||||||||||||||| | ||||||
Sbjct: 85599 cgttgttcttgatcgaccggtgcacgtcgtacgtcgtcgccccgaggaacac 85548



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                         
Query: 471   ccctgcggcgagcagcacgatctgccgcggggagacgtgtctgcccagcagcctcatcct 530
             |||||||||||||||| | | ||||| |||| |||||||  |||||| || |||||||||
Sbjct: 85459 ccctgcggcgagcagcgccacctgcctcgggaagacgtgcttgcccaacaccctcatcct 85400

                  
Query: 531   cctgc 535
             |||||
Sbjct: 85399 cctgc 85395

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 96/112 (85%)
 Strand = Plus / Minus

                                                                            
Query: 356      gcttcctggagtcgatgaaggcctggagcgccgccacctgctcgctggtcgggggctggt 415
                ||||| |||||| |||| || ||||||| ||  ||| ||||||  ||||||| ||||| |
Sbjct: 21739639 gcttcttggagttgatgtagtcctggagggcttccatctgctccttggtcggcggctgct 21739580

                                                                    
Query: 416      cgttgttcttgatggagcggtgcacgtcgtacgtcgtcgccccaaagaacac 467
                ||||||||||||| || |||||||||||||||||||||||||| | ||||||
Sbjct: 21739579 cgttgttcttgatcgaccggtgcacgtcgtacgtcgtcgccccgaggaacac 21739528



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                            
Query: 471      ccctgcggcgagcagcacgatctgccgcggggagacgtgtctgcccagcagcctcatcct 530
                |||||||||||||||| | | ||||| |||| |||||||  |||||| || |||||||||
Sbjct: 21739439 ccctgcggcgagcagcgccacctgcctcgggaagacgtgcttgcccaacaccctcatcct 21739380

                     
Query: 531      cctgc 535
                |||||
Sbjct: 21739379 cctgc 21739375

>emb|AM085146.1| Magnetospirillum gryphiswaldense magnetosome island
          Length = 130000

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 366   gtcgatgaaggcctggagcgc 386
             |||||||||||||||||||||
Sbjct: 11999 gtcgatgaaggcctggagcgc 11979

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 284      gcaccgcgccgccccgccgct 304
                |||||||||||||||||||||
Sbjct: 11192909 gcaccgcgccgccccgccgct 11192929

>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 462    gaacaccagccctgcggcgagcagc 486
              |||||||||||| ||||||||||||
Sbjct: 807845 gaacaccagcccggcggcgagcagc 807869

>gb|AC138292.20| Mus musculus chromosome 10, clone RP23-361K13, complete sequence
          Length = 166235

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 54    tcttcagcctgcctctgctag 74
             |||||||||||||||||||||
Sbjct: 53192 tcttcagcctgcctctgctag 53172

>emb|AL731637.2|OSJN00278 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0115I09,
             complete sequence
          Length = 141580

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 284   gcaccgcgccgccccgccgct 304
             |||||||||||||||||||||
Sbjct: 61533 gcaccgcgccgccccgccgct 61553

>ref|XM_478181.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 522

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 293 cgccccgccgctcgctgagg 312
           ||||||||||||||||||||
Sbjct: 422 cgccccgccgctcgctgagg 441

>gb|AC114640.11| Mus musculus chromosome 17, clone RP24-125I7, complete sequence
          Length = 190102

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 145    tctatatacatacatccata 164
              ||||||||||||||||||||
Sbjct: 134349 tctatatacatacatccata 134368

>gb|AC127588.3| Mus musculus BAC clone RP23-106G21 from chromosome 18, complete
             sequence
          Length = 180320

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   tctatatacatacatccata 164
             ||||||||||||||||||||
Sbjct: 89251 tctatatacatacatccata 89270

>gb|AC137511.3| Mus musculus BAC clone RP24-313I8 from chromosome 5, complete
            sequence
          Length = 168197

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 58   cagcctgcctctgctaggaa 77
            ||||||||||||||||||||
Sbjct: 9765 cagcctgcctctgctaggaa 9746

>gb|AC121856.3| Mus musculus BAC clone RP24-97G6 from chromosome 5, complete sequence
          Length = 195640

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    cagcctgcctctgctaggaa 77
             ||||||||||||||||||||
Sbjct: 17327 cagcctgcctctgctaggaa 17346

>emb|AL445489.10| Human DNA sequence from clone RP11-230L22 on chromosome 9 Contains the
             3' end of a gene for a novel delta-notch like protein
             (FLJ38464), the 5' end of the gene for a novel protein
             (KIAA1608), a novel gene and two CpG islands, complete
             sequence
          Length = 175869

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 55    cttcagcctgcctctgctaggaat 78
             ||||||||||||||| ||||||||
Sbjct: 76281 cttcagcctgcctctcctaggaat 76304

>ref|XM_504011.1| Yarrowia lipolytica CLIB122, YALI0E16214g predicted mRNA
          Length = 876

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 363 ggagtcgatgaaggcctgga 382
           ||||||||||||||||||||
Sbjct: 828 ggagtcgatgaaggcctgga 809

>emb|X08038.1|MTRPO Methanobacterium thermoautotrophicum rpoT, rpoU, rpoV and rpoX
           genes for RNA polymerase subunits A, B', B'' and C
          Length = 7538

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 264 agagatcatcacaagcatat 283
           ||||||||||||||||||||
Sbjct: 787 agagatcatcacaagcatat 806

>tpg|BK005012.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) WRKY
           transcription factor 9 (WRKY9) gene, complete cds
          Length = 8241

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 268 atcatcacaagcatatgcac 287
           ||||||||||||||||||||
Sbjct: 853 atcatcacaagcatatgcac 872

>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds
          Length = 5013

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 38   cattctactactagattcttcagc 61
            |||||||| |||||||||||||||
Sbjct: 1416 cattctaccactagattcttcagc 1393

>gb|AY144146.1|AY144146S1 Mus dunni MHC class I antigen (MuduTL) gene, MuduTL-1202 allele,
           exons 2 and 3 and partial cds
          Length = 853

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 261 gacagagatcatcacaagca 280
           ||||||||||||||||||||
Sbjct: 188 gacagagatcatcacaagca 207

>gb|AY144142.1|AY144142S1 Mus cookii MHC class I antigen (MucoTL) gene, MucoTL-1002 allele,
           exons 2 and 3 and partial cds
          Length = 917

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 261 gacagagatcatcacaagca 280
           ||||||||||||||||||||
Sbjct: 188 gacagagatcatcacaagca 207

>gb|AY144140.1|AY144140S1 Mus cookii MHC class I antigen (MucoTL) gene, MucoTL-1001 allele,
           exons 2 and 3 and partial cds
          Length = 925

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 261 gacagagatcatcacaagca 280
           ||||||||||||||||||||
Sbjct: 188 gacagagatcatcacaagca 207

>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 327     atcggtgccggcggccgccc 346
               ||||||||||||||||||||
Sbjct: 2011722 atcggtgccggcggccgccc 2011703

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 293      cgccccgccgctcgctgagg 312
                ||||||||||||||||||||
Sbjct: 18254638 cgccccgccgctcgctgagg 18254619

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 268      atcatcacaagcatatgcac 287
                ||||||||||||||||||||
Sbjct: 10469488 atcatcacaagcatatgcac 10469507

>dbj|AP002480.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0469E05
          Length = 160769

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 268    atcatcacaagcatatgcac 287
              ||||||||||||||||||||
Sbjct: 114448 atcatcacaagcatatgcac 114467

>gb|AC078920.17| Homo sapiens 12 BAC RP11-121G22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 156323

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 180    ttcctcctttggggaataat 199
              ||||||||||||||||||||
Sbjct: 140330 ttcctcctttggggaataat 140311

>ref|XM_236927.3| PREDICTED: Rattus norvegicus similar to p53-associated parkin-like
            cytoplasmic protein (LOC316228), mRNA
          Length = 7617

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 468  cagccctgcggcgagcagca 487
            ||||||||||||||||||||
Sbjct: 6288 cagccctgcggcgagcagca 6269

>dbj|AP004051.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1218_C12
          Length = 105861

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   cgccccgccgctcgctgagg 312
             ||||||||||||||||||||
Sbjct: 57881 cgccccgccgctcgctgagg 57862

>gb|AC154853.2| Mus musculus BAC clone RP23-21C15 from 17, complete sequence
          Length = 170353

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 145  tctatatacatacatccata 164
            ||||||||||||||||||||
Sbjct: 2656 tctatatacatacatccata 2675

>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 363     ggagtcgatgaaggcctgga 382
               ||||||||||||||||||||
Sbjct: 1925578 ggagtcgatgaaggcctgga 1925559


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,431,572
Number of Sequences: 3902068
Number of extensions: 4431572
Number of successful extensions: 96729
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96373
Number of HSP's gapped (non-prelim): 356
length of query: 562
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 539
effective length of database: 17,143,297,704
effective search space: 9240237462456
effective search space used: 9240237462456
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)