ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd17i06 |
|---|---|
| Clone Library Name | barley_pub |
>KPPR_WHEAT (P26302) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 404 Score = 200 bits (508), Expect = 3e-51 Identities = 97/97 (100%), Positives = 97/97 (100%) Frame = -3 Query: 547 GRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQ 368 GRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQ Sbjct: 298 GRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQ 357 Query: 367 QMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIIAER 257 QMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIIAER Sbjct: 358 QMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIIAER 394
>KPPR_MESCR (P27774) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 397 Score = 187 bits (475), Expect = 2e-47 Identities = 89/97 (91%), Positives = 93/97 (95%) Frame = -3 Query: 547 GRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQ 368 GRKLTCSYPGIKF YGPDTYFG EV+VLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQ Sbjct: 291 GRKLTCSYPGIKFFYGPDTYFGNEVTVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQ 350 Query: 367 QMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIIAER 257 QMLKH DFPGSNNGTGLFQTIVGLKIRDL+EQ+IA + Sbjct: 351 QMLKHQDFPGSNNGTGLFQTIVGLKIRDLFEQLIASK 387
>KPPR_ARATH (P25697) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 395 Score = 186 bits (471), Expect = 5e-47 Identities = 89/97 (91%), Positives = 93/97 (95%) Frame = -3 Query: 547 GRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQ 368 GRKLTCSYPGIKF+Y PD+YF EVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQ Sbjct: 290 GRKLTCSYPGIKFNYEPDSYFDHEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQ 349 Query: 367 QMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIIAER 257 QMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQ+IA + Sbjct: 350 QMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQLIANK 386
>KPPR_SPIOL (P09559) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 402 Score = 181 bits (458), Expect = 2e-45 Identities = 83/97 (85%), Positives = 92/97 (94%) Frame = -3 Query: 547 GRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQ 368 GRKLTCSYPGIKFSYGPDT++G EV+V+EMDG FDRLDELIYVESHLSNLSTKFYGEVTQ Sbjct: 296 GRKLTCSYPGIKFSYGPDTFYGNEVTVVEMDGMFDRLDELIYVESHLSNLSTKFYGEVTQ 355 Query: 367 QMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIIAER 257 QMLKH +FPGSNNGTG FQTI+GLKIRDL+EQ++A R Sbjct: 356 QMLKHQNFPGSNNGTGFFQTIIGLKIRDLFEQLVASR 392
>KPPR_CHLRE (P19824) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 375 Score = 167 bits (422), Expect = 2e-41 Identities = 76/94 (80%), Positives = 89/94 (94%) Frame = -3 Query: 547 GRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQ 368 GRKLTCS+PGIK YGPDT++GQEVSVLEMDGQFD+L+ELIYVESHLSN S KFYGE+TQ Sbjct: 275 GRKLTCSFPGIKMFYGPDTWYGQEVSVLEMDGQFDKLEELIYVESHLSNTSAKFYGEITQ 334 Query: 367 QMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQII 266 QMLK++ FPGSNNGTGLFQTIVGLK+R++YE+I+ Sbjct: 335 QMLKNSGFPGSNNGTGLFQTIVGLKVREVYERIV 368
>KPPR_SYNY3 (P37101) Phosphoribulokinase (EC 2.7.1.19) (Phosphopentokinase)| (PRKase) (PRK) Length = 332 Score = 143 bits (361), Expect = 3e-34 Identities = 61/96 (63%), Positives = 82/96 (85%) Frame = -3 Query: 547 GRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQ 368 GRKLTC+YPGIK YGPD + G EVS+LE+DG+F+ L+E++YVE+HLS TK+YGE+T+ Sbjct: 230 GRKLTCTYPGIKMYYGPDNFMGNEVSLLEVDGRFENLEEMVYVENHLSKTGTKYYGEMTE 289 Query: 367 QMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIIAE 260 +LKH D+PG++NGTGLFQ +VGLK+R +YEQ+ AE Sbjct: 290 LLLKHKDYPGTDNGTGLFQVLVGLKMRKVYEQLTAE 325
>ASSY_HALMA (Q5UZ46) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 420 Score = 33.9 bits (76), Expect = 0.31 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%) Frame = -3 Query: 517 IKFSYGPDTYFGQEVSVLEMDGQFDRLDEL---IYVESHLSNLSTKFYGEVTQQMLKHAD 347 +K YG D G V V + D +F+ +E + VE H+ + + +F + + +AD Sbjct: 25 LKEEYGYDEVIGVTVDVGQPDYEFEEAEETAEALGVEQHVVDATEEFADLCMEAVKANAD 84 Query: 346 FPGSNNGTGLFQTIVGLKIRDLYE 275 + G GT L + ++ I + E Sbjct: 85 YQGYPLGTALARPVIAKAILSVAE 108
>CARB_SULAC (Q4J8E8) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1052 Score = 32.3 bits (72), Expect = 0.90 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Frame = +3 Query: 54 HGEDFREVQNAGFHEFCSELSTVF*L*YIQTSHKKREDAHSH*VGDEMIHELEFGAHQTF 233 +G V+ AG H + +S F +T HK +E HS + E+ + F F Sbjct: 769 YGVVLEHVEEAGVHSGDATISIPFKKLSPETVHKMKESIHS--ISRELNIKGPFNVQ--F 824 Query: 234 AASAGTPALSAM-ICS*RSLIFSPTIVWKRPVPLLLPG 344 GTP + M + + RS+ FS +V K + L L G Sbjct: 825 VVKNGTPYIIEMNLRASRSMPFSSKVVGKNIIDLALTG 862
>KPPR_PINPS (P81664) Phosphoribulokinase (EC 2.7.1.19) (Phosphopentokinase)| (PRKase) (PRK) (Fragments) Length = 35 Score = 32.3 bits (72), Expect = 0.90 Identities = 18/29 (62%), Positives = 20/29 (68%) Frame = -3 Query: 526 YPGIKFSYGPDTYFGQEVSVLEMDGQFDR 440 Y +KF YG T +VSVLEMDGQFDR Sbjct: 8 YEQVKF-YGEVTQQMLKVSVLEMDGQFDR 35
>EXOS2_HUMAN (Q13868) Exosome complex exonuclease RRP4 (EC 3.1.13.-) (Ribosomal| RNA-processing protein 4) (Exosome component 2) Length = 293 Score = 30.8 bits (68), Expect = 2.6 Identities = 16/46 (34%), Positives = 27/46 (58%) Frame = -3 Query: 511 FSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEV 374 F G TY G+E + + G +R+++LI V++ L T++ GEV Sbjct: 39 FMRGHGTYMGEEKLIASVAGSVERVNKLICVKA----LKTRYIGEV 80
>EXOS2_MOUSE (Q8VBV3) Exosome complex exonuclease RRP4 (EC 3.1.13.-) (Ribosomal| RNA-processing protein 4) (Exosome component 2) Length = 293 Score = 30.4 bits (67), Expect = 3.4 Identities = 16/46 (34%), Positives = 27/46 (58%) Frame = -3 Query: 511 FSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEV 374 F G TY G+E + + G +R+++LI V++ L T++ GEV Sbjct: 39 FMRGHGTYMGEEKLIASVAGSVERVNKLICVKA----LKTRYNGEV 80
>PALFB_EUGGR (P84737) Photoactivated adenylate cyclase alpha-subunit-like| protein FB Length = 1019 Score = 30.4 bits (67), Expect = 3.4 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +2 Query: 245 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 352 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVLLATDICSFTPLSEKCSLTEVWTIC 640
>PCYAA_EUGGR (Q8S9F2) Photoactivated adenylate cyclase subunit alpha (EC| 4.6.1.1) (Photoactivated adenylyl cyclase alpha subunit) Length = 1019 Score = 30.0 bits (66), Expect = 4.5 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +2 Query: 245 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 352 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATDICSFTPLSEKCSLTEVWTIC 640
>PCYAA_ASTLO (Q76L34) Photoactivated adenylate cyclase subunit alpha (EC| 4.6.1.1) (Photoactivated adenylyl cyclase alpha subunit) Length = 1019 Score = 30.0 bits (66), Expect = 4.5 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +2 Query: 245 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 352 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATDICSFTPLSERCSLTEVWTIC 640
>PALST_EUGGR (P84739) Photoactivated adenylate cyclase alpha-subunit-like| protein ST- Length = 1019 Score = 30.0 bits (66), Expect = 4.5 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +2 Query: 245 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 352 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATDICSFTPLSEKCSLTEVWTIC 640
>PAL1F_EUGGR (P84738) Photoactivated adenylate cyclase alpha-subunit-like| protein 1224-5/1F Length = 1019 Score = 30.0 bits (66), Expect = 4.5 Identities = 11/36 (30%), Positives = 20/36 (55%) Frame = +2 Query: 245 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 352 RN P+S ++ + + + S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATAISSFTPLSEKCSLTEVWTIC 640
>MA2C1_HUMAN (Q9NTJ4) Alpha-mannosidase 2C1 (EC 3.2.1.24) (Alpha-D-mannoside| mannohydrolase) (Mannosidase alpha class 2C member 1) (Alpha mannosidase 6A8B) Length = 1040 Score = 29.3 bits (64), Expect = 7.7 Identities = 19/65 (29%), Positives = 26/65 (40%) Frame = +3 Query: 189 DEMIHELEFGAHQTFAASAGTPALSAMICS*RSLIFSPTIVWKRPVPLLLPGKSACFSIC 368 + M H + +H SA AL A L+ T+ WKR + LP S+ Sbjct: 591 EAMCHYEDIRSHGNTLLSAAAAALCAGEPGPEGLLIVNTLPWKRIEVMALPKPGGAHSLA 650 Query: 369 CVTSP 383 VT P Sbjct: 651 LVTVP 655
>CALC3_ONCKI (P01265) Calcitonin-3| Length = 32 Score = 28.9 bits (63), Expect = 10.0 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -3 Query: 406 SNLSTKFYGEVTQQMLKHADFPGSNNGTGL 317 SNLST G+++Q + K FP +N G G+ Sbjct: 2 SNLSTCMLGKLSQDLHKLQTFPRTNTGAGV 31 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,149,230 Number of Sequences: 219361 Number of extensions: 1487812 Number of successful extensions: 4077 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3960 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4076 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
